Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:51:46 (2178469): wrapper (7.7.26015): starting
06:51:46 (2178469): wrapper: running run_atlas (--nthreads 2)
[2025-12-18 06:51:46] Arguments: --nthreads 2
[2025-12-18 06:51:46] Threads: 2
[2025-12-18 06:51:46] Checking for CVMFS
[2025-12-18 06:51:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 06:51:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 06:51:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 06:51:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 06:51:46] 2.9.2.0 769479 7019 61892 154136 0 56 36264446 36864000 0 130560 0 3723869 99.987 252926 9273 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 06:51:46] CVMFS is ok
[2025-12-18 06:51:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 06:51:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 06:51:46] Further information can be found at the LHC@home message board.
[2025-12-18 06:51:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 06:51:46] Checking for apptainer binary...
[2025-12-18 06:51:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 06:51:46] Running /usr/bin/apptainer --version
[2025-12-18 06:51:46] apptainer version 1.4.1-1.1
[2025-12-18 06:51:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 06:51:46] thA337
[2025-12-18 06:51:46] apptainer works
[2025-12-18 06:51:47] Set ATHENA_PROC_NUMBER=2
[2025-12-18 06:51:47] Set ATHENA_CORE_NUMBER=2
[2025-12-18 06:51:47] Starting ATLAS job with PandaID=6931730922
[2025-12-18 06:51:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 09:08:17]  *** The last 200 lines of the pilot log: ***
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | job 6931730922 has completed (purged errors)
[2025-12-18 09:08:17] 2025-12-18 08:07:12,891 | INFO     | overall cleanup function is called
[2025-12-18 09:08:17] 2025-12-18 08:07:13,792 | INFO     | PID=2182178 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 09:08:17] 2025-12-18 08:07:13,897 | INFO     | --- collectZombieJob: --- 10, [2188601]
[2025-12-18 09:08:17] 2025-12-18 08:07:13,897 | INFO     | zombie collector waiting for pid 2188601
[2025-12-18 09:08:17] 2025-12-18 08:07:13,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 09:08:17] 2025-12-18 08:07:13,898 | INFO     | collected zombie processes
[2025-12-18 09:08:17] 2025-12-18 08:07:13,898 | INFO     | will attempt to kill all subprocesses of pid=2188601
[2025-12-18 09:08:17] 2025-12-18 08:07:13,931 | INFO     | process IDs to be killed: [2188601] (in reverse order)
[2025-12-18 09:08:17] 2025-12-18 08:07:13,951 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 09:08:17] 2025-12-18 08:07:13,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 09:08:17] 2025-12-18 08:07:13,955 | INFO     | did not find any defunct processes belonging to 2188601
[2025-12-18 09:08:17] 2025-12-18 08:07:13,957 | INFO     | did not find any defunct processes belonging to 2188601
[2025-12-18 09:08:17] 2025-12-18 08:07:13,958 | INFO     | ready for new job
[2025-12-18 09:08:17] 2025-12-18 08:07:13,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 09:08:17] 2025-12-18 08:07:13,960 | INFO     | ***************************************
[2025-12-18 09:08:17] 2025-12-18 08:07:13,960 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 09:08:17] 2025-12-18 08:07:13,960 | INFO     | ***************************************
[2025-12-18 09:08:17] 2025-12-18 08:07:13,960 | INFO     | 
[2025-12-18 09:08:17] 2025-12-18 08:07:13,961 | INFO     | architecture information:
[2025-12-18 09:08:17] 2025-12-18 08:07:13,962 | INFO     | executing command: cat /etc/os-release
[2025-12-18 09:08:17] 2025-12-18 08:07:13,987 | INFO     | cat /etc/os-release:
[2025-12-18 09:08:17] NAME="CentOS Linux"
[2025-12-18 09:08:17] VERSION="7 (Core)"
[2025-12-18 09:08:17] ID="centos"
[2025-12-18 09:08:17] ID_LIKE="rhel fedora"
[2025-12-18 09:08:17] VERSION_ID="7"
[2025-12-18 09:08:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 09:08:17] ANSI_COLOR="0;31"
[2025-12-18 09:08:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 09:08:17] HOME_URL="https://www.centos.org/"
[2025-12-18 09:08:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 09:08:17] 
[2025-12-18 09:08:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 09:08:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 09:08:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 09:08:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 09:08:17] 
