Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:59:41 (453335): wrapper (7.7.26015): starting
11:59:41 (453335): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 11:59:41] Arguments: --nthreads 12
[2025-12-17 11:59:41] Threads: 12
[2025-12-17 11:59:41] Checking for CVMFS
[2025-12-17 11:59:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 11:59:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 11:59:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 11:59:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 11:59:42] 2.11.5.0 3627452 58766 301460 154121 1 928 31421381 45568001 12081 130560 0 476926866 99.787 304905437 22880 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-12-17 11:59:42] CVMFS is ok
[2025-12-17 11:59:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 11:59:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 11:59:42] Further information can be found at the LHC@home message board.
[2025-12-17 11:59:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 11:59:42] Checking for apptainer binary...
[2025-12-17 11:59:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 11:59:42] Running /usr/bin/apptainer --version
[2025-12-17 11:59:42] apptainer version 1.4.1-1.el9
[2025-12-17 11:59:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 11:59:42] wns0050.triumf.lcg
[2025-12-17 11:59:42] apptainer works
[2025-12-17 11:59:42] Set ATHENA_PROC_NUMBER=12
[2025-12-17 11:59:42] Set ATHENA_CORE_NUMBER=12
[2025-12-17 11:59:42] Starting ATLAS job with PandaID=6932419841
[2025-12-17 11:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 12:03:01]  *** The last 200 lines of the pilot log: ***
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | found no stored workdir sizes
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | will not add max space = 0 B to job metrics
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | wrong length of table data, x=[1766001615.0], y=[1059.0] (must be same and length>=4)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . Timing measurements:
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . get job = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . initial setup = 2 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload setup = 4 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-in = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload execution = 15 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-out = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . log creation = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6932419841/pilotlog.txt
[2025-12-17 12:03:01] 2025-12-17 20:02:29,477 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-17 12:03:01] - Log from pilotlog.txt -
[2025-12-17 12:03:01] 2025-12-17 20:02:29,464 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 12:03:01] 2025-12-17 20:02:29,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | found no stored workdir sizes
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | will not add max space = 0 B to job metrics
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | wrong length of table data, x=[1766001615.0], y=[1059.0] (must be same and length>=4)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . Timing measurements:
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . get job = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . initial setup = 2 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload setup = 4 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-in = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload execution = 15 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-out = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . log creation = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6932419841/pilotlog.txt
[2025-12-17 12:03:01] 2025-12-17 20:02:29,477 | WARNING  | 
[2025-12-17 12:03:01] [begin log extracts]
[2025-12-17 12:03:01] - Log from pilotlog.txt -
[2025-12-17 12:03:01] 2025-12-17 20:02:29,464 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 12:03:01] 2025-12-17 20:02:29,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | found no stored workdir sizes
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | will not add max space = 0 B to job metrics
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | WARNING  | wrong length of table data, x=[1766001615.0], y=[1059.0] (must be same and length>=4)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | could have reported an average CPU frequency of 2622 MHz (4 samples)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,465 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . Timing measurements:
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . get job = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . initial setup = 2 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload setup = 4 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-in = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . payload execution = 15 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . stage-out = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | . log creation = 0 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | ..............................
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-17 12:03:01] 2025-12-17 20:02:29,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6932419841/pilotlog.txt
[2025-12-17 12:03:01] [end log extracts]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,477 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,478 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | 
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | job summary report
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | --------------------------------------------------
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | PanDA job id: 6932419841
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | task id: 47929112
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-17 12:00:22,542 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | pilot state: failed 
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | transexitcode: 65
