Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:00:26 (3112866): wrapper (7.7.26015): starting
14:00:26 (3112866): wrapper: running run_atlas (--nthreads 8)
[2025-12-17 14:00:26] Arguments: --nthreads 8
[2025-12-17 14:00:26] Threads: 8
[2025-12-17 14:00:26] Checking for CVMFS
[2025-12-17 14:00:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 14:00:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 14:00:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 14:00:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 14:00:27] 2.13.2.0 6914 66472 256420 154119 1 1076 25720547 40960001 21315 16776704 0 282446455 99.558 347264334 38116 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 14:00:27] CVMFS is ok
[2025-12-17 14:00:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 14:00:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 14:00:27] Further information can be found at the LHC@home message board.
[2025-12-17 14:00:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 14:00:27] Checking for apptainer binary...
[2025-12-17 14:00:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 14:00:27] Running /usr/bin/apptainer --version
[2025-12-17 14:00:27] apptainer version 1.4.5-2.el9
[2025-12-17 14:00:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 14:00:27] c-212-1.aglt2.org
[2025-12-17 14:00:27] apptainer works
[2025-12-17 14:00:27] Set ATHENA_PROC_NUMBER=8
[2025-12-17 14:00:27] Set ATHENA_CORE_NUMBER=8
[2025-12-17 14:00:27] Starting ATLAS job with PandaID=6931735355
[2025-12-17 14:00:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 15:41:55]  *** The last 200 lines of the pilot log: ***
[2025-12-17 15:41:55] 2025-12-17 20:40:41,419 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931735355/log.47886933._008145.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._008145.job
[2025-12-17 15:41:55] 2025-12-17 20:40:41,539 | INFO     | adding to output.list: log.47886933._008145.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/af/log.47886933._008145.job.log.tg
[2025-12-17 15:41:55] 2025-12-17 20:40:41,540 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 15:41:55] 2025-12-17 20:40:41,540 | INFO     | summary of transferred files:
[2025-12-17 15:41:55] 2025-12-17 20:40:41,540 | INFO     |  -- lfn=log.47886933._008145.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 15:41:55] 2025-12-17 20:40:41,541 | INFO     | stage-out finished correctly
[2025-12-17 15:41:55] 2025-12-17 20:40:41,608 | INFO     | time since job start (6003s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:41,936 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 15:41:55] 2025-12-17 20:40:43,615 | INFO     | time since job start (6005s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:44,640 | INFO     | job 6931735355 has state=finished
[2025-12-17 15:41:55] 2025-12-17 20:40:44,640 | INFO     | preparing for final server update for job 6931735355 in state='finished'
[2025-12-17 15:41:55] 2025-12-17 20:40:44,720 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-17 15:41:55] 2025-12-17 20:40:44,720 | INFO     | this job has now completed (state=finished)
[2025-12-17 15:41:55] 2025-12-17 20:40:44,720 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 15:41:55] 2025-12-17 20:40:44,720 | INFO     | log transfer has been attempted: DONE
[2025-12-17 15:41:55] 2025-12-17 20:40:44,720 | INFO     | job 6931735355 has finished - writing final server update
[2025-12-17 15:41:55] 2025-12-17 20:40:44,721 | INFO     | total number of processed events: 400 (read)
[2025-12-17 15:41:55] 2025-12-17 20:40:44,730 | INFO     | executing command: lscpu
[2025-12-17 15:41:55] 2025-12-17 20:40:44,879 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 15:41:55] 2025-12-17 20:40:45,622 | INFO     | time since job start (6007s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:47,628 | INFO     | time since job start (6009s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:48,755 | WARNING  | process 3123272 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 15:41:55] 2025-12-17 20:40:48,756 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931735355/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:41:55] 2025-12-17 20:40:49,586 | INFO     | PID=3116608 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 15:41:55] 2025-12-17 20:40:49,586 | INFO     | .. there are 23 such processes running
[2025-12-17 15:41:55] 2025-12-17 20:40:49,621 | INFO     | number of running child processes to parent process 3123272: 1
[2025-12-17 15:41:55] 2025-12-17 20:40:49,622 | INFO     | maximum number of monitored processes: 6
[2025-12-17 15:41:55] 2025-12-17 20:40:50,590 | INFO     | time since job start (6012s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:52,127 | INFO     | monitor loop #411: job 0:6931735355 is in state 'finished'
[2025-12-17 15:41:55] 2025-12-17 20:40:52,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:41:55] 2025-12-17 20:40:52,598 | INFO     | time since job start (6014s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:54,605 | INFO     | time since job start (6016s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:54,631 | INFO     | monitor loop #412: job 0:6931735355 is in state 'finished'
[2025-12-17 15:41:55] 2025-12-17 20:40:54,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:41:55] 2025-12-17 20:40:56,613 | INFO     | time since job start (6018s) is within the limit (174528.0s)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,078 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 15:41:55] 2025-12-17 20:40:57,094 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3134.4938958333328