[2025-12-18 09:08:17] 2025-12-18 08:07:13,987 | INFO     | ***************************************
[2025-12-18 09:08:17] 2025-12-18 08:07:14,490 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | INFO     | sufficient remaining disk space (475258683392 B)
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | INFO     | update_server=False
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 09:08:17] 2025-12-18 08:07:14,501 | INFO     | aborting loop
[2025-12-18 09:08:17] 2025-12-18 08:07:14,502 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-18 09:08:17] 2025-12-18 08:07:14,502 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 09:08:17] 2025-12-18 08:07:14,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 09:08:17] 2025-12-18 08:07:14,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 09:08:17] 2025-12-18 08:07:14,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 09:08:17] 2025-12-18 08:07:14,549 | INFO     | all job control threads have been joined
[2025-12-18 09:08:17] 2025-12-18 08:07:14,990 | INFO     | all payload control threads have been joined
[2025-12-18 09:08:17] 2025-12-18 08:07:15,389 | INFO     | all data control threads have been joined
[2025-12-18 09:08:17] 2025-12-18 08:07:15,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 09:08:17] 2025-12-18 08:07:15,507 | INFO     | [job] retrieve thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,508 | INFO     | [job] job monitor thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,509 | INFO     | [job] queue monitor thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,555 | INFO     | [job] control thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,620 | INFO     | [payload] failed_post thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,940 | INFO     | [data] copytool_in thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:15,996 | INFO     | [payload] control thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,098 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,138 | INFO     | [payload] validate_post thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,320 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,395 | INFO     | [data] control thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,437 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:16,498 | INFO     | [job] validate thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:17,448 | INFO     | [data] copytool_out thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:17,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 09:08:17] 2025-12-18 08:07:21,803 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:07:25,131 | INFO     | job.realtimelogging is not enabled
[2025-12-18 09:08:17] 2025-12-18 08:07:26,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 09:08:17] 2025-12-18 08:08:11,514 | INFO     | [monitor] cgroup control has ended
[2025-12-18 09:08:17] 2025-12-18 08:08:12,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649784014656)>', '<ExcThread(monitor, started 139649292945152)>']
[2025-12-18 09:08:17] 2025-12-18 08:08:12,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 09:08:17] 2025-12-18 08:08:12,799 | INFO     | [monitor] control thread has ended
[2025-12-18 09:08:17] 2025-12-18 08:08:17,123 | INFO     | all workflow threads have been joined
[2025-12-18 09:08:17] 2025-12-18 08:08:17,124 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 09:08:17] 2025-12-18 08:08:17,124 | INFO     | traces error code: 0
[2025-12-18 09:08:17] 2025-12-18 08:08:17,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 09:08:17] 2025-12-18 08:08:17,166 [wrapper] ==== pilot stdout END ====
[2025-12-18 09:08:17] 2025-12-18 08:08:17,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 09:08:17] 2025-12-18 08:08:17,171 [wrapper] pilotpid: 2182178
[2025-12-18 09:08:17] 2025-12-18 08:08:17,173 [wrapper] Pilot exit status: 0
[2025-12-18 09:08:17] 2025-12-18 08:08:17,178 [wrapper] pandaids: 6931730922
[2025-12-18 09:08:17] 2025-12-18 08:08:17,190 [wrapper] cleanup supervisor_pilot 2205125 2182179
[2025-12-18 09:08:17] 2025-12-18 08:08:17,192 [wrapper] Test setup, not cleaning
[2025-12-18 09:08:17] 2025-12-18 08:08:17,194 [wrapper] apfmon messages muted
[2025-12-18 09:08:17] 2025-12-18 08:08:17,196 [wrapper] ==== wrapper stdout END ====
