Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:57:06 (24562): wrapper (7.7.26015): starting
02:57:06 (24562): wrapper: running run_atlas (--nthreads 8)
[2025-12-18 02:57:06] Arguments: --nthreads 8
[2025-12-18 02:57:06] Threads: 8
[2025-12-18 02:57:06] Checking for CVMFS
[2025-12-18 02:57:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 02:57:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 02:57:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 02:57:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 02:57:09] 2.11.2.0 6904 3105 65988 154129 1 127 14086279 25165824 4487 130560 0 2341877 99.970 584104 2233 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-18 02:57:09] CVMFS is ok
[2025-12-18 02:57:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 02:57:09] Checking for apptainer binary...
[2025-12-18 02:57:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 02:57:09] Running /usr/bin/apptainer --version
[2025-12-18 02:57:09] apptainer version 1.3.2-1.el7
[2025-12-18 02:57:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 02:57:15] cg-vwn474.simple-grid.lan
[2025-12-18 02:57:15] apptainer works
[2025-12-18 02:57:15] Set ATHENA_PROC_NUMBER=8
[2025-12-18 02:57:15] Set ATHENA_CORE_NUMBER=8
[2025-12-18 02:57:15] Starting ATLAS job with PandaID=6931732864
[2025-12-18 02:57:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 07:11:40]  *** The last 200 lines of the pilot log: ***
[2025-12-18 07:11:40] 2025-12-18 06:10:21,208 | INFO     | time since job start (14958s) is within the limit (174528.0s)
[2025-12-18 07:11:40] 2025-12-18 06:10:23,216 | INFO     | time since job start (14960s) is within the limit (174528.0s)
[2025-12-18 07:11:40] 2025-12-18 06:10:23,679 | INFO     | monitor loop #1092: job 0:6931732864 is in state 'finished'
[2025-12-18 07:11:40] 2025-12-18 06:10:23,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 07:11:40] 2025-12-18 06:10:25,223 | INFO     | time since job start (14962s) is within the limit (174528.0s)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,186 | INFO     | monitor loop #1093: job 0:6931732864 is in state 'finished'
[2025-12-18 07:11:40] 2025-12-18 06:10:26,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,426 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 07:11:40] 2025-12-18 06:10:26,427 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-18 07:11:40] 2025-12-18 06:10:26,428 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6931732864/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,429 | INFO     | extracted standard info from prmon json
[2025-12-18 07:11:40] 2025-12-18 06:10:26,429 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 07:11:40] 2025-12-18 06:10:26,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 07:11:40] 2025-12-18 06:10:26,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 07:11:40] 2025-12-18 06:10:26,430 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 07:11:40] 2025-12-18 06:10:26,443 | INFO     | fitting pss+swap vs Time
[2025-12-18 07:11:40] 2025-12-18 06:10:26,444 | INFO     | sum of square deviations: 4127772278.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,446 | INFO     | sum of deviations: 46135386532.00003
[2025-12-18 07:11:40] 2025-12-18 06:10:26,446 | INFO     | mean x: 1766030917.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,446 | INFO     | mean y: 2444261.675105485
[2025-12-18 07:11:40] 2025-12-18 06:10:26,446 | INFO     | intersect: -19736173446.842163
[2025-12-18 07:11:40] 2025-12-18 06:10:26,447 | INFO     | chi2: 4.071386868169311
[2025-12-18 07:11:40] 2025-12-18 06:10:26,447 | INFO     | sum of square deviations: 3871990738.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,449 | INFO     | sum of deviations: 60631777434.49999
[2025-12-18 07:11:40] 2025-12-18 06:10:26,449 | INFO     | mean x: 1766030764.5
[2025-12-18 07:11:40] 2025-12-18 06:10:26,449 | INFO     | mean y: 2452745.9698275863
[2025-12-18 07:11:40] 2025-12-18 06:10:26,449 | INFO     | intersect: -27651948181.38174
[2025-12-18 07:11:40] 2025-12-18 06:10:26,449 | INFO     | chi2: 3.3190620712694607
[2025-12-18 07:11:40] 2025-12-18 06:10:26,450 | INFO     | current chi2=3.3190620712694607 (change=18.478342178230076 %)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,450 | INFO     | right removable region: 231
[2025-12-18 07:11:40] 2025-12-18 06:10:26,450 | INFO     | sum of square deviations: 3871990738.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,452 | INFO     | sum of deviations: -17764196221.5
[2025-12-18 07:11:40] 2025-12-18 06:10:26,452 | INFO     | mean x: 1766031069.5
[2025-12-18 07:11:40] 2025-12-18 06:10:26,452 | INFO     | mean y: 2482188.8060344825
[2025-12-18 07:11:40] 2025-12-18 06:10:26,452 | INFO     | intersect: 8104805922.170166
[2025-12-18 07:11:40] 2025-12-18 06:10:26,452 | INFO     | chi2: 0.8911021824360718
[2025-12-18 07:11:40] 2025-12-18 06:10:26,453 | INFO     | current chi2=0.8911021824360718 (change=78.1130555437304 %)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,453 | INFO     | sum of square deviations: 3627000098.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | sum of deviations: -27302320159.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | mean x: 1766031222.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | mean y: 2488096.3656387664
