Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:06:48 (3231757): wrapper (7.7.26015): starting
06:06:48 (3231757): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 06:06:48] Arguments: --nthreads 4
[2025-12-18 06:06:48] Threads: 4
[2025-12-18 06:06:48] Checking for CVMFS
[2025-12-18 06:06:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 06:06:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 06:06:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 06:06:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 06:06:49] 2.13.1.0 9815 6320 88104 154134 1 57 9219668 10240001 911 130560 0 8067328 99.937 548954 414 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-18 06:06:49] CVMFS is ok
[2025-12-18 06:06:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 06:06:49] Checking for apptainer binary...
[2025-12-18 06:06:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 06:06:49] Running /usr/bin/apptainer --version
[2025-12-18 06:06:49] apptainer version 1.4.5
[2025-12-18 06:06:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 06:06:49] atlas6l1
[2025-12-18 06:06:49] apptainer works
[2025-12-18 06:06:49] Set ATHENA_PROC_NUMBER=4
[2025-12-18 06:06:49] Set ATHENA_CORE_NUMBER=4
[2025-12-18 06:06:49] Starting ATLAS job with PandaID=6932341783
[2025-12-18 06:06:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 07:38:32]  *** The last 200 lines of the pilot log: ***
[2025-12-18 07:38:32]  protocol_id=None
[2025-12-18 07:38:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-18 07:38:32]  replicas=None
[2025-12-18 07:38:32]  scope=mc23_13p6TeV
[2025-12-18 07:38:32]  status=None
[2025-12-18 07:38:32]  status_code=0
[2025-12-18 07:38:32]  storage_token=
[2025-12-18 07:38:32]  surl=/var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6932341783/log.47886933._009023.job.log.tgz.1
[2025-12-18 07:38:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/a2/log.47886933._009023.job.log.tgz.1
[2025-12-18 07:38:32]  workdir=None
[2025-12-18 07:38:32] ]
[2025-12-18 07:38:32] 2025-12-18 06:37:54,136 | INFO     | transferring file log.47886933._009023.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6932341783/log.47886933._009023.job.log.tgz.1 to /var/li
[2025-12-18 07:38:32] 2025-12-18 06:37:54,136 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6932341783/log.47886933._009023.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-18 07:38:32] 2025-12-18 06:37:54,148 | INFO     | adding to output.list: log.47886933._009023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/a2/log.47886933._009023.job.log.tg
[2025-12-18 07:38:32] 2025-12-18 06:37:54,149 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 07:38:32] 2025-12-18 06:37:54,149 | INFO     | summary of transferred files:
[2025-12-18 07:38:32] 2025-12-18 06:37:54,149 | INFO     |  -- lfn=log.47886933._009023.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 07:38:32] 2025-12-18 06:37:54,149 | INFO     | stage-out finished correctly
[2025-12-18 07:38:32] 2025-12-18 06:37:54,197 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 07:38:32] 2025-12-18 06:37:54,944 | INFO     | time since job start (5451s) is within the limit (174528.0s)
[2025-12-18 07:38:32] 2025-12-18 06:37:56,054 | INFO     | monitor loop #417: job 0:6932341783 is in state 'finished'
[2025-12-18 07:38:32] 2025-12-18 06:37:56,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 07:38:32] 2025-12-18 06:37:56,771 | INFO     | job 6932341783 has state=finished
[2025-12-18 07:38:32] 2025-12-18 06:37:56,771 | INFO     | preparing for final server update for job 6932341783 in state='finished'
[2025-12-18 07:38:32] 2025-12-18 06:37:56,771 | INFO     | this job has now completed (state=finished)
[2025-12-18 07:38:32] 2025-12-18 06:37:56,771 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 07:38:32] 2025-12-18 06:37:56,772 | INFO     | log transfer has been attempted: DONE
[2025-12-18 07:38:32] 2025-12-18 06:37:56,772 | INFO     | job 6932341783 has finished - writing final server update
[2025-12-18 07:38:32] 2025-12-18 06:37:56,772 | INFO     | total number of processed events: 400 (read)
[2025-12-18 07:38:32] 2025-12-18 06:37:56,773 | INFO     | executing command: lscpu
[2025-12-18 07:38:32] 2025-12-18 06:37:56,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 07:38:32] 2025-12-18 06:37:56,950 | INFO     | time since job start (5453s) is within the limit (174528.0s)
[2025-12-18 07:38:32] 2025-12-18 06:37:58,557 | INFO     | monitor loop #418: job 0:6932341783 is in state 'finished'
[2025-12-18 07:38:32] 2025-12-18 06:37:58,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 07:38:32] 2025-12-18 06:37:58,956 | INFO     | time since job start (5455s) is within the limit (174528.0s)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,067 | INFO     | PID=3235561 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 07:38:32] 2025-12-18 06:38:00,067 | INFO     | .. there are 2 such processes running
[2025-12-18 07:38:32] 2025-12-18 06:38:00,398 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-18 07:38:32] 2025-12-18 06:38:00,399 | INFO     | found 16 cores (1 core per socket, 16 sockets) , CPU MHz: 2400.0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,400 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6932341783/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,401 | INFO     | extracted standard info from prmon json
[2025-12-18 07:38:32] 2025-12-18 06:38:00,401 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 07:38:32] 2025-12-18 06:38:00,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 07:38:32] 2025-12-18 06:38:00,401 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 07:38:32] 2025-12-18 06:38:00,401 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 07:38:32] 2025-12-18 06:38:00,402 | INFO     | fitting pss+swap vs Time
[2025-12-18 07:38:32] 2025-12-18 06:38:00,402 | INFO     | sum of square deviations: 170944600.5
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | sum of deviations: 139697686.00000003
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | mean x: 1766037219.5
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | mean y: 2330690.975609756
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | intersect: -1440893091.6557937
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | chi2: 0.004092568599998288
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | current memory leak: 0.82 B/s (using 82 data points, chi2=0.00)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | ..............................
