Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-17 17:32:28 (13656): vboxwrapper version 26210
2025-12-17 17:32:28 (13656): BOINC client version: 8.2.8
2025-12-17 17:32:28 (13656): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-12-17 17:32:28 (13656): Successfully copied 'init_data.xml' to the shared directory.
2025-12-17 17:32:29 (13656): Create VM. (boinc_998a6548ee3f9843, slot#0)
2025-12-17 17:32:29 (13656): Setting Memory Size for VM. (4800MB)
2025-12-17 17:32:29 (13656): Setting CPU Count for VM. (8)
2025-12-17 17:32:30 (13656): Setting Chipset Options for VM.
2025-12-17 17:32:30 (13656): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-17 17:32:30 (13656): Setting Boot Options for VM.
2025-12-17 17:32:31 (13656): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-17 17:32:31 (13656): Enabling VM Network Access.
2025-12-17 17:32:31 (13656): Disabling USB Support for VM.
2025-12-17 17:32:32 (13656): Disabling COM Port Support for VM.
2025-12-17 17:32:32 (13656): Disabling LPT Port Support for VM.
2025-12-17 17:32:32 (13656): Disabling Audio Support for VM.
2025-12-17 17:32:32 (13656): Disabling Clipboard Support for VM.
2025-12-17 17:32:33 (13656): Disabling Drag and Drop Support for VM.
2025-12-17 17:32:33 (13656): Adding storage controller(s) to VM.
2025-12-17 17:32:33 (13656): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-17 17:32:35 (13656): Adding VirtualBox Guest Additions to VM.
2025-12-17 17:32:36 (13656): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-17 17:32:36 (13656): forwarding host port 61865 to guest port 80
2025-12-17 17:32:36 (13656): Enabling remote desktop for VM.
2025-12-17 17:32:36 (13656): Required extension pack not installed, remote desktop not enabled.
2025-12-17 17:32:36 (13656): Enabling shared directory for VM.
2025-12-17 17:32:37 (13656): Starting VM using VBoxManage interface. (boinc_998a6548ee3f9843, slot#0)
2025-12-17 17:32:48 (13656): Successfully started VM. (PID = '23080')
2025-12-17 17:32:48 (13656): Reporting VM Process ID to BOINC.
2025-12-17 17:32:48 (13656): Guest Log: BIOS: VirtualBox 7.0.6
2025-12-17 17:32:48 (13656): Guest Log: CPUID EDX: 0x178bfbff
2025-12-17 17:32:48 (13656): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-17 17:32:48 (13656): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-17 17:32:48 (13656): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-17 17:32:48 (13656): Detected: Web Application Enabled (http://localhost:61865)
2025-12-17 17:32:48 (13656): Preference change detected
2025-12-17 17:32:48 (13656): Setting CPU throttle for VM. (100%)
2025-12-17 17:32:48 (13656): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-17 17:32:50 (13656): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-17 17:32:50 (13656): Guest Log: BIOS: Booting from Hard Disk...
2025-12-17 17:32:53 (13656): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-17 17:32:53 (13656): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-17 17:32:53 (13656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-17 17:33:00 (13656): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-17 17:33:00 (13656): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-17 17:33:11 (13656): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000395 main     Log opened 2025-12-17T17:33:09.110733000Z
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000590 main     OS Product: Linux
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000647 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000694 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000742 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000743 main     Process ID: 1389
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.000744 main     Package type: LINUX_64BITS_GENERIC
2025-12-17 17:33:11 (13656): Guest Log: 00:00:00.004121 main     5.2.32 r132073 started. Verbose level = 0
2025-12-17 17:33:11 (13656): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-17 17:33:11 (13656): Guest Log: [INFO] Mounting shared directory
2025-12-17 17:33:11 (13656): Guest Log: [INFO] Checking for init_data.xml
2025-12-17 17:33:15 (13656): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-17 17:33:15 (13656): Guest Log: [INFO] Detected branch: prod
2025-12-17 17:33:15 (13656): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-17 17:33:15 (13656): Guest Log: Copying input files
2025-12-17 17:33:17 (13656): Guest Log: Copied input files into RunAtlas.
2025-12-17 17:33:17 (13656): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-17 17:33:17 (13656): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-17 17:33:17 (13656): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-17 17:33:17 (13656): Guest Log: Further information can be found at the LHC@home message board.