[2025-12-17 15:41:55] 2025-12-17 20:40:57,154 | INFO     | monitor loop #413: job 0:6931735355 is in state 'finished'
[2025-12-17 15:41:55] 2025-12-17 20:40:57,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,193 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931735355/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,193 | INFO     | extracted standard info from prmon json
[2025-12-17 15:41:55] 2025-12-17 20:40:57,193 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 15:41:55] 2025-12-17 20:40:57,193 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 15:41:55] 2025-12-17 20:40:57,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 15:41:55] 2025-12-17 20:40:57,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 15:41:55] 2025-12-17 20:40:57,195 | INFO     | fitting pss+swap vs Time
[2025-12-17 15:41:55] 2025-12-17 20:40:57,195 | INFO     | sum of square deviations: 233641590.0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | sum of deviations: 1095760751.0000002
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | mean x: 1766001115.0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | mean y: 2489341.4725274723
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | intersect: -8279917519.56295
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | chi2: 0.00031894403305324063
[2025-12-17 15:41:55] 2025-12-17 20:40:57,196 | INFO     | current memory leak: 4.69 B/s (using 91 data points, chi2=0.00)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | could have reported an average CPU frequency of 3143 MHz (7 samples)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | ..............................
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . Timing measurements:
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . get job = 0 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . initial setup = 2 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . payload setup = 5 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . stage-in = 0 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . payload execution = 5978 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . stage-out = 1 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | . log creation = 0 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,217 | INFO     | ..............................
[2025-12-17 15:41:55] 2025-12-17 20:40:57,517 | INFO     | 
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | job summary report
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | --------------------------------------------------
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | PanDA job id: 6931735355
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | task id: 47886933
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | errors: (none)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | pilot state: finished 
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | transexitcode: 0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | exeerrorcode: 0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | exeerrordiag: 
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | exitcode: 0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | exitmsg: OK
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | cpuconsumptiontime: 33012 s
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | nevents: 400
[2025-12-17 15:41:55] 2025-12-17 20:40:57,518 | INFO     | neventsw: 0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | pid: 3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | pgrp: 3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | corecount: 8
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | event service: False
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | sizes: {0: 2283965, 5: 2284227, 11: 2284283, 5985: 2311365, 5986: 2311364, 5988: 2320602, 6003: 2320740}
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | --------------------------------------------------
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | 
[2025-12-17 15:41:55] 2025-12-17 20:40:57,519 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,594 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 15:41:55] 2025-12-17 20:40:57,594 | INFO     | job 6931735355 has completed (purged errors)
[2025-12-17 15:41:55] 2025-12-17 20:40:57,594 | INFO     | overall cleanup function is called
[2025-12-17 15:41:55] 2025-12-17 20:40:58,640 | INFO     | --- collectZombieJob: --- 10, [3123272]
[2025-12-17 15:41:55] 2025-12-17 20:40:58,641 | INFO     | zombie collector waiting for pid 3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:58,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 15:41:55] 2025-12-17 20:40:58,641 | INFO     | collected zombie processes
[2025-12-17 15:41:55] 2025-12-17 20:40:58,641 | INFO     | will attempt to kill all subprocesses of pid=3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:59,228 | INFO     | process IDs to be killed: [3123272] (in reverse order)
[2025-12-17 15:41:55] 2025-12-17 20:40:59,399 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 15:41:55] 2025-12-17 20:40:59,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 15:41:55] 2025-12-17 20:40:59,415 | INFO     | did not find any defunct processes belonging to 3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:59,430 | INFO     | did not find any defunct processes belonging to 3123272