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . Timing measurements:
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . get job = 0 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . initial setup = 7 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . payload setup = 3 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . stage-in = 0 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,403 | INFO     | . payload execution = 5429 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,404 | INFO     | . stage-out = 0 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,404 | INFO     | . log creation = 0 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,404 | INFO     | ..............................
[2025-12-18 07:38:32] 2025-12-18 06:38:00,827 | INFO     | 
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | job summary report
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | --------------------------------------------------
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | PanDA job id: 6932341783
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | task id: 47886933
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | errors: (none)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | pilot state: finished 
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | transexitcode: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | exeerrorcode: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | exeerrordiag: 
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | exitcode: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | exitmsg: OK
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | cpuconsumptiontime: 20534 s
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | nevents: 400
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | neventsw: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | pid: 3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | pgrp: 3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | corecount: 4
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | event service: False
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | sizes: {0: 2283803, 1: 2284002, 3: 2284264, 11: 2284292, 5437: 2319968, 5444: 2320106}
[2025-12-18 07:38:32] 2025-12-18 06:38:00,828 | INFO     | --------------------------------------------------
[2025-12-18 07:38:32] 2025-12-18 06:38:00,829 | INFO     | 
[2025-12-18 07:38:32] 2025-12-18 06:38:00,829 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | job 6932341783 has completed (purged errors)
[2025-12-18 07:38:32] 2025-12-18 06:38:00,842 | INFO     | overall cleanup function is called
[2025-12-18 07:38:32] 2025-12-18 06:38:01,849 | INFO     | --- collectZombieJob: --- 10, [3242104]
[2025-12-18 07:38:32] 2025-12-18 06:38:01,849 | INFO     | zombie collector waiting for pid 3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:01,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 07:38:32] 2025-12-18 06:38:01,849 | INFO     | collected zombie processes
[2025-12-18 07:38:32] 2025-12-18 06:38:01,849 | INFO     | will attempt to kill all subprocesses of pid=3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:01,931 | INFO     | process IDs to be killed: [3242104] (in reverse order)
[2025-12-18 07:38:32] 2025-12-18 06:38:01,962 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 07:38:32] 2025-12-18 06:38:01,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 07:38:32] 2025-12-18 06:38:01,964 | INFO     | did not find any defunct processes belonging to 3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:01,966 | INFO     | did not find any defunct processes belonging to 3242104
[2025-12-18 07:38:32] 2025-12-18 06:38:01,966 | INFO     | ready for new job
[2025-12-18 07:38:32] 2025-12-18 06:38:01,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 07:38:32] 2025-12-18 06:38:01,967 | INFO     | ***************************************
[2025-12-18 07:38:32] 2025-12-18 06:38:01,967 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 07:38:32] 2025-12-18 06:38:01,967 | INFO     | ***************************************
[2025-12-18 07:38:32] 2025-12-18 06:38:01,967 | INFO     | 
[2025-12-18 07:38:32] 2025-12-18 06:38:01,967 | INFO     | pilot is running in a VM
[2025-12-18 07:38:32] 2025-12-18 06:38:01,968 | INFO     | architecture information:
[2025-12-18 07:38:32] 2025-12-18 06:38:01,968 | INFO     | executing command: cat /etc/os-release
[2025-12-18 07:38:32] 2025-12-18 06:38:01,978 | INFO     | cat /etc/os-release:
[2025-12-18 07:38:32] NAME="CentOS Linux"
[2025-12-18 07:38:32] VERSION="7 (Core)"
[2025-12-18 07:38:32] ID="centos"