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | exeerrorcode: 65
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | exitcode: 65
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,537 | INFO     | cpuconsumptiontime: 17 s
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | nevents: 0
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | neventsw: 0
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | pid: 463624
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | pgrp: 463624
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | corecount: 12
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | event service: False
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | sizes: {0: 2283954, 1: 2284153, 4: 2284415, 11: 2284443, 23: 2307587, 24: 2312035, 143: 2312173}
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | --------------------------------------------------
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | 
[2025-12-17 12:03:01] 2025-12-17 20:02:29,538 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-17 12:03:01] 2025-12-17 20:02:29,553 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 12:03:01] 2025-12-17 20:02:29,554 | INFO     | job 6932419841 has completed (purged errors)
[2025-12-17 12:03:01] 2025-12-17 20:02:29,555 | INFO     | overall cleanup function is called
[2025-12-17 12:03:01] 2025-12-17 20:02:30,561 | INFO     | --- collectZombieJob: --- 10, [463624]
[2025-12-17 12:03:01] 2025-12-17 20:02:30,561 | INFO     | zombie collector waiting for pid 463624
[2025-12-17 12:03:01] 2025-12-17 20:02:30,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 12:03:01] 2025-12-17 20:02:30,561 | INFO     | collected zombie processes
[2025-12-17 12:03:01] 2025-12-17 20:02:30,561 | INFO     | will attempt to kill all subprocesses of pid=463624
[2025-12-17 12:03:01] 2025-12-17 20:02:30,718 | INFO     | process IDs to be killed: [463624] (in reverse order)
[2025-12-17 12:03:01] 2025-12-17 20:02:30,775 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 12:03:01] 2025-12-17 20:02:30,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 12:03:01] 2025-12-17 20:02:30,782 | INFO     | did not find any defunct processes belonging to 463624
[2025-12-17 12:03:01] 2025-12-17 20:02:30,788 | INFO     | did not find any defunct processes belonging to 463624
[2025-12-17 12:03:01] 2025-12-17 20:02:30,788 | INFO     | ready for new job
[2025-12-17 12:03:01] 2025-12-17 20:02:30,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 12:03:01] 2025-12-17 20:02:30,789 | INFO     | ***************************************
[2025-12-17 12:03:01] 2025-12-17 20:02:30,789 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 12:03:01] 2025-12-17 20:02:30,789 | INFO     | ***************************************
[2025-12-17 12:03:01] 2025-12-17 20:02:30,790 | INFO     | 
[2025-12-17 12:03:01] 2025-12-17 20:02:30,791 | INFO     | architecture information:
[2025-12-17 12:03:01] 2025-12-17 20:02:30,792 | INFO     | executing command: cat /etc/os-release
[2025-12-17 12:03:01] 2025-12-17 20:02:30,803 | INFO     | cat /etc/os-release:
[2025-12-17 12:03:01] NAME="CentOS Linux"
[2025-12-17 12:03:01] VERSION="7 (Core)"
[2025-12-17 12:03:01] ID="centos"
[2025-12-17 12:03:01] ID_LIKE="rhel fedora"
[2025-12-17 12:03:01] VERSION_ID="7"
[2025-12-17 12:03:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 12:03:01] ANSI_COLOR="0;31"
[2025-12-17 12:03:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 12:03:01] HOME_URL="https://www.centos.org/"
[2025-12-17 12:03:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 12:03:01] 
[2025-12-17 12:03:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 12:03:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 12:03:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 12:03:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 12:03:01] 
[2025-12-17 12:03:01] 2025-12-17 20:02:30,804 | INFO     | ***************************************
[2025-12-17 12:03:01] 2025-12-17 20:02:31,307 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-17 12:03:01] 2025-12-17 20:02:31,319 | INFO     | sufficient remaining disk space (1969914642432 B)
[2025-12-17 12:03:01] 2025-12-17 20:02:31,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 12:03:01] 2025-12-17 20:02:31,319 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 12:03:01] 2025-12-17 20:02:31,319 | INFO     | update_server=False
[2025-12-17 12:03:01] 2025-12-17 20:02:31,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 12:03:01] 2025-12-17 20:02:31,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 12:03:01] 2025-12-17 20:02:31,320 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:03:01] 2025-12-17 20:02:31,357 | INFO     | all data control threads have been joined
[2025-12-17 12:03:01] 2025-12-17 20:02:31,767 | INFO     | all job control threads have been joined
[2025-12-17 12:03:01] 2025-12-17 20:02:31,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:03:01] 2025-12-17 20:02:31,797 | INFO     | aborting loop
[2025-12-17 12:03:01] 2025-12-17 20:02:32,325 | INFO     | [job] retrieve thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:32,326 | INFO     | [job] queue monitor thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:32,359 | INFO     | all payload control threads have been joined
[2025-12-17 12:03:01] 2025-12-17 20:02:32,362 | INFO     | [data] control thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:32,640 | INFO     | [data] copytool_in thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:32,772 | INFO     | [job] control thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:32,802 | INFO     | [job] job monitor thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,152 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,304 | INFO     | [job] validate thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,325 | INFO     | [data] copytool_out thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 12:03:01] 2025-12-17 20:02:33,365 | INFO     | [payload] control thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,428 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,481 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,617 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,730 | INFO     | [payload] failed_post thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:33,854 | INFO     | [payload] validate_post thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:37,350 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 12:03:01] 2025-12-17 20:02:51,097 | INFO     | [monitor] cgroup control has ended
