Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:47:01 (4488): wrapper (7.7.26015): starting
01:47:01 (4488): wrapper: running run_atlas (--nthreads 12)
[2025-12-18 01:47:01] Arguments: --nthreads 12
[2025-12-18 01:47:01] Threads: 12
[2025-12-18 01:47:01] Checking for CVMFS
[2025-12-18 01:47:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 01:47:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 01:47:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 01:47:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 01:47:03] 2.13.3.0 28999 105 64012 154129 0 187 7167764 102400001 1720 130560 0 514382 99.996 5600 42 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-18 01:47:03] CVMFS is ok
[2025-12-18 01:47:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 01:47:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 01:47:03] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-18 01:47:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-18 01:47:03] Further information can be found at the LHC@home message board.
[2025-12-18 01:47:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 01:47:03] Checking for apptainer binary...
[2025-12-18 01:47:03] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-12-18 01:47:03] apptainer is not installed, using version from CVMFS
[2025-12-18 01:47:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 01:47:03] crocidura-russula
[2025-12-18 01:47:03] apptainer works
[2025-12-18 01:47:03] Set ATHENA_PROC_NUMBER=12
[2025-12-18 01:47:03] Set ATHENA_CORE_NUMBER=12
[2025-12-18 01:47:03] Starting ATLAS job with PandaID=6934354670
[2025-12-18 01:47:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 02:25:23]  *** The last 200 lines of the pilot log: ***
[2025-12-18 02:25:23]  status=None
[2025-12-18 02:25:23]  status_code=0
[2025-12-18 02:25:23]  storage_token=
[2025-12-18 02:25:23]  surl=/virtma/boinc/slots/12/PanDA_Pilot-6934354670/log.47898896._002604.job.log.tgz.1
[2025-12-18 02:25:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/70/log.47898896._002604.job.log.tgz.1
[2025-12-18 02:25:23]  workdir=None
[2025-12-18 02:25:23] ]
[2025-12-18 02:25:23] 2025-12-18 02:24:37,114 | INFO     | transferring file log.47898896._002604.job.log.tgz.1 from /virtma/boinc/slots/12/PanDA_Pilot-6934354670/log.47898896._002604.job.log.tgz.1 to /virtma/boinc/slots/1
[2025-12-18 02:25:23] 2025-12-18 02:24:37,114 | INFO     | executing command: /usr/bin/env mv /virtma/boinc/slots/12/PanDA_Pilot-6934354670/log.47898896._002604.job.log.tgz.1 /virtma/boinc/slots/12/log.47898896._002604.job
[2025-12-18 02:25:23] 2025-12-18 02:24:37,126 | INFO     | adding to output.list: log.47898896._002604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/70/log.47898896._002604.job.log.tg
[2025-12-18 02:25:23] 2025-12-18 02:24:37,126 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 02:25:23] 2025-12-18 02:24:37,126 | INFO     | summary of transferred files:
[2025-12-18 02:25:23] 2025-12-18 02:24:37,126 | INFO     |  -- lfn=log.47898896._002604.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 02:25:23] 2025-12-18 02:24:37,126 | INFO     | stage-out finished correctly
[2025-12-18 02:25:23] 2025-12-18 02:24:38,693 | INFO     | time since job start (2244s) is within the limit (174528.0s)
[2025-12-18 02:25:23] 2025-12-18 02:24:39,173 | INFO     | monitor loop #174: job 0:6934354670 is in state 'finished'
[2025-12-18 02:25:23] 2025-12-18 02:24:39,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 02:25:23] 2025-12-18 02:24:39,394 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 02:25:23] 2025-12-18 02:24:39,909 | INFO     | job 6934354670 has state=finished
[2025-12-18 02:25:23] 2025-12-18 02:24:39,910 | INFO     | preparing for final server update for job 6934354670 in state='finished'
