Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:38:31 (21913): wrapper (7.7.26015): starting
21:38:31 (21913): wrapper: running run_atlas (--nthreads 8)
[2025-12-17 21:38:31] Arguments: --nthreads 8
[2025-12-17 21:38:31] Threads: 8
[2025-12-17 21:38:31] Checking for CVMFS
[2025-12-17 21:38:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 21:38:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 21:38:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 21:38:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 21:38:31] 2.11.0.0 4107 6361 67076 154122 1 18 3997638 4096001 917 130560 1 3656260 99.690 1190902 671 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-17 21:38:31] CVMFS is ok
[2025-12-17 21:38:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 21:38:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 21:38:31] Further information can be found at the LHC@home message board.
[2025-12-17 21:38:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 21:38:31] Checking for apptainer binary...
[2025-12-17 21:38:31] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-17 21:38:31] apptainer is not installed, using version from CVMFS
[2025-12-17 21:38:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 21:38:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_10984850/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node020
[2025-12-17 21:38:31] apptainer works
[2025-12-17 21:38:31] Set ATHENA_PROC_NUMBER=8
[2025-12-17 21:38:31] Set ATHENA_CORE_NUMBER=8
[2025-12-17 21:38:31] Starting ATLAS job with PandaID=6931734951
[2025-12-17 21:38:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10984850/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 22:27:08]  *** The last 200 lines of the pilot log: ***
[2025-12-17 22:27:08]  lfn=log.47886831._016396.job.log.tgz.1
[2025-12-17 22:27:08]  mtime=0
[2025-12-17 22:27:08]  protocol_id=None
[2025-12-17 22:27:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 22:27:08]  replicas=None
[2025-12-17 22:27:08]  scope=mc23_13p6TeV
[2025-12-17 22:27:08]  status=None
[2025-12-17 22:27:08]  status_code=0
[2025-12-17 22:27:08]  storage_token=
[2025-12-17 22:27:08]  surl=/tmp/job_10984850/atlas/pilot/slots/0/PanDA_Pilot-6931734951/log.47886831._016396.job.log.tgz.1
[2025-12-17 22:27:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/81/log.47886831._016396.job.log.tgz.1
[2025-12-17 22:27:08]  workdir=None
[2025-12-17 22:27:08] ]
[2025-12-17 22:27:08] 2025-12-17 21:26:34,396 | INFO     | transferring file log.47886831._016396.job.log.tgz.1 from /tmp/job_10984850/atlas/pilot/slots/0/PanDA_Pilot-6931734951/log.47886831._016396.job.log.tgz.1 to /tmp/j
[2025-12-17 22:27:08] 2025-12-17 21:26:34,397 | INFO     | executing command: /usr/bin/env mv /tmp/job_10984850/atlas/pilot/slots/0/PanDA_Pilot-6931734951/log.47886831._016396.job.log.tgz.1 /tmp/job_10984850/atlas/pilot/sl
[2025-12-17 22:27:08] 2025-12-17 21:26:34,404 | INFO     | adding to output.list: log.47886831._016396.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/81/log.47886831._016396.job.log.tg
[2025-12-17 22:27:08] 2025-12-17 21:26:34,405 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 22:27:08] 2025-12-17 21:26:34,405 | INFO     | summary of transferred files:
[2025-12-17 22:27:08] 2025-12-17 21:26:34,405 | INFO     |  -- lfn=log.47886831._016396.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 22:27:08] 2025-12-17 21:26:34,405 | INFO     | stage-out finished correctly
[2025-12-17 22:27:08] 2025-12-17 21:26:34,528 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | job 6931734951 has state=finished
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | preparing for final server update for job 6931734951 in state='finished'
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | this job has now completed (state=finished)
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | log transfer has been attempted: DONE
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | job 6931734951 has finished - writing final server update
[2025-12-17 22:27:08] 2025-12-17 21:26:34,573 | INFO     | total number of processed events: 400 (read)
[2025-12-17 22:27:08] 2025-12-17 21:26:34,574 | INFO     | executing command: lscpu
[2025-12-17 22:27:08] 2025-12-17 21:26:34,604 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 22:27:08] 2025-12-17 21:26:35,231 | INFO     | time since job start (2879s) is within the limit (174528.0s)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,009 | WARNING  | process 2654 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 22:27:08] 2025-12-17 21:26:36,009 | INFO     | using path: /tmp/job_10984850/atlas/pilot/slots/0/PanDA_Pilot-6931734951/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,101 | INFO     | number of running child processes to parent process 2654: 1
[2025-12-17 22:27:08] 2025-12-17 21:26:36,101 | INFO     | maximum number of monitored processes: 6
[2025-12-17 22:27:08] 2025-12-17 21:26:36,413 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 22:27:08] 2025-12-17 21:26:36,417 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2487.30653125