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | intersect: 13296325573.905735
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | chi2: 0.8068333963604135
[2025-12-18 07:11:40] 2025-12-18 06:10:26,455 | INFO     | current chi2=0.8068333963604135 (change=9.456691694468354 %)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,456 | INFO     | left removable region: 20
[2025-12-18 07:11:40] 2025-12-18 06:10:26,456 | INFO     | sum of square deviations: 2912836010.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,467 | INFO     | sum of deviations: -10720626719.000002
[2025-12-18 07:11:40] 2025-12-18 06:10:26,467 | INFO     | mean x: 1766031344.0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,467 | INFO     | mean y: 2497196.663507109
[2025-12-18 07:11:40] 2025-12-18 06:10:26,467 | INFO     | intersect: 6502335412.093246
[2025-12-18 07:11:40] 2025-12-18 06:10:26,467 | INFO     | chi2: 0.013495294713721441
[2025-12-18 07:11:40] 2025-12-18 06:10:26,468 | INFO     | current memory leak: -3.68 B/s (using 211 data points, chi2=0.01)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,468 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,468 | INFO     | ..............................
[2025-12-18 07:11:40] 2025-12-18 06:10:26,468 | INFO     | . Timing measurements:
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . get job = 0 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . initial setup = 3 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . payload setup = 125 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . stage-in = 0 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . payload execution = 14552 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . stage-out = 3 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | . log creation = 1 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,469 | INFO     | ..............................
[2025-12-18 07:11:40] 2025-12-18 06:10:26,701 | INFO     | 
[2025-12-18 07:11:40] 2025-12-18 06:10:26,701 | INFO     | job summary report
[2025-12-18 07:11:40] 2025-12-18 06:10:26,701 | INFO     | --------------------------------------------------
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | PanDA job id: 6931732864
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | task id: 47886831
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | errors: (none)
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | pilot state: finished 
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | transexitcode: 0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | exeerrorcode: 0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | exeerrordiag: 
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | exitcode: 0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | exitmsg: OK
[2025-12-18 07:11:40] 2025-12-18 06:10:26,702 | INFO     | cpuconsumptiontime: 53174 s
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | nevents: 400
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | neventsw: 0
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | pid: 2589
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | pgrp: 2589
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | corecount: 8
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | event service: False
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | sizes: {0: 2283766, 1: 2284021, 2: 2284021, 12: 2284049, 23: 2284077, 34: 2284105, 44: 2284261, 55: 2284289, 66: 2284317, 76: 2284345, 87: 2284401, 92: 2284971, 98
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | --------------------------------------------------
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | 
[2025-12-18 07:11:40] 2025-12-18 06:10:26,703 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 07:11:40] 2025-12-18 06:10:27,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 07:11:40] 2025-12-18 06:10:27,025 | INFO     | job 6931732864 has completed (purged errors)
[2025-12-18 07:11:40] 2025-12-18 06:10:27,025 | INFO     | overall cleanup function is called
[2025-12-18 07:11:40] 2025-12-18 06:10:28,034 | INFO     | --- collectZombieJob: --- 10, [2589]
[2025-12-18 07:11:40] 2025-12-18 06:10:28,034 | INFO     | zombie collector waiting for pid 2589
[2025-12-18 07:11:40] 2025-12-18 06:10:28,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 07:11:40] 2025-12-18 06:10:28,035 | INFO     | collected zombie processes
[2025-12-18 07:11:40] 2025-12-18 06:10:28,035 | INFO     | will attempt to kill all subprocesses of pid=2589
[2025-12-18 07:11:40] 2025-12-18 06:10:28,129 | INFO     | process IDs to be killed: [2589] (in reverse order)
[2025-12-18 07:11:40] 2025-12-18 06:10:28,828 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 07:11:40] 2025-12-18 06:10:28,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 07:11:40] 2025-12-18 06:10:28,831 | INFO     | did not find any defunct processes belonging to 2589
[2025-12-18 07:11:40] 2025-12-18 06:10:28,833 | INFO     | did not find any defunct processes belonging to 2589
[2025-12-18 07:11:40] 2025-12-18 06:10:28,833 | INFO     | ready for new job