[2025-12-17 15:41:55] 2025-12-17 20:40:59,431 | INFO     | ready for new job
[2025-12-17 15:41:55] 2025-12-17 20:40:59,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 15:41:55] 2025-12-17 20:40:59,434 | INFO     | ***************************************
[2025-12-17 15:41:55] 2025-12-17 20:40:59,434 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 15:41:55] 2025-12-17 20:40:59,434 | INFO     | ***************************************
[2025-12-17 15:41:55] 2025-12-17 20:40:59,434 | INFO     | 
[2025-12-17 15:41:55] 2025-12-17 20:40:59,461 | INFO     | architecture information:
[2025-12-17 15:41:55] 2025-12-17 20:40:59,462 | INFO     | executing command: cat /etc/os-release
[2025-12-17 15:41:55] 2025-12-17 20:40:59,517 | INFO     | cat /etc/os-release:
[2025-12-17 15:41:55] NAME="CentOS Linux"
[2025-12-17 15:41:55] VERSION="7 (Core)"
[2025-12-17 15:41:55] ID="centos"
[2025-12-17 15:41:55] ID_LIKE="rhel fedora"
[2025-12-17 15:41:55] VERSION_ID="7"
[2025-12-17 15:41:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 15:41:55] ANSI_COLOR="0;31"
[2025-12-17 15:41:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 15:41:55] HOME_URL="https://www.centos.org/"
[2025-12-17 15:41:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 15:41:55] 
[2025-12-17 15:41:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 15:41:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 15:41:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 15:41:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 15:41:55] 
[2025-12-17 15:41:55] 2025-12-17 20:40:59,517 | INFO     | ***************************************
[2025-12-17 15:41:55] 2025-12-17 20:41:00,021 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-17 15:41:55] 2025-12-17 20:41:00,140 | INFO     | sufficient remaining disk space (127442878464 B)
[2025-12-17 15:41:55] 2025-12-17 20:41:00,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 15:41:55] 2025-12-17 20:41:00,140 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 15:41:55] 2025-12-17 20:41:00,140 | INFO     | update_server=False
[2025-12-17 15:41:55] 2025-12-17 20:41:00,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 15:41:55] 2025-12-17 20:41:00,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 15:41:55] 2025-12-17 20:41:00,569 | INFO     | all data control threads have been joined
[2025-12-17 15:41:55] 2025-12-17 20:41:00,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:41:55] 2025-12-17 20:41:00,686 | INFO     | aborting loop
[2025-12-17 15:41:55] 2025-12-17 20:41:01,107 | INFO     | all job control threads have been joined
[2025-12-17 15:41:55] 2025-12-17 20:41:01,146 | INFO     | [job] retrieve thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,196 | INFO     | [data] copytool_in thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,361 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,414 | INFO     | all payload control threads have been joined
[2025-12-17 15:41:55] 2025-12-17 20:41:01,576 | INFO     | [data] control thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,627 | INFO     | [payload] validate_post thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 15:41:55] 2025-12-17 20:41:01,706 | INFO     | [job] job monitor thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:01,715 | INFO     | [payload] failed_post thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,114 | INFO     | [job] control thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,149 | INFO     | [data] copytool_out thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,246 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,308 | INFO     | [job] validate thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,421 | INFO     | [payload] control thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,482 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:02,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:41:55] 2025-12-17 20:41:03,564 | INFO     | [job] queue monitor thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:05,682 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:10,349 | INFO     | job.realtimelogging is not enabled
[2025-12-17 15:41:55] 2025-12-17 20:41:11,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 15:41:55] 2025-12-17 20:41:30,306 | INFO     | PID=3116608 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 15:41:55] 2025-12-17 20:41:30,306 | INFO     | .. there are 23 such processes running
[2025-12-17 15:41:55] 2025-12-17 20:41:30,307 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 15:41:55] 2025-12-17 20:41:30,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 15:41:55] 2025-12-17 20:41:30,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 15:41:55] 2025-12-17 20:41:48,639 | INFO     | [monitor] cgroup control has ended
[2025-12-17 15:41:55] 2025-12-17 20:41:49,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022034245440)>', '<ExcThread(monitor, started 140021520635648)>']
[2025-12-17 15:41:55] 2025-12-17 20:41:50,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 15:41:55] 2025-12-17 20:41:50,431 | INFO     | [monitor] control thread has ended
[2025-12-17 15:41:55] 2025-12-17 20:41:54,893 | INFO     | all workflow threads have been joined