[2025-12-18 07:38:32] ID_LIKE="rhel fedora"
[2025-12-18 07:38:32] VERSION_ID="7"
[2025-12-18 07:38:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 07:38:32] ANSI_COLOR="0;31"
[2025-12-18 07:38:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 07:38:32] HOME_URL="https://www.centos.org/"
[2025-12-18 07:38:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 07:38:32] 
[2025-12-18 07:38:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 07:38:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 07:38:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 07:38:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 07:38:32] 
[2025-12-18 07:38:32] 2025-12-18 06:38:01,978 | INFO     | ***************************************
[2025-12-18 07:38:32] 2025-12-18 06:38:02,482 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 07:38:32] 2025-12-18 06:38:02,491 | INFO     | sufficient remaining disk space (157348265984 B)
[2025-12-18 07:38:32] 2025-12-18 06:38:02,491 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 07:38:32] 2025-12-18 06:38:02,491 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 07:38:32] 2025-12-18 06:38:02,491 | INFO     | update_server=False
[2025-12-18 07:38:32] 2025-12-18 06:38:02,492 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 07:38:32] 2025-12-18 06:38:02,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 07:38:32] 2025-12-18 06:38:02,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 07:38:32] 2025-12-18 06:38:02,492 | INFO     | aborting loop
[2025-12-18 07:38:32] 2025-12-18 06:38:02,614 | INFO     | all data control threads have been joined
[2025-12-18 07:38:32] 2025-12-18 06:38:03,404 | INFO     | all payload control threads have been joined
[2025-12-18 07:38:32] 2025-12-18 06:38:03,437 | INFO     | all job control threads have been joined
[2025-12-18 07:38:32] 2025-12-18 06:38:03,497 | INFO     | [job] retrieve thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:03,498 | INFO     | [job] job monitor thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:03,557 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:03,619 | INFO     | [data] control thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:03,673 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,194 | INFO     | [payload] failed_post thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,344 | INFO     | [payload] validate_post thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,410 | INFO     | [payload] control thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,442 | INFO     | [job] control thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,498 | INFO     | [data] copytool_out thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,605 | INFO     | [job] validate thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,753 | INFO     | [data] copytool_in thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:04,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 07:38:32] 2025-12-18 06:38:04,941 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:05,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 07:38:32] 2025-12-18 06:38:06,467 | INFO     | [job] queue monitor thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:07,873 | INFO     | [monitor] cgroup control has ended
[2025-12-18 07:38:32] 2025-12-18 06:38:08,761 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 07:38:32] 2025-12-18 06:38:09,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135245093828416)>', '<ExcThread(monitor, started 135244585871104)>']
[2025-12-18 07:38:32] 2025-12-18 06:38:14,887 | INFO     | all workflow threads have been joined
[2025-12-18 07:38:32] 2025-12-18 06:38:14,888 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 07:38:32] 2025-12-18 06:38:14,888 | INFO     | traces error code: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:14,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | INFO     | PID=3235561 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | INFO     | .. there are 2 such processes running
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 07:38:32] 2025-12-18 06:38:32,267 | INFO     | [monitor] control thread has ended
[2025-12-18 07:38:32] 2025-12-18 06:38:32,337 [wrapper] ==== pilot stdout END ====
[2025-12-18 07:38:32] 2025-12-18 06:38:32,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 07:38:32] 2025-12-18 06:38:32,348 [wrapper] pilotpid: 3235561
[2025-12-18 07:38:32] 2025-12-18 06:38:32,354 [wrapper] Pilot exit status: 0
[2025-12-18 07:38:32] 2025-12-18 06:38:32,370 [wrapper] pandaids: 6932341783
[2025-12-18 07:38:32] 2025-12-18 06:38:32,404 [wrapper] cleanup supervisor_pilot 3267947 3235562