[2025-12-18 07:11:40] 2025-12-18 06:10:28,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 07:11:40] 2025-12-18 06:10:28,836 | INFO     | ***************************************
[2025-12-18 07:11:40] 2025-12-18 06:10:28,836 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 07:11:40] 2025-12-18 06:10:28,836 | INFO     | ***************************************
[2025-12-18 07:11:40] 2025-12-18 06:10:28,836 | INFO     | 
[2025-12-18 07:11:40] 2025-12-18 06:10:28,836 | INFO     | pilot is running in a VM
[2025-12-18 07:11:40] 2025-12-18 06:10:28,837 | INFO     | architecture information:
[2025-12-18 07:11:40] 2025-12-18 06:10:28,837 | INFO     | executing command: cat /etc/os-release
[2025-12-18 07:11:40] 2025-12-18 06:10:28,977 | INFO     | cat /etc/os-release:
[2025-12-18 07:11:40] NAME="CentOS Linux"
[2025-12-18 07:11:40] VERSION="7 (Core)"
[2025-12-18 07:11:40] ID="centos"
[2025-12-18 07:11:40] ID_LIKE="rhel fedora"
[2025-12-18 07:11:40] VERSION_ID="7"
[2025-12-18 07:11:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 07:11:40] ANSI_COLOR="0;31"
[2025-12-18 07:11:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 07:11:40] HOME_URL="https://www.centos.org/"
[2025-12-18 07:11:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 07:11:40] 
[2025-12-18 07:11:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 07:11:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 07:11:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 07:11:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 07:11:40] 
[2025-12-18 07:11:40] 2025-12-18 06:10:28,978 | INFO     | ***************************************
[2025-12-18 07:11:40] 2025-12-18 06:10:29,481 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-18 07:11:40] 2025-12-18 06:10:29,623 | INFO     | sufficient remaining disk space (496351838208 B)
[2025-12-18 07:11:40] 2025-12-18 06:10:29,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 07:11:40] 2025-12-18 06:10:29,623 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 07:11:40] 2025-12-18 06:10:29,624 | INFO     | update_server=False
[2025-12-18 07:11:40] 2025-12-18 06:10:29,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 07:11:40] 2025-12-18 06:10:29,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 07:11:40] 2025-12-18 06:10:29,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 07:11:40] 2025-12-18 06:10:29,706 | INFO     | aborting loop
[2025-12-18 07:11:40] 2025-12-18 06:10:30,156 | INFO     | all job control threads have been joined
[2025-12-18 07:11:40] 2025-12-18 06:10:30,264 | INFO     | all data control threads have been joined
[2025-12-18 07:11:40] 2025-12-18 06:10:30,631 | INFO     | [job] retrieve thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:30,712 | INFO     | [job] job monitor thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:30,871 | INFO     | all payload control threads have been joined
[2025-12-18 07:11:40] 2025-12-18 06:10:31,013 | INFO     | [payload] failed_post thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,027 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,049 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,162 | INFO     | [job] control thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,271 | INFO     | [data] control thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 07:11:40] 2025-12-18 06:10:31,355 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 07:11:40] 2025-12-18 06:10:31,635 | INFO     | [data] copytool_out thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,685 | INFO     | [data] copytool_in thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,691 | INFO     | [job] validate thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,877 | INFO     | [payload] control thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:31,987 | INFO     | [payload] validate_post thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:32,635 | INFO     | [job] queue monitor thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:35,294 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:40,018 | INFO     | job.realtimelogging is not enabled
[2025-12-18 07:11:40] 2025-12-18 06:10:41,024 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 07:11:40] 2025-12-18 06:10:58,402 | INFO     | PID=28401 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-18 07:11:40] 2025-12-18 06:10:58,402 | INFO     | .. there are 9 such processes running
[2025-12-18 07:11:40] 2025-12-18 06:10:58,407 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 07:11:40] 2025-12-18 06:10:58,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 07:11:40] 2025-12-18 06:10:58,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 07:11:40] 2025-12-18 06:11:28,863 | INFO     | [monitor] cgroup control has ended
[2025-12-18 07:11:40] 2025-12-18 06:11:30,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064806496064)>', '<ExcThread(monitor, started 140064243836672)>']
[2025-12-18 07:11:40] 2025-12-18 06:11:31,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 07:11:40] 2025-12-18 06:11:31,603 | INFO     | [monitor] control thread has ended
[2025-12-18 07:11:40] 2025-12-18 06:11:35,726 | INFO     | all workflow threads have been joined
[2025-12-18 07:11:40] 2025-12-18 06:11:35,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 07:11:40] 2025-12-18 06:11:35,727 | INFO     | traces error code: 0