2025-12-17 17:33:21 (13656): Guest Log: 00:00:10.008679 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 924 346 000ns (GuestNow=1 766 010 801 042 647 000 ns GuestLast=1 765 992 789 118 301 000 ns fSetTimeLastLoop=true )
2025-12-17 17:34:15 (13656): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-17 17:34:15 (13656): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-17 17:34:15 (13656): Guest Log: 2.6.3.0 1668 1 30168 154125 3 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-17 17:34:16 (13656): Guest Log: copied the webapp to /var/www
2025-12-17 17:34:16 (13656): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-17 17:34:16 (13656): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-17 17:34:16 (13656): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-17 17:34:16 (13656): Guest Log:  *** Starting ATLAS job. (PandaID=6932535289 taskID=47929047) ***
2025-12-17 19:13:07 (13656): Status Report: Elapsed Time: '6000.000000'
2025-12-17 19:13:07 (13656): Status Report: CPU Time: '39835.859375'
2025-12-17 20:16:22 (13656): Guest Log:  *** Job finished ***
2025-12-17 20:16:22 (13656): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:15:55,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:15:55,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:14,990 | INFO     | [monitor] cgroup control has ended
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:16,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776589604672)>', '<ExcThread(monitor, started 139775969302272)>']
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:17,109 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:17,110 | INFO     | [monitor] control thread has ended
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,138 | INFO     | all workflow threads have been joined
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,138 | INFO     | end of generic workflow (traces error code: 0)
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,138 | INFO     | traces error code: 0
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,282 [wrapper] ==== pilot stdout END ====
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,295 [wrapper] ==== wrapper stdout RESUME ====
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,307 [wrapper] pilotpid: 6104
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,320 [wrapper] Pilot exit status: 0
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,417 [wrapper] pandaids: 6932535289
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,517 [wrapper] cleanup supervisor_pilot  8278 6105
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,532 [wrapper] Test setup, not cleaning
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,547 [wrapper] apfmon messages muted
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,558 [wrapper] ==== wrapper stdout END ====
2025-12-17 20:16:22 (13656): Guest Log: 2025-12-18 01:16:21,570 [wrapper] ==== wrapper stderr END ====
2025-12-17 20:16:22 (13656): Guest Log:  *** Error codes and diagnostics ***
2025-12-17 20:16:22 (13656): Guest Log:     "exeErrorCode": 0,
2025-12-17 20:16:22 (13656): Guest Log:     "exeErrorDiag": "",
2025-12-17 20:16:22 (13656): Guest Log:     "pilotErrorCode": 0,
2025-12-17 20:16:22 (13656): Guest Log:     "pilotErrorDiag": "",
2025-12-17 20:16:22 (13656): Guest Log:  *** Listing of results directory ***
2025-12-17 20:16:22 (13656): Guest Log: total 233700
2025-12-17 20:16:22 (13656): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 17 14:12 pilot3.tar.gz
2025-12-17 20:16:22 (13656): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 17 14:14 queuedata.json
2025-12-17 20:16:22 (13656): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 17 14:17 runpilot2-wrapper.sh
2025-12-17 20:16:22 (13656): Guest Log: -rwxr-xr-x. 1 atlas atlas      8903 Dec 17 22:33 init_data.xml
2025-12-17 20:16:22 (13656): Guest Log: -rwxr-xr-x. 1 atlas atlas    592410 Dec 17 22:33 input.tar.gz
2025-12-17 20:16:22 (13656): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 17 22:33 start_atlas.sh
2025-12-17 20:16:22 (13656): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 17 22:33 EVNT.47929045._000018.pool.root.1 -> /data/./ATLAS.root_0
2025-12-17 20:16:22 (13656): Guest Log: -rw-r--r--. 1 atlas atlas      2590 Dec 17 22:34 pandaJob.out
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas    988134 Dec 17 22:35 agis_schedconf.cvmfs.json
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 17 22:35 agis_ddmendpoints.agis.ALL.json
2025-12-17 20:16:22 (13656): Guest Log: drwx------. 5 atlas atlas      4096 Dec 17 22:35 pilot3
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas 232152773 Dec 18 01:14 HITS.47929047._000437.pool.root.1
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas        95 Dec 18 01:14 pilot_heartbeat.json
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas      1038 Dec 18 01:15 memory_monitor_summary.json
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas    388721 Dec 18 01:15 log.47929047._000437.job.log.tgz.1
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas      7834 Dec 18 01:15 heartbeat.json
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas      4805 Dec 18 01:16 pilotlog.txt
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas   1266795 Dec 18 01:16 log.47929047._000437.job.log.1
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas       357 Dec 18 01:16 output.list
2025-12-17 20:16:22 (13656): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 18 01:16 runtime_log
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas   1679360 Dec 18 01:16 result.tar.gz
2025-12-17 20:16:22 (13656): Guest Log: -rw-r--r--. 1 atlas atlas      8758 Dec 18 01:16 runtime_log.err
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas       659 Dec 18 01:16 85iNDm5V7p8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3IcKDmPCmrQm.diag
2025-12-17 20:16:22 (13656): Guest Log: Looking for outputfile HITS.47929047._000437.pool.root.1
2025-12-17 20:16:22 (13656): Guest Log: HITS file was successfully produced
2025-12-17 20:16:22 (13656): Guest Log: -rw-------. 1 atlas atlas 232152773 Dec 18 01:14 /home/atlas/RunAtlas/HITS.47929047._000437.pool.root.1
2025-12-17 20:16:23 (13656): Guest Log: Successfully finished the ATLAS job!
2025-12-17 20:16:23 (13656): Guest Log: Copying the results back to the shared directory!
2025-12-17 20:16:23 (13656): Guest Log:  *** Contents of shared directory: ***
2025-12-17 20:16:23 (13656): Guest Log: total 513404
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root 291266810 Dec 17 22:32 ATLAS.root_0
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root 232152773 Dec 18 01:16 HITS.pool.root.1
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root      8903 Dec 17 22:32 init_data.xml
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root    592410 Dec 17 20:20 input.tar.gz
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root   1679360 Dec 18 01:16 result.tar.gz
2025-12-17 20:16:23 (13656): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 17 20:20 start_atlas.sh
2025-12-17 20:16:23 (13656): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-17 20:16:23 (13656): VM Completion File Detected.
2025-12-17 20:16:23 (13656): Powering off VM.
2025-12-17 20:16:25 (13656): Successfully stopped VM.
2025-12-17 20:16:25 (13656): Deregistering VM. (boinc_998a6548ee3f9843, slot#0)
2025-12-17 20:16:25 (13656): Removing network bandwidth throttle group from VM.
2025-12-17 20:16:26 (13656): Removing VM from VirtualBox.
2025-12-17 20:16:31 (13656): called boinc_finish(0)

</stderr_txt>
]]>

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