[2025-12-18 07:38:32] 2025-12-18 06:38:32,409 [wrapper] Test setup, not cleaning
[2025-12-18 07:38:32] 2025-12-18 06:38:32,415 [wrapper] apfmon messages muted
[2025-12-18 07:38:32] 2025-12-18 06:38:32,421 [wrapper] ==== wrapper stdout END ====
[2025-12-18 07:38:32] 2025-12-18 06:38:32,424 [wrapper] ==== wrapper stderr END ====
[2025-12-18 07:38:32]  *** Error codes and diagnostics ***
[2025-12-18 07:38:32]     "exeErrorCode": 0,
[2025-12-18 07:38:32]     "exeErrorDiag": "",
[2025-12-18 07:38:32]     "pilotErrorCode": 0,
[2025-12-18 07:38:32]     "pilotErrorDiag": "",
[2025-12-18 07:38:32]  *** Listing of results directory ***
[2025-12-18 07:38:32] insgesamt 328564
[2025-12-18 07:38:32] -rwx------ 1 yeti boinc     36322 Dez 17 12:17 runpilot2-wrapper.sh
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc      5112 Dez 17 12:17 queuedata.json
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc    579449 Dez 17 12:17 pilot3.tar.gz
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc       100 Dez 18 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 07:38:32] -rwxr-xr-x 1 yeti boinc      7986 Dez 18 06:06 run_atlas
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc       105 Dez 18 06:06 job.xml
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc 190153937 Dez 18 06:06 EVNT.47886929._000367.pool.root.1
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc     15847 Dez 18 06:06 start_atlas.sh
[2025-12-18 07:38:32] drwxrwx--x 2 yeti boinc      4096 Dez 18 06:06 shared
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc    592380 Dez 18 06:06 input.tar.gz
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc      6594 Dez 18 06:06 init_data.xml
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc         0 Dez 18 06:06 boinc_setup_complete
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc         0 Dez 18 06:06 boinc_lockfile
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc      2511 Dez 18 06:06 pandaJob.out
[2025-12-18 07:38:32] -rw------- 1 yeti boinc    988110 Dez 18 06:06 agis_schedconf.cvmfs.json
[2025-12-18 07:38:32] -rw------- 1 yeti boinc   1516240 Dez 18 06:07 agis_ddmendpoints.agis.ALL.json
[2025-12-18 07:38:32] drwx------ 5 yeti boinc      4096 Dez 18 06:07 pilot3
[2025-12-18 07:38:32] -rw------- 1 yeti boinc 140224958 Dez 18 07:37 HITS.47886933._009023.pool.root.1
[2025-12-18 07:38:32] -rw------- 1 yeti boinc        95 Dez 18 07:37 pilot_heartbeat.json
[2025-12-18 07:38:32] -rw------- 1 yeti boinc      1024 Dez 18 07:37 memory_monitor_summary.json
[2025-12-18 07:38:32] -rw------- 1 yeti boinc    261541 Dez 18 07:37 log.47886933._009023.job.log.tgz.1
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc       529 Dez 18 07:37 boinc_task_state.xml
[2025-12-18 07:38:32] -rw------- 1 yeti boinc      7758 Dez 18 07:38 heartbeat.json
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc      8192 Dez 18 07:38 boinc_mmap_file
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc        27 Dez 18 07:38 wrapper_checkpoint.txt
[2025-12-18 07:38:32] -rw------- 1 yeti boinc       822 Dez 18 07:38 pilotlog.txt
[2025-12-18 07:38:32] -rw------- 1 yeti boinc    819304 Dez 18 07:38 log.47886933._009023.job.log.1
[2025-12-18 07:38:32] -rw------- 1 yeti boinc       357 Dez 18 07:38 output.list
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc       620 Dez 18 07:38 runtime_log
[2025-12-18 07:38:32] -rw------- 1 yeti boinc   1095680 Dez 18 07:38 result.tar.gz
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc      9017 Dez 18 07:38 runtime_log.err
[2025-12-18 07:38:32] -rw------- 1 yeti boinc       638 Dez 18 07:38 CRlKDm8h4p8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIsbKDmK6wsFm.diag
[2025-12-18 07:38:32] -rw-r--r-- 1 yeti boinc     21596 Dez 18 07:38 stderr.txt
[2025-12-18 07:38:32] HITS file was successfully produced:
[2025-12-18 07:38:32] -rw------- 1 yeti boinc 140224958 Dez 18 07:37 shared/HITS.pool.root.1
[2025-12-18 07:38:32]  *** Contents of shared directory: ***
[2025-12-18 07:38:32] insgesamt 324316
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc 190153937 Dez 18 06:06 ATLAS.root_0
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc     15847 Dez 18 06:06 start_atlas.sh
[2025-12-18 07:38:32] -rw-r--r-- 2 yeti boinc    592380 Dez 18 06:06 input.tar.gz
[2025-12-18 07:38:32] -rw------- 1 yeti boinc 140224958 Dez 18 07:37 HITS.pool.root.1
[2025-12-18 07:38:32] -rw------- 1 yeti boinc   1095680 Dez 18 07:38 result.tar.gz
07:38:33 (3231757): run_atlas exited; CPU time 20600.733379
07:38:33 (3231757): called boinc_finish(0)

</stderr_txt>
]]>

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