[2025-12-17 12:03:01] 2025-12-17 20:02:53,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189686724416)>', '<ExcThread(monitor, started 140188873389824)>']
[2025-12-17 12:03:01] 2025-12-17 20:02:58,063 | INFO     | all workflow threads have been joined
[2025-12-17 12:03:01] 2025-12-17 20:02:58,063 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 12:03:01] 2025-12-17 20:02:58,064 | INFO     | traces error code: 0
[2025-12-17 12:03:01] 2025-12-17 20:02:58,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 12:03:01] 2025-12-17 20:03:00,840 | INFO     | PID=456993 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 12:03:01] 2025-12-17 20:03:00,840 | INFO     | .. there are 17 such processes running
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | CRITICAL | thread 'MainThread' is not alive
[2025-12-17 12:03:01] 2025-12-17 20:03:00,841 | INFO     | [monitor] control thread has ended
[2025-12-17 12:03:01] 2025-12-17 20:03:00,971 [wrapper] ==== pilot stdout END ====
[2025-12-17 12:03:01] 2025-12-17 20:03:00,973 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 12:03:01] 2025-12-17 20:03:00,975 [wrapper] pilotpid: 456993
[2025-12-17 12:03:01] 2025-12-17 20:03:00,978 [wrapper] Pilot exit status: 0
[2025-12-17 12:03:01] 2025-12-17 20:03:00,985 [wrapper] pandaids: 6932419841
[2025-12-17 12:03:01] 2025-12-17 20:03:01,021 [wrapper] cleanup supervisor_pilot  456999 456994
[2025-12-17 12:03:01] 2025-12-17 20:03:01,023 [wrapper] Test setup, not cleaning
[2025-12-17 12:03:01] 2025-12-17 20:03:01,025 [wrapper] apfmon messages muted
[2025-12-17 12:03:01] 2025-12-17 20:03:01,026 [wrapper] ==== wrapper stdout END ====
[2025-12-17 12:03:01] 2025-12-17 20:03:01,028 [wrapper] ==== wrapper stderr END ====
[2025-12-17 12:03:01]  *** Error codes and diagnostics ***
[2025-12-17 12:03:01]     "exeErrorCode": 65,
[2025-12-17 12:03:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-17 12:03:01]     "pilotErrorCode": 1305,
[2025-12-17 12:03:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-17 12:03:01]  *** Listing of results directory ***
[2025-12-17 12:03:01] total 290480
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc    579449 Dec 17 06:12 pilot3.tar.gz
[2025-12-17 12:03:01] -rwx------. 1 boinc boinc     36322 Dec 17 06:14 runpilot2-wrapper.sh
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc      5112 Dec 17 06:14 queuedata.json
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc       100 Dec 17 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 12:03:01] -rwxr-xr-x. 1 boinc boinc      7986 Dec 17 11:59 run_atlas
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc       105 Dec 17 11:59 job.xml
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc      6595 Dec 17 11:59 init_data.xml
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc 293339110 Dec 17 11:59 EVNT.47929110._000001.pool.root.1
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc     15847 Dec 17 11:59 start_atlas.sh
[2025-12-17 12:03:01] drwxrwx--x. 2 boinc boinc      4096 Dec 17 11:59 shared
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc    592415 Dec 17 11:59 input.tar.gz
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc         0 Dec 17 11:59 boinc_lockfile
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc      2651 Dec 17 11:59 pandaJob.out
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc    988136 Dec 17 11:59 agis_schedconf.cvmfs.json
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc   1516240 Dec 17 11:59 agis_ddmendpoints.agis.ALL.json
[2025-12-17 12:03:01] drwx------. 5 boinc boinc      4096 Dec 17 11:59 pilot3
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc       522 Dec 17 12:00 boinc_task_state.xml
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc       952 Dec 17 12:00 memory_monitor_summary.json
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc     20674 Dec 17 12:00 log.47929112._000018.job.log.tgz.1
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc      8377 Dec 17 12:02 heartbeat.json
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc      8192 Dec 17 12:02 boinc_mmap_file
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc        22 Dec 17 12:02 wrapper_checkpoint.txt
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc       892 Dec 17 12:03 pilotlog.txt
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc        95 Dec 17 12:03 pilot_heartbeat.json
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc     81672 Dec 17 12:03 log.47929112._000018.job.log.1
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc       188 Dec 17 12:03 output.list
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc       620 Dec 17 12:03 runtime_log
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc    122880 Dec 17 12:03 result.tar.gz
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc      8636 Dec 17 12:03 runtime_log.err
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc       645 Dec 17 12:03 gqBNDmXT7p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmneXKDm32p9No.diag
[2025-12-17 12:03:01] -rw-r--r--. 1 boinc boinc     21615 Dec 17 12:03 stderr.txt
[2025-12-17 12:03:01] No HITS result produced
[2025-12-17 12:03:01]  *** Contents of shared directory: ***
[2025-12-17 12:03:01] total 287184
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc 293339110 Dec 17 11:59 ATLAS.root_0
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc     15847 Dec 17 11:59 start_atlas.sh
[2025-12-17 12:03:01] -rw-r--r--. 2 boinc boinc    592415 Dec 17 11:59 input.tar.gz
[2025-12-17 12:03:01] -rw-------. 1 boinc boinc    122880 Dec 17 12:03 result.tar.gz
12:03:02 (453335): run_atlas exited; CPU time 21.207222
12:03:02 (453335): called boinc_finish(0)

</stderr_txt>
]]>

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