Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:01 (2277281): wrapper (7.7.26015): starting
12:06:01 (2277281): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 12:06:01] Arguments: --nthreads 3
[2025-12-18 12:06:01] Threads: 3
[2025-12-18 12:06:01] Checking for CVMFS
[2025-12-18 12:06:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 12:06:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 12:06:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 12:06:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 12:06:01] 2.9.2.0 415797 7008 83464 154147 2 57 20793041 36864001 0 130560 0 4834292 99.990 251275 17249 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 12:06:01] CVMFS is ok
[2025-12-18 12:06:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 12:06:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 12:06:01] Further information can be found at the LHC@home message board.
[2025-12-18 12:06:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 12:06:01] Checking for apptainer binary...
[2025-12-18 12:06:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 12:06:01] Running /usr/bin/apptainer --version
[2025-12-18 12:06:01] apptainer version 1.4.1-1.1
[2025-12-18 12:06:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 12:06:01] magicA246a
[2025-12-18 12:06:01] apptainer works
[2025-12-18 12:06:01] Set ATHENA_PROC_NUMBER=3
[2025-12-18 12:06:01] Set ATHENA_CORE_NUMBER=3
[2025-12-18 12:06:01] Starting ATLAS job with PandaID=6932419578
[2025-12-18 12:06:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 13:59:21]  *** The last 200 lines of the pilot log: ***
[2025-12-18 13:59:21] 2025-12-18 12:58:19,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 13:59:21] 2025-12-18 12:58:19,189 | INFO     | job 6932419578 has completed (purged errors)
[2025-12-18 13:59:21] 2025-12-18 12:58:19,189 | INFO     | overall cleanup function is called
[2025-12-18 13:59:21] 2025-12-18 12:58:20,196 | INFO     | --- collectZombieJob: --- 10, [2287448]
[2025-12-18 13:59:21] 2025-12-18 12:58:20,196 | INFO     | zombie collector waiting for pid 2287448
[2025-12-18 13:59:21] 2025-12-18 12:58:20,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 13:59:21] 2025-12-18 12:58:20,196 | INFO     | collected zombie processes
[2025-12-18 13:59:21] 2025-12-18 12:58:20,196 | INFO     | will attempt to kill all subprocesses of pid=2287448
[2025-12-18 13:59:21] 2025-12-18 12:58:20,242 | INFO     | process IDs to be killed: [2287448] (in reverse order)
[2025-12-18 13:59:21] 2025-12-18 12:58:20,267 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 13:59:21] 2025-12-18 12:58:20,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 13:59:21] 2025-12-18 12:58:20,268 | INFO     | did not find any defunct processes belonging to 2287448
[2025-12-18 13:59:21] 2025-12-18 12:58:20,270 | INFO     | did not find any defunct processes belonging to 2287448
[2025-12-18 13:59:21] 2025-12-18 12:58:20,270 | INFO     | ready for new job
[2025-12-18 13:59:21] 2025-12-18 12:58:20,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | ***************************************
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | ***************************************
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | 
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | architecture information:
[2025-12-18 13:59:21] 2025-12-18 12:58:20,271 | INFO     | executing command: cat /etc/os-release
[2025-12-18 13:59:21] 2025-12-18 12:58:20,280 | INFO     | cat /etc/os-release:
[2025-12-18 13:59:21] NAME="CentOS Linux"
[2025-12-18 13:59:21] VERSION="7 (Core)"
[2025-12-18 13:59:21] ID="centos"
[2025-12-18 13:59:21] ID_LIKE="rhel fedora"
[2025-12-18 13:59:21] VERSION_ID="7"
[2025-12-18 13:59:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 13:59:21] ANSI_COLOR="0;31"
[2025-12-18 13:59:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 13:59:21] HOME_URL="https://www.centos.org/"
[2025-12-18 13:59:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 13:59:21] 
[2025-12-18 13:59:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 13:59:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 13:59:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 13:59:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 13:59:21] 