[2025-12-18 09:08:17] 2025-12-18 08:08:17,198 [wrapper] ==== wrapper stderr END ====
[2025-12-18 09:08:17]  *** Error codes and diagnostics ***
[2025-12-18 09:08:17]     "exeErrorCode": 0,
[2025-12-18 09:08:17]     "exeErrorDiag": "",
[2025-12-18 09:08:17]     "pilotErrorCode": 0,
[2025-12-18 09:08:17]     "pilotErrorDiag": "",
[2025-12-18 09:08:17]  *** Listing of results directory ***
[2025-12-18 09:08:17] total 341060
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc    579449 Dec 16 21:04 pilot3.tar.gz
[2025-12-18 09:08:17] -rwx------ 1 boinc boinc     36322 Dec 16 21:05 runpilot2-wrapper.sh
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc      5112 Dec 16 21:06 queuedata.json
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc       100 Dec 18 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 09:08:17] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 06:51 run_atlas
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc       105 Dec 18 06:51 job.xml
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc 191207985 Dec 18 06:51 EVNT.47886829._000289.pool.root.1
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc    592424 Dec 18 06:51 input.tar.gz
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc     15847 Dec 18 06:51 start_atlas.sh
[2025-12-18 09:08:17] drwxrwx--x 2 boinc boinc      4096 Dec 18 06:51 shared
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc         0 Dec 18 06:51 boinc_setup_complete
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc      6206 Dec 18 06:51 init_data.xml
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc         0 Dec 18 06:51 boinc_lockfile
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc      2537 Dec 18 06:51 pandaJob.out
[2025-12-18 09:08:17] -rw------- 1 boinc boinc    988102 Dec 18 06:51 agis_schedconf.cvmfs.json
[2025-12-18 09:08:17] -rw------- 1 boinc boinc   1516240 Dec 18 06:51 agis_ddmendpoints.agis.ALL.json
[2025-12-18 09:08:17] drwx------ 5 boinc boinc      4096 Dec 18 06:52 pilot3
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc       529 Dec 18 09:06 boinc_task_state.xml
[2025-12-18 09:08:17] -rw------- 1 boinc boinc        95 Dec 18 09:06 pilot_heartbeat.json
[2025-12-18 09:08:17] -rw------- 1 boinc boinc 151244127 Dec 18 09:06 HITS.47886831._015071.pool.root.1
[2025-12-18 09:08:17] -rw------- 1 boinc boinc      1011 Dec 18 09:06 memory_monitor_summary.json
[2025-12-18 09:08:17] -rw------- 1 boinc boinc    287729 Dec 18 09:06 log.47886831._015071.job.log.tgz.1
[2025-12-18 09:08:17] -rw------- 1 boinc boinc      7739 Dec 18 09:07 heartbeat.json
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc      8192 Dec 18 09:08 boinc_mmap_file
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc        27 Dec 18 09:08 wrapper_checkpoint.txt
[2025-12-18 09:08:17] -rw------- 1 boinc boinc      4628 Dec 18 09:08 pilotlog.txt
[2025-12-18 09:08:17] -rw------- 1 boinc boinc   1162537 Dec 18 09:08 log.47886831._015071.job.log.1
[2025-12-18 09:08:17] -rw------- 1 boinc boinc       357 Dec 18 09:08 output.list
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc       620 Dec 18 09:08 runtime_log
[2025-12-18 09:08:17] -rw------- 1 boinc boinc   1464320 Dec 18 09:08 result.tar.gz
[2025-12-18 09:08:17] -rw------- 1 boinc boinc       659 Dec 18 09:08 CqHNDmzTqp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv7VKDmkRAVtm.diag
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc      8897 Dec 18 09:08 runtime_log.err
[2025-12-18 09:08:17] -rw-r--r-- 1 boinc boinc     11656 Dec 18 09:08 stderr.txt
[2025-12-18 09:08:17] HITS file was successfully produced:
[2025-12-18 09:08:17] -rw------- 1 boinc boinc 151244127 Dec 18 09:06 shared/HITS.pool.root.1
[2025-12-18 09:08:17]  *** Contents of shared directory: ***
[2025-12-18 09:08:17] total 336460
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc 191207985 Dec 18 06:51 ATLAS.root_0
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc    592424 Dec 18 06:51 input.tar.gz
[2025-12-18 09:08:17] -rw-r--r-- 2 boinc boinc     15847 Dec 18 06:51 start_atlas.sh
[2025-12-18 09:08:17] -rw------- 1 boinc boinc 151244127 Dec 18 09:06 HITS.pool.root.1
[2025-12-18 09:08:17] -rw------- 1 boinc boinc   1464320 Dec 18 09:08 result.tar.gz
09:08:18 (2178469): run_atlas exited; CPU time 15842.342682
09:08:18 (2178469): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN