Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:37:34 (2207979): wrapper (7.7.26015): starting
20:37:34 (2207979): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 20:37:34] Arguments: --nthreads 12
[2025-12-17 20:37:34] Threads: 12
[2025-12-17 20:37:34] Checking for CVMFS
[2025-12-17 20:37:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 20:37:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 20:37:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 20:37:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 20:37:35] 2.11.0.0 1971323 3865 102988 154122 2 188 3823352 6144001 11864 130560 0 49630896 99.999 142376 184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-17 20:37:35] CVMFS is ok
[2025-12-17 20:37:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 20:37:35] Checking for apptainer binary...
[2025-12-17 20:37:35] apptainer is not installed, using version from CVMFS
[2025-12-17 20:37:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 20:37:35] radiat0r
[2025-12-17 20:37:35] apptainer works
[2025-12-17 20:37:35] Set ATHENA_PROC_NUMBER=12
[2025-12-17 20:37:35] Set ATHENA_CORE_NUMBER=12
[2025-12-17 20:37:35] Starting ATLAS job with PandaID=6930649940
[2025-12-17 20:37:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 21:43:19]  *** The last 200 lines of the pilot log: ***
[2025-12-17 21:43:19]  replicas=None
[2025-12-17 21:43:19]  scope=mc23_13p6TeV
[2025-12-17 21:43:19]  status=None
[2025-12-17 21:43:19]  status_code=0
[2025-12-17 21:43:19]  storage_token=
[2025-12-17 21:43:19]  surl=/var/lib/boinc/slots/13/PanDA_Pilot-6930649940/log.47898836._003370.job.log.tgz.1
[2025-12-17 21:43:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/99/log.47898836._003370.job.log.tgz.1
[2025-12-17 21:43:19]  workdir=None
[2025-12-17 21:43:19] ]
[2025-12-17 21:43:19] 2025-12-17 21:42:37,519 | INFO     | transferring file log.47898836._003370.job.log.tgz.1 from /var/lib/boinc/slots/13/PanDA_Pilot-6930649940/log.47898836._003370.job.log.tgz.1 to /var/lib/boinc/slots
[2025-12-17 21:43:19] 2025-12-17 21:42:37,519 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/13/PanDA_Pilot-6930649940/log.47898836._003370.job.log.tgz.1 /var/lib/boinc/slots/13/log.47898836._003370.j
[2025-12-17 21:43:19] 2025-12-17 21:42:37,547 | INFO     | adding to output.list: log.47898836._003370.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/99/log.47898836._003370.job.log.tg
[2025-12-17 21:43:19] 2025-12-17 21:42:37,549 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 21:43:19] 2025-12-17 21:42:37,549 | INFO     | summary of transferred files:
[2025-12-17 21:43:19] 2025-12-17 21:42:37,549 | INFO     |  -- lfn=log.47898836._003370.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 21:43:19] 2025-12-17 21:42:37,549 | INFO     | stage-out finished correctly
[2025-12-17 21:43:19] 2025-12-17 21:42:38,634 | INFO     | monitor loop #271: job 0:6930649940 is in state 'finished'
[2025-12-17 21:43:19] 2025-12-17 21:42:38,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 21:43:19] 2025-12-17 21:42:39,015 | INFO     | time since job start (3888s) is within the limit (174528.0s)
[2025-12-17 21:43:19] 2025-12-17 21:42:39,437 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 21:43:19] 2025-12-17 21:42:39,533 | INFO     | job 6930649940 has state=finished
[2025-12-17 21:43:19] 2025-12-17 21:42:39,534 | INFO     | preparing for final server update for job 6930649940 in state='finished'
[2025-12-17 21:43:19] 2025-12-17 21:42:39,534 | INFO     | this job has now completed (state=finished)
[2025-12-17 21:43:19] 2025-12-17 21:42:39,534 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 21:43:19] 2025-12-17 21:42:39,534 | INFO     | log transfer has been attempted: DONE
[2025-12-17 21:43:19] 2025-12-17 21:42:39,535 | INFO     | job 6930649940 has finished - writing final server update
[2025-12-17 21:43:19] 2025-12-17 21:42:39,535 | INFO     | total number of processed events: 400 (read)
[2025-12-17 21:43:19] 2025-12-17 21:42:39,537 | INFO     | executing command: lscpu
[2025-12-17 21:43:19] 2025-12-17 21:42:39,735 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 21:43:19] 2025-12-17 21:42:41,021 | INFO     | time since job start (3890s) is within the limit (174528.0s)
[2025-12-17 21:43:19] 2025-12-17 21:42:41,138 | INFO     | monitor loop #272: job 0:6930649940 is in state 'finished'
[2025-12-17 21:43:19] 2025-12-17 21:42:41,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 21:43:19] 2025-12-17 21:42:43,027 | INFO     | time since job start (3892s) is within the limit (174528.0s)
[2025-12-17 21:43:19] 2025-12-17 21:42:43,641 | INFO     | monitor loop #273: job 0:6930649940 is in state 'finished'