[2025-12-18 13:59:21] 2025-12-18 12:58:20,280 | INFO     | ***************************************
[2025-12-18 13:59:21] 2025-12-18 12:58:20,783 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 13:59:21] 2025-12-18 12:58:20,795 | INFO     | sufficient remaining disk space (284025683968 B)
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | INFO     | update_server=False
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 13:59:21] 2025-12-18 12:58:20,796 | INFO     | aborting loop
[2025-12-18 13:59:21] 2025-12-18 12:58:21,456 | INFO     | all data control threads have been joined
[2025-12-18 13:59:21] 2025-12-18 12:58:21,765 | INFO     | all payload control threads have been joined
[2025-12-18 13:59:21] 2025-12-18 12:58:21,802 | INFO     | [job] job monitor thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:21,802 | INFO     | [job] retrieve thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:21,836 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:21,837 | INFO     | [payload] validate_post thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:21,850 | INFO     | all job control threads have been joined
[2025-12-18 13:59:21] 2025-12-18 12:58:22,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 13:59:21] 2025-12-18 12:58:22,462 | INFO     | [data] control thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,679 | INFO     | [payload] failed_post thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,682 | INFO     | [data] copytool_in thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,711 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,771 | INFO     | [payload] control thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,782 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,856 | INFO     | [job] control thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:22,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 13:59:21] 2025-12-18 12:58:23,183 | INFO     | [job] validate thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:23,295 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:23,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 13:59:21] 2025-12-18 12:58:24,049 | INFO     | [data] copytool_out thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:24,692 | INFO     | [job] queue monitor thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:26,875 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 13:59:21] 2025-12-18 12:58:50,972 | INFO     | PID=2280999 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 13:59:21] 2025-12-18 12:58:50,973 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 13:59:21] 2025-12-18 12:58:50,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 13:59:21] 2025-12-18 12:58:50,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 13:59:21] 2025-12-18 12:59:15,365 | INFO     | [monitor] cgroup control has ended
[2025-12-18 13:59:21] 2025-12-18 12:59:16,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704206886720)>', '<ExcThread(monitor, started 140703715809024)>']
[2025-12-18 13:59:21] 2025-12-18 12:59:17,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 13:59:21] 2025-12-18 12:59:17,105 | INFO     | [monitor] control thread has ended
[2025-12-18 13:59:21] 2025-12-18 12:59:21,647 | INFO     | all workflow threads have been joined
[2025-12-18 13:59:21] 2025-12-18 12:59:21,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 13:59:21] 2025-12-18 12:59:21,647 | INFO     | traces error code: 0
[2025-12-18 13:59:21] 2025-12-18 12:59:21,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 13:59:21] 2025-12-18 12:59:21,700 [wrapper] ==== pilot stdout END ====
[2025-12-18 13:59:21] 2025-12-18 12:59:21,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 13:59:21] 2025-12-18 12:59:21,704 [wrapper] pilotpid: 2280999
[2025-12-18 13:59:21] 2025-12-18 12:59:21,707 [wrapper] Pilot exit status: 0
[2025-12-18 13:59:21] 2025-12-18 12:59:21,714 [wrapper] pandaids: 6932419578
[2025-12-18 13:59:21] 2025-12-18 12:59:21,731 [wrapper] cleanup supervisor_pilot 2302785 2281000
[2025-12-18 13:59:21] 2025-12-18 12:59:21,734 [wrapper] Test setup, not cleaning
[2025-12-18 13:59:21] 2025-12-18 12:59:21,736 [wrapper] apfmon messages muted
[2025-12-18 13:59:21] 2025-12-18 12:59:21,739 [wrapper] ==== wrapper stdout END ====
[2025-12-18 13:59:21] 2025-12-18 12:59:21,741 [wrapper] ==== wrapper stderr END ====