[2025-12-17 22:27:08] 2025-12-17 21:26:36,422 | INFO     | using path: /tmp/job_10984850/atlas/pilot/slots/0/PanDA_Pilot-6931734951/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,422 | INFO     | extracted standard info from prmon json
[2025-12-17 22:27:08] 2025-12-17 21:26:36,422 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 22:27:08] 2025-12-17 21:26:36,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 22:27:08] 2025-12-17 21:26:36,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | fitting pss+swap vs Time
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | sum of square deviations: 19832930.0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | sum of deviations: -1539414300.0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | mean x: 1766005428.5
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | mean y: 2681902.65
[2025-12-17 22:27:08] 2025-12-17 21:26:36,423 | INFO     | intersect: 137078444813.65343
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | chi2: 0.023694454233639615
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | current memory leak: -77.62 B/s (using 40 data points, chi2=0.02)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | could have reported an average CPU frequency of 2512 MHz (5 samples)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | ..............................
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . Timing measurements:
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . get job = 0 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . initial setup = 1 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . payload setup = 2 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . stage-in = 0 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . payload execution = 2859 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . stage-out = 0 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | . log creation = 0 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,424 | INFO     | ..............................
[2025-12-17 22:27:08] 2025-12-17 21:26:36,472 | INFO     | 
[2025-12-17 22:27:08] 2025-12-17 21:26:36,472 | INFO     | job summary report
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | --------------------------------------------------
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | PanDA job id: 6931734951
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | task id: 47886831
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | errors: (none)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | pilot state: finished 
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | transexitcode: 0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | exeerrorcode: 0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | exeerrordiag: 
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | exitcode: 0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | exitmsg: OK
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | cpuconsumptiontime: 20825 s
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | nevents: 400
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | neventsw: 0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | pid: 2654
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | pgrp: 2654
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | corecount: 8
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | event service: False
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | sizes: {0: 2284119, 2: 2284381, 11: 2284409, 2865: 2318893, 2866: 2318893, 2867: 2319119}
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | --------------------------------------------------
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | 
[2025-12-17 22:27:08] 2025-12-17 21:26:36,473 | INFO     | executing command: ls -lF /tmp/job_10984850/atlas/pilot/slots/0
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | job 6931734951 has completed (purged errors)
[2025-12-17 22:27:08] 2025-12-17 21:26:36,483 | INFO     | overall cleanup function is called
[2025-12-17 22:27:08] 2025-12-17 21:26:37,489 | INFO     | --- collectZombieJob: --- 10, [2654]
[2025-12-17 22:27:08] 2025-12-17 21:26:37,489 | INFO     | zombie collector waiting for pid 2654
[2025-12-17 22:27:08] 2025-12-17 21:26:37,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 22:27:08] 2025-12-17 21:26:37,489 | INFO     | collected zombie processes
[2025-12-17 22:27:08] 2025-12-17 21:26:37,489 | INFO     | will attempt to kill all subprocesses of pid=2654
[2025-12-17 22:27:08] 2025-12-17 21:26:37,581 | INFO     | process IDs to be killed: [2654] (in reverse order)
[2025-12-17 22:27:08] 2025-12-17 21:26:37,611 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 22:27:08] 2025-12-17 21:26:37,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 22:27:08] 2025-12-17 21:26:37,615 | INFO     | did not find any defunct processes belonging to 2654
[2025-12-17 22:27:08] 2025-12-17 21:26:37,617 | INFO     | did not find any defunct processes belonging to 2654
[2025-12-17 22:27:08] 2025-12-17 21:26:37,617 | INFO     | ready for new job
