Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:10:51 (2428437): wrapper (7.7.26015): starting
09:10:51 (2428437): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 09:10:51] Arguments: --nthreads 3
[2025-12-18 09:10:51] Threads: 3
[2025-12-18 09:10:51] Checking for CVMFS
[2025-12-18 09:10:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 09:10:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 09:10:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 09:10:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 09:10:51] 2.9.2.0 541361 7236 86028 154139 2 57 20627846 36864001 0 130560 0 4963744 99.990 256256 17051 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 09:10:51] CVMFS is ok
[2025-12-18 09:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 09:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 09:10:51] Further information can be found at the LHC@home message board.
[2025-12-18 09:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 09:10:51] Checking for apptainer binary...
[2025-12-18 09:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 09:10:51] Running /usr/bin/apptainer --version
[2025-12-18 09:10:51] apptainer version 1.4.1-1.1
[2025-12-18 09:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 09:10:51] thA335b
[2025-12-18 09:10:51] apptainer works
[2025-12-18 09:10:51] Set ATHENA_PROC_NUMBER=3
[2025-12-18 09:10:51] Set ATHENA_CORE_NUMBER=3
[2025-12-18 09:10:51] Starting ATLAS job with PandaID=6931735029
[2025-12-18 09:10:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 10:37:10]  *** The last 200 lines of the pilot log: ***
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | job 6931735029 has completed (purged errors)
[2025-12-18 10:37:10] 2025-12-18 09:36:26,878 | INFO     | overall cleanup function is called
[2025-12-18 10:37:10] 2025-12-18 09:36:26,911 | INFO     | number of running child processes to parent process 2438621: 1
[2025-12-18 10:37:10] 2025-12-18 09:36:26,911 | INFO     | maximum number of monitored processes: 6
[2025-12-18 10:37:10] 2025-12-18 09:36:26,911 | INFO     | aborting job monitoring since job object (job id=6931735029) has expired
[2025-12-18 10:37:10] 2025-12-18 09:36:27,885 | INFO     | --- collectZombieJob: --- 10, [2438621]
[2025-12-18 10:37:10] 2025-12-18 09:36:27,885 | INFO     | zombie collector waiting for pid 2438621
[2025-12-18 10:37:10] 2025-12-18 09:36:27,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 10:37:10] 2025-12-18 09:36:27,885 | INFO     | collected zombie processes
[2025-12-18 10:37:10] 2025-12-18 09:36:27,885 | INFO     | will attempt to kill all subprocesses of pid=2438621
[2025-12-18 10:37:10] 2025-12-18 09:36:27,928 | INFO     | process IDs to be killed: [2438621] (in reverse order)
[2025-12-18 10:37:10] 2025-12-18 09:36:27,952 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 10:37:10] 2025-12-18 09:36:27,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 10:37:10] 2025-12-18 09:36:27,954 | INFO     | did not find any defunct processes belonging to 2438621
[2025-12-18 10:37:10] 2025-12-18 09:36:27,955 | INFO     | did not find any defunct processes belonging to 2438621
[2025-12-18 10:37:10] 2025-12-18 09:36:27,955 | INFO     | ready for new job
[2025-12-18 10:37:10] 2025-12-18 09:36:27,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | ***************************************
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | ***************************************
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | 
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | architecture information:
[2025-12-18 10:37:10] 2025-12-18 09:36:27,956 | INFO     | executing command: cat /etc/os-release
[2025-12-18 10:37:10] 2025-12-18 09:36:27,965 | INFO     | cat /etc/os-release:
[2025-12-18 10:37:10] NAME="CentOS Linux"
[2025-12-18 10:37:10] VERSION="7 (Core)"
[2025-12-18 10:37:10] ID="centos"
[2025-12-18 10:37:10] ID_LIKE="rhel fedora"
[2025-12-18 10:37:10] VERSION_ID="7"
[2025-12-18 10:37:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 10:37:10] ANSI_COLOR="0;31"
[2025-12-18 10:37:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 10:37:10] HOME_URL="https://www.centos.org/"
[2025-12-18 10:37:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 10:37:10] 
[2025-12-18 10:37:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 10:37:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 10:37:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 10:37:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 10:37:10] 