[2025-12-18 02:25:23] 2025-12-18 02:24:40,698 | INFO     | time since job start (2246s) is within the limit (174528.0s)
[2025-12-18 02:25:23] 2025-12-18 02:24:41,676 | INFO     | monitor loop #175: job 0:6934354670 is in state 'finished'
[2025-12-18 02:25:23] 2025-12-18 02:24:41,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 02:25:23] 2025-12-18 02:24:41,811 | INFO     | PID=8406 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-18 02:25:23] 2025-12-18 02:24:41,812 | INFO     | .. there are 3 such processes running
[2025-12-18 02:25:23] 2025-12-18 02:24:42,812 | INFO     | time since job start (2248s) is within the limit (174528.0s)
[2025-12-18 02:25:23] 2025-12-18 02:24:43,875 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-18 02:25:23] 2025-12-18 02:24:43,875 | INFO     | this job has now completed (state=finished)
[2025-12-18 02:25:23] 2025-12-18 02:24:43,875 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 02:25:23] 2025-12-18 02:24:43,876 | INFO     | log transfer has been attempted: DONE
[2025-12-18 02:25:23] 2025-12-18 02:24:43,876 | INFO     | job 6934354670 has finished - writing final server update
[2025-12-18 02:25:23] 2025-12-18 02:24:43,876 | INFO     | total number of processed events: 400 (read)
[2025-12-18 02:25:23] 2025-12-18 02:24:43,877 | INFO     | executing command: lscpu
[2025-12-18 02:25:23] 2025-12-18 02:24:43,899 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 02:25:23] 2025-12-18 02:24:44,178 | INFO     | monitor loop #176: job 0:6934354670 is in state 'finished'
[2025-12-18 02:25:23] 2025-12-18 02:24:44,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 02:25:23] 2025-12-18 02:24:44,817 | INFO     | time since job start (2250s) is within the limit (174528.0s)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,122 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 02:25:23] 2025-12-18 02:24:46,128 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 2630.0726666666665
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | INFO     | using path: /virtma/boinc/slots/12/PanDA_Pilot-6934354670/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | INFO     | extracted standard info from prmon json
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 02:25:23] 2025-12-18 02:24:46,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | fitting pss+swap vs Time
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | sum of square deviations: 8362947.5
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | sum of deviations: 5726328640.0
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | mean x: 1766023642.5
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | mean y: 2516321.8666666667
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | intersect: -1209240010067.8865
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | chi2: 1.45994542877049
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | current memory leak: 684.73 B/s (using 30 data points, chi2=1.46)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | could have reported an average CPU frequency of 3459 MHz (5 samples)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | ..............................
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . Timing measurements:
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . get job = 0 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . initial setup = 5 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . payload setup = 3 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . stage-in = 0 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . payload execution = 2222 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . stage-out = 0 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | . log creation = 0 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,134 | INFO     | ..............................