[2025-12-18 07:11:40] 2025-12-18 06:11:35,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 07:11:40] 2025-12-18 06:11:36,013 [wrapper] ==== pilot stdout END ====
[2025-12-18 07:11:40] 2025-12-18 06:11:36,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 07:11:40] 2025-12-18 06:11:36,124 [wrapper] pilotpid: 28401
[2025-12-18 07:11:40] 2025-12-18 06:11:36,215 [wrapper] Pilot exit status: 0
[2025-12-18 07:11:40] 2025-12-18 06:11:36,592 [wrapper] pandaids: 6931732864
[2025-12-18 07:11:40] 2025-12-18 06:11:37,583 [wrapper] cleanup supervisor_pilot 28364 28402
[2025-12-18 07:11:40] 2025-12-18 06:11:37,687 [wrapper] Test setup, not cleaning
[2025-12-18 07:11:40] 2025-12-18 06:11:37,764 [wrapper] apfmon messages muted
[2025-12-18 07:11:40] 2025-12-18 06:11:37,801 [wrapper] ==== wrapper stdout END ====
[2025-12-18 07:11:40] 2025-12-18 06:11:37,841 [wrapper] ==== wrapper stderr END ====
[2025-12-18 07:11:40]  *** Error codes and diagnostics ***
[2025-12-18 07:11:40]     "exeErrorCode": 0,
[2025-12-18 07:11:40]     "exeErrorDiag": "",
[2025-12-18 07:11:40]     "pilotErrorCode": 0,
[2025-12-18 07:11:40]     "pilotErrorDiag": "",
[2025-12-18 07:11:40]  *** Listing of results directory ***
[2025-12-18 07:11:40] total 337764
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc    579449 Dec 16 23:36 pilot3.tar.gz
[2025-12-18 07:11:40] -rwx------. 1 boinc boinc     36322 Dec 16 23:37 runpilot2-wrapper.sh
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc      5112 Dec 16 23:38 queuedata.json
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc       100 Dec 18 02:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 07:11:40] -rwxr-xr-x. 1 boinc boinc      7986 Dec 18 02:57 run_atlas
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc       105 Dec 18 02:57 job.xml
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc      6392 Dec 18 02:57 init_data.xml
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc 192767659 Dec 18 02:57 EVNT.47886829._000623.pool.root.1
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc     15847 Dec 18 02:57 start_atlas.sh
[2025-12-18 07:11:40] drwxrwx--x. 2 boinc boinc        68 Dec 18 02:57 shared
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc    592411 Dec 18 02:57 input.tar.gz
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc         0 Dec 18 02:57 boinc_lockfile
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc      2539 Dec 18 02:57 pandaJob.out
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc    988102 Dec 18 03:01 agis_schedconf.cvmfs.json
[2025-12-18 07:11:40] drwx------. 5 boinc boinc      4096 Dec 18 03:01 pilot3
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc 144268862 Dec 18 07:07 HITS.47886831._016084.pool.root.1
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc       531 Dec 18 07:08 boinc_task_state.xml
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc      1019 Dec 18 07:08 memory_monitor_summary.json
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc   1516240 Dec 18 07:08 agis_ddmendpoints.agis.ALL.json
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc    460118 Dec 18 07:08 log.47886831._016084.job.log.tgz.1
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc      7786 Dec 18 07:10 heartbeat.json
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc        95 Dec 18 07:10 pilot_heartbeat.json
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc      8192 Dec 18 07:11 boinc_mmap_file
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc        28 Dec 18 07:11 wrapper_checkpoint.txt
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc      4956 Dec 18 07:11 pilotlog.txt
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc   2003982 Dec 18 07:11 log.47886831._016084.job.log.1
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc       357 Dec 18 07:11 output.list
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc       620 Dec 18 07:11 runtime_log
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc   2488320 Dec 18 07:11 result.tar.gz
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc      8817 Dec 18 07:11 runtime_log.err
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc       657 Dec 18 07:11 ha4LDmuqsp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaMWKDmJGz6Wo.diag
[2025-12-18 07:11:40] -rw-r--r--. 1 boinc boinc     20963 Dec 18 07:11 stderr.txt
[2025-12-18 07:11:40] HITS file was successfully produced:
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc 144268862 Dec 18 07:07 shared/HITS.pool.root.1
[2025-12-18 07:11:40]  *** Contents of shared directory: ***
[2025-12-18 07:11:40] total 332168
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc 192767659 Dec 18 02:57 ATLAS.root_0
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc     15847 Dec 18 02:57 start_atlas.sh
[2025-12-18 07:11:40] -rw-r--r--. 2 boinc boinc    592411 Dec 18 02:57 input.tar.gz
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc 144268862 Dec 18 07:07 HITS.pool.root.1
[2025-12-18 07:11:40] -rw-------. 1 boinc boinc   2488320 Dec 18 07:11 result.tar.gz
07:11:42 (24562): run_atlas exited; CPU time 53365.888384
07:11:42 (24562): called boinc_finish(0)

</stderr_txt>
]]>

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