[2025-12-18 10:37:10] 2025-12-18 09:36:27,966 | INFO     | ***************************************
[2025-12-18 10:37:10] 2025-12-18 09:36:28,469 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 10:37:10] 2025-12-18 09:36:28,482 | INFO     | sufficient remaining disk space (384508624896 B)
[2025-12-18 10:37:10] 2025-12-18 09:36:28,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 10:37:10] 2025-12-18 09:36:28,482 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | INFO     | update_server=False
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 10:37:10] 2025-12-18 09:36:28,483 | INFO     | aborting loop
[2025-12-18 10:37:10] 2025-12-18 09:36:28,547 | INFO     | all data control threads have been joined
[2025-12-18 10:37:10] 2025-12-18 09:36:28,956 | INFO     | all payload control threads have been joined
[2025-12-18 10:37:10] 2025-12-18 09:36:29,488 | INFO     | [job] queue monitor thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,489 | INFO     | [job] retrieve thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,489 | INFO     | [job] job monitor thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,552 | INFO     | [data] control thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,709 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,854 | INFO     | [payload] failed_post thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,857 | INFO     | all job control threads have been joined
[2025-12-18 10:37:10] 2025-12-18 09:36:29,924 | INFO     | [data] copytool_in thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:29,962 | INFO     | [payload] control thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,209 | INFO     | [job] validate thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,275 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,291 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,411 | INFO     | [payload] validate_post thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,489 | INFO     | [data] copytool_out thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:30,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 10:37:10] 2025-12-18 09:36:30,862 | INFO     | [job] control thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:34,610 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:38,879 | INFO     | job.realtimelogging is not enabled
[2025-12-18 10:37:10] 2025-12-18 09:36:39,884 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 10:37:10] 2025-12-18 09:36:58,655 | INFO     | PID=2432166 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 10:37:10] 2025-12-18 09:36:58,655 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 10:37:10] 2025-12-18 09:36:58,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 10:37:10] 2025-12-18 09:36:58,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 10:37:10] 2025-12-18 09:37:03,424 | INFO     | [monitor] cgroup control has ended
[2025-12-18 10:37:10] 2025-12-18 09:37:05,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367858112320)>', '<ExcThread(monitor, started 140367206786816)>']
[2025-12-18 10:37:10] 2025-12-18 09:37:05,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 10:37:10] 2025-12-18 09:37:05,692 | INFO     | [monitor] control thread has ended
[2025-12-18 10:37:10] 2025-12-18 09:37:10,152 | INFO     | all workflow threads have been joined
[2025-12-18 10:37:10] 2025-12-18 09:37:10,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 10:37:10] 2025-12-18 09:37:10,153 | INFO     | traces error code: 0
[2025-12-18 10:37:10] 2025-12-18 09:37:10,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 10:37:10] 2025-12-18 09:37:10,203 [wrapper] ==== pilot stdout END ====
[2025-12-18 10:37:10] 2025-12-18 09:37:10,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 10:37:10] 2025-12-18 09:37:10,208 [wrapper] pilotpid: 2432166
[2025-12-18 10:37:10] 2025-12-18 09:37:10,211 [wrapper] Pilot exit status: 0
[2025-12-18 10:37:10] 2025-12-18 09:37:10,218 [wrapper] pandaids: 6931735029
[2025-12-18 10:37:10] 2025-12-18 09:37:10,235 [wrapper] cleanup supervisor_pilot 2450420 2432167
[2025-12-18 10:37:10] 2025-12-18 09:37:10,238 [wrapper] Test setup, not cleaning
[2025-12-18 10:37:10] 2025-12-18 09:37:10,240 [wrapper] apfmon messages muted
[2025-12-18 10:37:10] 2025-12-18 09:37:10,243 [wrapper] ==== wrapper stdout END ====