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | 
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | job summary report
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | --------------------------------------------------
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | PanDA job id: 6934354670
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | task id: 47898896
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | errors: (none)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | pilot state: finished 
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | transexitcode: 0
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | exeerrorcode: 0
[2025-12-18 02:25:23] 2025-12-18 02:24:46,164 | INFO     | exeerrordiag: 
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | exitcode: 0
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | exitmsg: OK
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | cpuconsumptiontime: 18997 s
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | nevents: 400
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | neventsw: 0
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | pid: 15189
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | pgrp: 15189
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | corecount: 12
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | event service: False
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | sizes: {0: 2283948, 2: 2284210, 10: 2284238, 2229: 2318360, 2232: 2318360, 2238: 2318586}
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | --------------------------------------------------
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | 
[2025-12-18 02:25:23] 2025-12-18 02:24:46,165 | INFO     | executing command: ls -lF /virtma/boinc/slots/12
[2025-12-18 02:25:23] 2025-12-18 02:24:46,179 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | job 6934354670 has completed (purged errors)
[2025-12-18 02:25:23] 2025-12-18 02:24:46,180 | INFO     | overall cleanup function is called
[2025-12-18 02:25:23] 2025-12-18 02:24:47,187 | INFO     | --- collectZombieJob: --- 10, [15189]
[2025-12-18 02:25:23] 2025-12-18 02:24:47,187 | INFO     | zombie collector waiting for pid 15189
[2025-12-18 02:25:23] 2025-12-18 02:24:47,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 02:25:23] 2025-12-18 02:24:47,187 | INFO     | collected zombie processes
[2025-12-18 02:25:23] 2025-12-18 02:24:47,187 | INFO     | will attempt to kill all subprocesses of pid=15189
[2025-12-18 02:25:23] 2025-12-18 02:24:47,273 | INFO     | process IDs to be killed: [15189] (in reverse order)
[2025-12-18 02:25:23] 2025-12-18 02:24:47,318 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 02:25:23] 2025-12-18 02:24:47,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 02:25:23] 2025-12-18 02:24:47,320 | INFO     | did not find any defunct processes belonging to 15189
[2025-12-18 02:25:23] 2025-12-18 02:24:47,323 | INFO     | did not find any defunct processes belonging to 15189
[2025-12-18 02:25:23] 2025-12-18 02:24:47,323 | INFO     | ready for new job
[2025-12-18 02:25:23] 2025-12-18 02:24:47,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 02:25:23] 2025-12-18 02:24:47,324 | INFO     | ***************************************
[2025-12-18 02:25:23] 2025-12-18 02:24:47,324 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 02:25:23] 2025-12-18 02:24:47,324 | INFO     | ***************************************
[2025-12-18 02:25:23] 2025-12-18 02:24:47,324 | INFO     | 
[2025-12-18 02:25:23] 2025-12-18 02:24:47,326 | INFO     | architecture information:
[2025-12-18 02:25:23] 2025-12-18 02:24:47,327 | INFO     | executing command: cat /etc/os-release
[2025-12-18 02:25:23] 2025-12-18 02:24:47,337 | INFO     | cat /etc/os-release:
[2025-12-18 02:25:23] NAME="CentOS Linux"
[2025-12-18 02:25:23] VERSION="7 (Core)"
[2025-12-18 02:25:23] ID="centos"
[2025-12-18 02:25:23] ID_LIKE="rhel fedora"
[2025-12-18 02:25:23] VERSION_ID="7"
[2025-12-18 02:25:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 02:25:23] ANSI_COLOR="0;31"
[2025-12-18 02:25:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 02:25:23] HOME_URL="https://www.centos.org/"
[2025-12-18 02:25:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 02:25:23] 
[2025-12-18 02:25:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 02:25:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 02:25:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 02:25:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 02:25:23] 