[2025-12-17 15:41:55] 2025-12-17 20:41:54,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 15:41:55] 2025-12-17 20:41:54,898 | INFO     | traces error code: 0
[2025-12-17 15:41:55] 2025-12-17 20:41:54,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 15:41:55] 2025-12-17 20:41:55,086 [wrapper] ==== pilot stdout END ====
[2025-12-17 15:41:55] 2025-12-17 20:41:55,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 15:41:55] 2025-12-17 20:41:55,128 [wrapper] pilotpid: 3116608
[2025-12-17 15:41:55] 2025-12-17 20:41:55,141 [wrapper] Pilot exit status: 0
[2025-12-17 15:41:55] 2025-12-17 20:41:55,189 [wrapper] pandaids: 6931735355
[2025-12-17 15:41:55] 2025-12-17 20:41:55,355 [wrapper] cleanup supervisor_pilot 3510867 3116609
[2025-12-17 15:41:55] 2025-12-17 20:41:55,360 [wrapper] Test setup, not cleaning
[2025-12-17 15:41:55] 2025-12-17 20:41:55,371 [wrapper] apfmon messages muted
[2025-12-17 15:41:55] 2025-12-17 20:41:55,384 [wrapper] ==== wrapper stdout END ====
[2025-12-17 15:41:55] 2025-12-17 20:41:55,412 [wrapper] ==== wrapper stderr END ====
[2025-12-17 15:41:55]  *** Error codes and diagnostics ***
[2025-12-17 15:41:55]     "exeErrorCode": 0,
[2025-12-17 15:41:55]     "exeErrorDiag": "",
[2025-12-17 15:41:55]     "pilotErrorCode": 0,
[2025-12-17 15:41:55]     "pilotErrorDiag": "",
[2025-12-17 15:41:55]  *** Listing of results directory ***
[2025-12-17 15:41:55] total 342868
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 20:05 pilot3.tar.gz
[2025-12-17 15:41:55] -rwx------. 1 boincer umatlas     36322 Dec 16 20:06 runpilot2-wrapper.sh
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 20:07 queuedata.json
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas       100 Dec 17 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 15:41:55] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 17 14:00 run_atlas
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas       105 Dec 17 14:00 job.xml
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas 191413084 Dec 17 14:00 EVNT.47886929._000333.pool.root.1
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 14:00 start_atlas.sh
[2025-12-17 15:41:55] drwxrwx--x. 2 boincer umatlas      4096 Dec 17 14:00 shared
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas    592399 Dec 17 14:00 input.tar.gz
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas         0 Dec 17 14:00 boinc_lockfile
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas      2513 Dec 17 14:00 pandaJob.out
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas        57 Dec 17 14:00 setup.sh.local
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas    988136 Dec 17 14:00 agis_schedconf.cvmfs.json
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas   1516240 Dec 17 14:00 agis_ddmendpoints.agis.ALL.json
[2025-12-17 15:41:55] drwx------. 5 boincer umatlas      4096 Dec 17 14:00 pilot3
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas      6947 Dec 17 15:40 init_data.xml
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas 153389188 Dec 17 15:40 HITS.47886933._008145.pool.root.1
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas       529 Dec 17 15:40 boinc_task_state.xml
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas      1046 Dec 17 15:40 memory_monitor_summary.json
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas    336765 Dec 17 15:40 log.47886933._008145.job.log.tgz.1
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas      7785 Dec 17 15:40 heartbeat.json
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas        95 Dec 17 15:41 pilot_heartbeat.json
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas      8192 Dec 17 15:41 boinc_mmap_file
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas        27 Dec 17 15:41 wrapper_checkpoint.txt
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas      4897 Dec 17 15:41 pilotlog.txt
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas    848457 Dec 17 15:41 log.47886933._008145.job.log.1
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas       357 Dec 17 15:41 output.list
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas       620 Dec 17 15:41 runtime_log
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas   1208320 Dec 17 15:41 result.tar.gz
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas      9337 Dec 17 15:41 runtime_log.err
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas       654 Dec 17 15:41 5lkKDmFBvp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz3aKDmk8UsOm.diag
[2025-12-17 15:41:55] -rw-r--r--. 1 boincer umatlas     22493 Dec 17 15:41 stderr.txt
[2025-12-17 15:41:55] HITS file was successfully produced:
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas 153389188 Dec 17 15:40 shared/HITS.pool.root.1
[2025-12-17 15:41:55]  *** Contents of shared directory: ***
[2025-12-17 15:41:55] total 338508
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas 191413084 Dec 17 14:00 ATLAS.root_0
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 14:00 start_atlas.sh
[2025-12-17 15:41:55] -rw-r--r--. 2 boincer umatlas    592399 Dec 17 14:00 input.tar.gz
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas 153389188 Dec 17 15:40 HITS.pool.root.1
[2025-12-17 15:41:55] -rw-------. 1 boincer umatlas   1208320 Dec 17 15:41 result.tar.gz
15:41:56 (3112866): run_atlas exited; CPU time 33183.516888
15:41:56 (3112866): called boinc_finish(0)

</stderr_txt>
]]>

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