[2025-12-17 22:27:08] 2025-12-17 21:26:37,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 22:27:08] 2025-12-17 21:26:37,618 | INFO     | ***************************************
[2025-12-17 22:27:08] 2025-12-17 21:26:37,618 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 22:27:08] 2025-12-17 21:26:37,618 | INFO     | ***************************************
[2025-12-17 22:27:08] 2025-12-17 21:26:37,618 | INFO     | 
[2025-12-17 22:27:08] 2025-12-17 21:26:37,632 | INFO     | architecture information:
[2025-12-17 22:27:08] 2025-12-17 21:26:37,633 | INFO     | executing command: cat /etc/os-release
[2025-12-17 22:27:08] 2025-12-17 21:26:37,638 | INFO     | cat /etc/os-release:
[2025-12-17 22:27:08] NAME="CentOS Linux"
[2025-12-17 22:27:08] VERSION="7 (Core)"
[2025-12-17 22:27:08] ID="centos"
[2025-12-17 22:27:08] ID_LIKE="rhel fedora"
[2025-12-17 22:27:08] VERSION_ID="7"
[2025-12-17 22:27:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 22:27:08] ANSI_COLOR="0;31"
[2025-12-17 22:27:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 22:27:08] HOME_URL="https://www.centos.org/"
[2025-12-17 22:27:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 22:27:08] 
[2025-12-17 22:27:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 22:27:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 22:27:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 22:27:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 22:27:08] 
[2025-12-17 22:27:08] 2025-12-17 21:26:37,638 | INFO     | ***************************************
[2025-12-17 22:27:08] 2025-12-17 21:26:38,141 | INFO     | executing command: df -mP /tmp/job_10984850/atlas/pilot/slots/0
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | INFO     | sufficient remaining disk space (224926892032 B)
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | INFO     | update_server=False
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 22:27:08] 2025-12-17 21:26:38,147 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:27:08] 2025-12-17 21:26:38,282 | INFO     | all data control threads have been joined
[2025-12-17 22:27:08] 2025-12-17 21:26:38,604 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 22:27:08] 2025-12-17 21:26:38,604 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 22:27:08] 2025-12-17 21:26:38,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:27:08] 2025-12-17 21:26:38,604 | INFO     | will abort loop
[2025-12-17 22:27:08] 2025-12-17 21:26:39,152 | INFO     | [job] retrieve thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,152 | INFO     | [job] queue monitor thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,221 | INFO     | [data] copytool_in thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,287 | INFO     | [data] control thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,491 | INFO     | all payload control threads have been joined
[2025-12-17 22:27:08] 2025-12-17 21:26:39,511 | INFO     | all job control threads have been joined
[2025-12-17 22:27:08] 2025-12-17 21:26:39,523 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,609 | INFO     | [job] job monitor thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:39,876 | INFO     | [payload] validate_post thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,006 | INFO     | [job] validate thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,068 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,152 | INFO     | [data] copytool_out thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,343 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,497 | INFO     | [payload] control thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,516 | INFO     | [job] control thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 22:27:08] 2025-12-17 21:26:40,652 | INFO     | [payload] failed_post thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:40,918 | INFO     | [monitor] cgroup control has ended
[2025-12-17 22:27:08] 2025-12-17 21:26:44,583 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:49,151 | INFO     | job.realtimelogging is not enabled
[2025-12-17 22:27:08] 2025-12-17 21:26:50,156 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 22:27:08] 2025-12-17 21:26:50,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-17 22:27:08] 2025-12-17 21:26:55,891 | INFO     | all workflow threads have been joined
[2025-12-17 22:27:08] 2025-12-17 21:26:55,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 22:27:08] 2025-12-17 21:26:55,892 | INFO     | traces error code: 0
[2025-12-17 22:27:08] 2025-12-17 21:26:55,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 22:27:08] 2025-12-17 21:27:08,410 | INFO     | PID=26667 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-17 22:27:08] 2025-12-17 21:27:08,410 | INFO     | .. there are 2 such processes running
[2025-12-17 22:27:08] 2025-12-17 21:27:08,411 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 22:27:08] 2025-12-17 21:27:08,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 22:27:08] 2025-12-17 21:27:08,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 22:27:08] 2025-12-17 21:27:08,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 22:27:08] 2025-12-17 21:27:08,411 | INFO     | [monitor] control thread has ended