[2025-12-18 02:25:23] 2025-12-18 02:24:47,337 | INFO     | ***************************************
[2025-12-18 02:25:23] 2025-12-18 02:24:47,840 | INFO     | executing command: df -mP /virtma/boinc/slots/12
[2025-12-18 02:25:23] 2025-12-18 02:24:47,848 | INFO     | sufficient remaining disk space (947220643840 B)
[2025-12-18 02:25:23] 2025-12-18 02:24:47,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 02:25:23] 2025-12-18 02:24:47,848 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 02:25:23] 2025-12-18 02:24:47,848 | INFO     | update_server=False
[2025-12-18 02:25:23] 2025-12-18 02:24:47,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 02:25:23] 2025-12-18 02:24:47,849 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 02:25:23] 2025-12-18 02:24:47,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 02:25:23] 2025-12-18 02:24:47,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 02:25:23] 2025-12-18 02:24:47,849 | INFO     | aborting loop
[2025-12-18 02:25:23] 2025-12-18 02:24:48,610 | INFO     | all data control threads have been joined
[2025-12-18 02:25:23] 2025-12-18 02:24:48,738 | INFO     | all payload control threads have been joined
[2025-12-18 02:25:23] 2025-12-18 02:24:48,854 | INFO     | [job] retrieve thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:48,854 | INFO     | [job] job monitor thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:48,855 | INFO     | [job] queue monitor thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,038 | INFO     | [payload] validate_post thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,192 | INFO     | all job control threads have been joined
[2025-12-18 02:25:23] 2025-12-18 02:24:49,258 | INFO     | [payload] failed_post thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,311 | INFO     | [data] copytool_in thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,615 | INFO     | [data] control thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,698 | INFO     | [job] validate thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,743 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,743 | INFO     | [payload] control thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,803 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,814 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,854 | INFO     | [data] copytool_out thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:49,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 02:25:23] 2025-12-18 02:24:50,198 | INFO     | [job] control thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:53,937 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:24:58,324 | INFO     | job.realtimelogging is not enabled
[2025-12-18 02:25:23] 2025-12-18 02:24:59,329 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 02:25:23] 2025-12-18 02:25:17,367 | INFO     | [monitor] cgroup control has ended
[2025-12-18 02:25:23] 2025-12-18 02:25:18,004 | INFO     | PID=8406 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-18 02:25:23] 2025-12-18 02:25:18,004 | INFO     | .. there are 3 such processes running
[2025-12-18 02:25:23] 2025-12-18 02:25:18,004 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 02:25:23] 2025-12-18 02:25:18,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 02:25:23] 2025-12-18 02:25:18,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 02:25:23] 2025-12-18 02:25:18,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172601268032)>', '<ExcThread(monitor, started 140172062603008)>']
[2025-12-18 02:25:23] 2025-12-18 02:25:19,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 02:25:23] 2025-12-18 02:25:19,009 | INFO     | [monitor] control thread has ended
[2025-12-18 02:25:23] 2025-12-18 02:25:23,397 | INFO     | all workflow threads have been joined
[2025-12-18 02:25:23] 2025-12-18 02:25:23,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 02:25:23] 2025-12-18 02:25:23,398 | INFO     | traces error code: 0
[2025-12-18 02:25:23] 2025-12-18 02:25:23,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 02:25:23] 2025-12-18 02:25:23,442 [wrapper] ==== pilot stdout END ====
[2025-12-18 02:25:23] 2025-12-18 02:25:23,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 02:25:23] 2025-12-18 02:25:23,447 [wrapper] pilotpid: 8406
[2025-12-18 02:25:23] 2025-12-18 02:25:23,449 [wrapper] Pilot exit status: 0
[2025-12-18 02:25:23] 2025-12-18 02:25:23,456 [wrapper] pandaids: 6934354670
[2025-12-18 02:25:23] 2025-12-18 02:25:23,478 [wrapper] cleanup supervisor_pilot 29425 8407
[2025-12-18 02:25:23] 2025-12-18 02:25:23,481 [wrapper] Test setup, not cleaning