[2025-12-18 10:37:10] 2025-12-18 09:37:10,245 [wrapper] ==== wrapper stderr END ====
[2025-12-18 10:37:10]  *** Error codes and diagnostics ***
[2025-12-18 10:37:10]     "exeErrorCode": 0,
[2025-12-18 10:37:10]     "exeErrorDiag": "",
[2025-12-18 10:37:10]     "pilotErrorCode": 0,
[2025-12-18 10:37:10]     "pilotErrorDiag": "",
[2025-12-18 10:37:10]  *** Listing of results directory ***
[2025-12-18 10:37:10] total 339944
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc    579449 Dec 17 02:05 pilot3.tar.gz
[2025-12-18 10:37:10] -rwx------ 1 boinc boinc     36322 Dec 17 02:05 runpilot2-wrapper.sh
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc      5112 Dec 17 02:05 queuedata.json
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc       100 Dec 18 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 10:37:10] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 09:10 run_atlas
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc       105 Dec 18 09:10 job.xml
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc 193275691 Dec 18 09:10 EVNT.47886829._000658.pool.root.1
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc    592407 Dec 18 09:10 input.tar.gz
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc     15847 Dec 18 09:10 start_atlas.sh
[2025-12-18 10:37:10] drwxrwx--x 2 boinc boinc      4096 Dec 18 09:10 shared
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc         0 Dec 18 09:10 boinc_setup_complete
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc      6445 Dec 18 09:10 init_data.xml
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc         0 Dec 18 09:10 boinc_lockfile
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc      2536 Dec 18 09:10 pandaJob.out
[2025-12-18 10:37:10] -rw------- 1 boinc boinc    988102 Dec 18 09:10 agis_schedconf.cvmfs.json
[2025-12-18 10:37:10] -rw------- 1 boinc boinc   1516240 Dec 18 09:10 agis_ddmendpoints.agis.ALL.json
[2025-12-18 10:37:10] drwx------ 5 boinc boinc      4096 Dec 18 09:10 pilot3
[2025-12-18 10:37:10] -rw------- 1 boinc boinc 148931866 Dec 18 10:36 HITS.47886831._016474.pool.root.1
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc       529 Dec 18 10:36 boinc_task_state.xml
[2025-12-18 10:37:10] -rw------- 1 boinc boinc      1016 Dec 18 10:36 memory_monitor_summary.json
[2025-12-18 10:37:10] -rw------- 1 boinc boinc    239213 Dec 18 10:36 log.47886831._016474.job.log.tgz.1
[2025-12-18 10:37:10] -rw------- 1 boinc boinc        95 Dec 18 10:36 pilot_heartbeat.json
[2025-12-18 10:37:10] -rw------- 1 boinc boinc      7741 Dec 18 10:36 heartbeat.json
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc      8192 Dec 18 10:36 boinc_mmap_file
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc        27 Dec 18 10:36 wrapper_checkpoint.txt
[2025-12-18 10:37:10] -rw------- 1 boinc boinc      4824 Dec 18 10:37 pilotlog.txt
[2025-12-18 10:37:10] -rw------- 1 boinc boinc    752055 Dec 18 10:37 log.47886831._016474.job.log.1
[2025-12-18 10:37:10] -rw------- 1 boinc boinc       357 Dec 18 10:37 output.list
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc       620 Dec 18 10:37 runtime_log
[2025-12-18 10:37:10] -rw------- 1 boinc boinc   1013760 Dec 18 10:37 result.tar.gz
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc      8902 Dec 18 10:37 runtime_log.err
[2025-12-18 10:37:10] -rw------- 1 boinc boinc       659 Dec 18 10:37 G15LDmw9up8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnzaKDmhp1yNo.diag
[2025-12-18 10:37:10] -rw-r--r-- 1 boinc boinc     12798 Dec 18 10:37 stderr.txt
[2025-12-18 10:37:10] HITS file was successfully produced:
[2025-12-18 10:37:10] -rw------- 1 boinc boinc 148931866 Dec 18 10:36 shared/HITS.pool.root.1
[2025-12-18 10:37:10]  *** Contents of shared directory: ***
[2025-12-18 10:37:10] total 335788
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc 193275691 Dec 18 09:10 ATLAS.root_0
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc    592407 Dec 18 09:10 input.tar.gz
[2025-12-18 10:37:10] -rw-r--r-- 2 boinc boinc     15847 Dec 18 09:10 start_atlas.sh
[2025-12-18 10:37:10] -rw------- 1 boinc boinc 148931866 Dec 18 10:36 HITS.pool.root.1
[2025-12-18 10:37:10] -rw------- 1 boinc boinc   1013760 Dec 18 10:37 result.tar.gz
10:37:11 (2428437): run_atlas exited; CPU time 14634.761154
10:37:11 (2428437): called boinc_finish(0)

</stderr_txt>
]]>

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