[2025-12-17 22:27:08] 2025-12-17 21:27:08,463 [wrapper] ==== pilot stdout END ====
[2025-12-17 22:27:08] 2025-12-17 21:27:08,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 22:27:08] 2025-12-17 21:27:08,466 [wrapper] pilotpid: 26667
[2025-12-17 22:27:08] 2025-12-17 21:27:08,467 [wrapper] Pilot exit status: 0
[2025-12-17 22:27:08] 2025-12-17 21:27:08,471 [wrapper] pandaids: 6931734951
[2025-12-17 22:27:08] 2025-12-17 21:27:08,491 [wrapper] cleanup supervisor_pilot 19230 26668
[2025-12-17 22:27:08] 2025-12-17 21:27:08,492 [wrapper] Test setup, not cleaning
[2025-12-17 22:27:08] 2025-12-17 21:27:08,493 [wrapper] apfmon messages muted
[2025-12-17 22:27:08] 2025-12-17 21:27:08,494 [wrapper] ==== wrapper stdout END ====
[2025-12-17 22:27:08] 2025-12-17 21:27:08,495 [wrapper] ==== wrapper stderr END ====
[2025-12-17 22:27:08]  *** Error codes and diagnostics ***
[2025-12-17 22:27:08]     "exeErrorCode": 0,
[2025-12-17 22:27:08]     "exeErrorDiag": "",
[2025-12-17 22:27:08]     "pilotErrorCode": 0,
[2025-12-17 22:27:08]     "pilotErrorDiag": "",
[2025-12-17 22:27:08]  *** Listing of results directory ***
[2025-12-17 22:27:08] total 333180
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    579449 Dec 17 02:05 pilot3.tar.gz
[2025-12-17 22:27:08] -rwx------ 1 mf493845 unix-user     36322 Dec 17 02:08 runpilot2-wrapper.sh
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      5112 Dec 17 02:10 queuedata.json
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       100 Dec 17 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 22:27:08] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 17 20:50 run_atlas
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       105 Dec 17 20:50 job.xml
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user 189878564 Dec 17 21:38 EVNT.47886829._000654.pool.root.1
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 17 21:38 start_atlas.sh
[2025-12-17 22:27:08] drwxrwx--x 2 mf493845 unix-user       100 Dec 17 21:38 shared
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user    592411 Dec 17 21:38 input.tar.gz
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      6390 Dec 17 21:38 init_data.xml
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user         0 Dec 17 21:38 boinc_setup_complete
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      8192 Dec 17 21:38 boinc_mmap_file
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user         0 Dec 17 21:38 boinc_lockfile
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      2539 Dec 17 21:38 pandaJob.out
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    988150 Dec 17 21:38 agis_schedconf.cvmfs.json
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user   1516240 Dec 17 21:38 agis_ddmendpoints.agis.ALL.json
[2025-12-17 22:27:08] drwx------ 5 mf493845 unix-user       440 Dec 17 21:38 pilot3
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user        95 Dec 17 22:26 pilot_heartbeat.json
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user 145876251 Dec 17 22:26 HITS.47886831._016396.pool.root.1
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      1017 Dec 17 22:26 memory_monitor_summary.json
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    311280 Dec 17 22:26 log.47886831._016396.job.log.tgz.1
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      7773 Dec 17 22:26 heartbeat.json
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       820 Dec 17 22:27 pilotlog.txt
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    457728 Dec 17 22:27 log.47886831._016396.job.log.1
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       357 Dec 17 22:27 output.list
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       620 Dec 17 22:27 runtime_log
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    788480 Dec 17 22:27 result.tar.gz
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user      9220 Dec 17 22:27 runtime_log.err
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user       644 Dec 17 22:27 9JkMDm1Cvp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUdWKDmUqUqyn.diag
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user     22105 Dec 17 22:27 stderr.txt
[2025-12-17 22:27:08] HITS file was successfully produced:
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user 145876251 Dec 17 22:26 shared/HITS.pool.root.1
[2025-12-17 22:27:08]  *** Contents of shared directory: ***
[2025-12-17 22:27:08] total 329260
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user 189878564 Dec 17 21:38 ATLAS.root_0
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 17 21:38 start_atlas.sh
[2025-12-17 22:27:08] -rw-r--r-- 2 mf493845 unix-user    592411 Dec 17 21:38 input.tar.gz
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user 145876251 Dec 17 22:26 HITS.pool.root.1
[2025-12-17 22:27:08] -rw------- 1 mf493845 unix-user    788480 Dec 17 22:27 result.tar.gz
22:27:10 (21913): run_atlas exited; CPU time 20859.396472
22:27:10 (21913): called boinc_finish(0)

</stderr_txt>
]]>

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