[2025-12-18 02:25:23] 2025-12-18 02:25:23,483 [wrapper] apfmon messages muted
[2025-12-18 02:25:23] 2025-12-18 02:25:23,485 [wrapper] ==== wrapper stdout END ====
[2025-12-18 02:25:23] 2025-12-18 02:25:23,487 [wrapper] ==== wrapper stderr END ====
[2025-12-18 02:25:23]  *** Error codes and diagnostics ***
[2025-12-18 02:25:23]     "exeErrorCode": 0,
[2025-12-18 02:25:23]     "exeErrorDiag": "",
[2025-12-18 02:25:23]     "pilotErrorCode": 0,
[2025-12-18 02:25:23]     "pilotErrorDiag": "",
[2025-12-18 02:25:23]  *** Listing of results directory ***
[2025-12-18 02:25:23] total 380020
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc      5112 Dec 17 08:37 queuedata.json
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc    579449 Dec 17 08:37 pilot3.tar.gz
[2025-12-18 02:25:23] -rwx------ 1 boinc boinc     36322 Dec 17 08:37 runpilot2-wrapper.sh
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc       100 Dec 18 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 02:25:23] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 01:47 run_atlas
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc       105 Dec 18 01:47 job.xml
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc     15847 Dec 18 01:47 start_atlas.sh
[2025-12-18 02:25:23] drwxrwx--x 2 boinc boinc        68 Dec 18 01:47 shared
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc    592395 Dec 18 01:47 input.tar.gz
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc      8920 Dec 18 01:47 init_data.xml
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc 200360417 Dec 18 01:47 EVNT.47898894._000100.pool.root.1
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc         0 Dec 18 01:47 boinc_setup_complete
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc         0 Dec 18 01:47 boinc_lockfile
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc      2505 Dec 18 01:47 pandaJob.out
[2025-12-18 02:25:23] -rw------- 1 boinc boinc    988102 Dec 18 01:47 agis_schedconf.cvmfs.json
[2025-12-18 02:25:23] -rw------- 1 boinc boinc   1516240 Dec 18 01:47 agis_ddmendpoints.agis.ALL.json
[2025-12-18 02:25:23] drwx------ 5 boinc boinc      4096 Dec 18 01:47 pilot3
[2025-12-18 02:25:23] -rw------- 1 boinc boinc 183441743 Dec 18 02:24 HITS.47898896._002604.pool.root.1
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc       529 Dec 18 02:24 boinc_task_state.xml
[2025-12-18 02:25:23] -rw------- 1 boinc boinc        95 Dec 18 02:24 pilot_heartbeat.json
[2025-12-18 02:25:23] -rw------- 1 boinc boinc      1027 Dec 18 02:24 memory_monitor_summary.json
[2025-12-18 02:25:23] -rw------- 1 boinc boinc    356292 Dec 18 02:24 log.47898896._002604.job.log.tgz.1
[2025-12-18 02:25:23] -rw------- 1 boinc boinc      7800 Dec 18 02:24 heartbeat.json
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc      8192 Dec 18 02:25 boinc_mmap_file
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc        27 Dec 18 02:25 wrapper_checkpoint.txt
[2025-12-18 02:25:23] -rw------- 1 boinc boinc      4893 Dec 18 02:25 pilotlog.txt
[2025-12-18 02:25:23] -rw------- 1 boinc boinc    364384 Dec 18 02:25 log.47898896._002604.job.log.1
[2025-12-18 02:25:23] -rw------- 1 boinc boinc       357 Dec 18 02:25 output.list
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc       620 Dec 18 02:25 runtime_log
[2025-12-18 02:25:23] -rw------- 1 boinc boinc    737280 Dec 18 02:25 result.tar.gz
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc      8829 Dec 18 02:25 runtime_log.err
[2025-12-18 02:25:23] -rw------- 1 boinc boinc       654 Dec 18 02:25 f4uLDmrD2p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv9WKDmZpoEHn.diag
[2025-12-18 02:25:23] -rw-r--r-- 1 boinc boinc     22374 Dec 18 02:25 stderr.txt
[2025-12-18 02:25:23] HITS file was successfully produced:
[2025-12-18 02:25:23] -rw------- 1 boinc boinc 183441743 Dec 18 02:24 shared/HITS.pool.root.1
[2025-12-18 02:25:23]  *** Contents of shared directory: ***
[2025-12-18 02:25:23] total 376128
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc     15847 Dec 18 01:47 start_atlas.sh
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc    592395 Dec 18 01:47 input.tar.gz
[2025-12-18 02:25:23] -rw-r--r-- 2 boinc boinc 200360417 Dec 18 01:47 ATLAS.root_0
[2025-12-18 02:25:23] -rw------- 1 boinc boinc 183441743 Dec 18 02:24 HITS.pool.root.1
[2025-12-18 02:25:23] -rw------- 1 boinc boinc    737280 Dec 18 02:25 result.tar.gz
02:25:25 (4488): run_atlas exited; CPU time 19023.908024
02:25:25 (4488): called boinc_finish(0)

</stderr_txt>
]]>

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