[2025-12-18 13:59:21]  *** Error codes and diagnostics ***
[2025-12-18 13:59:21]     "exeErrorCode": 0,
[2025-12-18 13:59:21]     "exeErrorDiag": "",
[2025-12-18 13:59:21]     "pilotErrorCode": 0,
[2025-12-18 13:59:21]     "pilotErrorDiag": "",
[2025-12-18 13:59:21]  *** Listing of results directory ***
[2025-12-18 13:59:21] total 404624
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc    579449 Dec 17 15:12 pilot3.tar.gz
[2025-12-18 13:59:21] -rwx------ 1 boinc boinc     36322 Dec 17 15:12 runpilot2-wrapper.sh
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc      5112 Dec 17 15:12 queuedata.json
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc       100 Dec 18 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 13:59:21] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 12:06 run_atlas
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc       105 Dec 18 12:06 job.xml
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc 216604067 Dec 18 12:06 EVNT.47898833._000170.pool.root.1
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc    592395 Dec 18 12:06 input.tar.gz
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc     15847 Dec 18 12:06 start_atlas.sh
[2025-12-18 13:59:21] drwxrwx--x 2 boinc boinc      4096 Dec 18 12:06 shared
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc         0 Dec 18 12:06 boinc_setup_complete
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc      6447 Dec 18 12:06 init_data.xml
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc         0 Dec 18 12:06 boinc_lockfile
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc      2552 Dec 18 12:06 pandaJob.out
[2025-12-18 13:59:21] -rw------- 1 boinc boinc    988141 Dec 18 12:06 agis_schedconf.cvmfs.json
[2025-12-18 13:59:21] -rw------- 1 boinc boinc   1516240 Dec 18 12:06 agis_ddmendpoints.agis.ALL.json
[2025-12-18 13:59:21] drwx------ 5 boinc boinc      4096 Dec 18 12:06 pilot3
[2025-12-18 13:59:21] -rw------- 1 boinc boinc 191305205 Dec 18 13:57 HITS.47898836._004380.pool.root.1
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc       529 Dec 18 13:57 boinc_task_state.xml
[2025-12-18 13:59:21] -rw------- 1 boinc boinc      1016 Dec 18 13:58 memory_monitor_summary.json
[2025-12-18 13:59:21] -rw------- 1 boinc boinc    286993 Dec 18 13:58 log.47898836._004380.job.log.tgz.1
[2025-12-18 13:59:21] -rw------- 1 boinc boinc      7747 Dec 18 13:58 heartbeat.json
[2025-12-18 13:59:21] -rw------- 1 boinc boinc        95 Dec 18 13:58 pilot_heartbeat.json
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc        27 Dec 18 13:59 wrapper_checkpoint.txt
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc      8192 Dec 18 13:59 boinc_mmap_file
[2025-12-18 13:59:21] -rw------- 1 boinc boinc      4752 Dec 18 13:59 pilotlog.txt
[2025-12-18 13:59:21] -rw------- 1 boinc boinc    974671 Dec 18 13:59 log.47898836._004380.job.log.1
[2025-12-18 13:59:21] -rw------- 1 boinc boinc       357 Dec 18 13:59 output.list
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc       620 Dec 18 13:59 runtime_log
[2025-12-18 13:59:21] -rw------- 1 boinc boinc   1280000 Dec 18 13:59 result.tar.gz
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc      8917 Dec 18 13:59 runtime_log.err
[2025-12-18 13:59:21] -rw------- 1 boinc boinc       663 Dec 18 13:59 YrtMDmwR7p8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmg7bKDmK3Giwm.diag
[2025-12-18 13:59:21] -rw-r--r-- 1 boinc boinc     10912 Dec 18 13:59 stderr.txt
[2025-12-18 13:59:21] HITS file was successfully produced:
[2025-12-18 13:59:21] -rw------- 1 boinc boinc 191305205 Dec 18 13:57 shared/HITS.pool.root.1
[2025-12-18 13:59:21]  *** Contents of shared directory: ***
[2025-12-18 13:59:21] total 400208
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc 216604067 Dec 18 12:06 ATLAS.root_0
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc    592395 Dec 18 12:06 input.tar.gz
[2025-12-18 13:59:21] -rw-r--r-- 2 boinc boinc     15847 Dec 18 12:06 start_atlas.sh
[2025-12-18 13:59:21] -rw------- 1 boinc boinc 191305205 Dec 18 13:57 HITS.pool.root.1
[2025-12-18 13:59:21] -rw------- 1 boinc boinc   1280000 Dec 18 13:59 result.tar.gz
13:59:23 (2277281): run_atlas exited; CPU time 19511.731226
13:59:23 (2277281): called boinc_finish(0)

</stderr_txt>
]]>

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