[2025-12-17 21:43:19] 2025-12-17 21:42:43,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 21:43:19] 2025-12-17 21:42:45,033 | INFO     | time since job start (3894s) is within the limit (174528.0s)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,145 | INFO     | monitor loop #274: job 0:6930649940 is in state 'finished'
[2025-12-17 21:43:19] 2025-12-17 21:42:46,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,350 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 21:43:19] 2025-12-17 21:42:46,412 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2417.5635664062506
[2025-12-17 21:43:19] 2025-12-17 21:42:46,483 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6930649940/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,484 | INFO     | extracted standard info from prmon json
[2025-12-17 21:43:19] 2025-12-17 21:42:46,485 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 21:43:19] 2025-12-17 21:42:46,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 21:43:19] 2025-12-17 21:42:46,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 21:43:19] 2025-12-17 21:42:46,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 21:43:19] 2025-12-17 21:42:46,487 | INFO     | fitting pss+swap vs Time
[2025-12-17 21:43:19] 2025-12-17 21:42:46,487 | INFO     | sum of square deviations: 57407588.0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | sum of deviations: -269191475.00000006
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | mean x: 1766005916.0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | mean y: 2670959.245614035
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | intersect: 8283697108.380571
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | chi2: 0.001484022271421769
[2025-12-17 21:43:19] 2025-12-17 21:42:46,488 | INFO     | current memory leak: -4.69 B/s (using 57 data points, chi2=0.00)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | could have reported an average CPU frequency of 2372 MHz (6 samples)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | ..............................
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . Timing measurements:
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . get job = 0 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . initial setup = 3 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . payload setup = 7 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . stage-in = 0 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . payload execution = 3856 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,489 | INFO     | . stage-out = 0 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,490 | INFO     | . log creation = 0 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,490 | INFO     | ..............................
[2025-12-17 21:43:19] 2025-12-17 21:42:46,593 | INFO     | 
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | job summary report
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | --------------------------------------------------
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | PanDA job id: 6930649940
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | task id: 47898836
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | errors: (none)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | pilot state: finished 
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | transexitcode: 0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,594 | INFO     | exeerrorcode: 0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | exeerrordiag: 
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | exitcode: 0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | exitmsg: OK
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | cpuconsumptiontime: 42315 s
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | nevents: 400
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | neventsw: 0
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | pid: 2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | pgrp: 2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | corecount: 12
[2025-12-17 21:43:19] 2025-12-17 21:42:46,595 | INFO     | event service: False
[2025-12-17 21:43:19] 2025-12-17 21:42:46,596 | INFO     | sizes: {0: 2284011, 7: 2284273, 11: 2284301, 3868: 2310205, 3869: 2319205, 3871: 2319261, 3878: 2319583}
[2025-12-17 21:43:19] 2025-12-17 21:42:46,596 | INFO     | --------------------------------------------------
[2025-12-17 21:43:19] 2025-12-17 21:42:46,596 | INFO     | 
[2025-12-17 21:43:19] 2025-12-17 21:42:46,596 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | job 6930649940 has completed (purged errors)
[2025-12-17 21:43:19] 2025-12-17 21:42:46,631 | INFO     | overall cleanup function is called
[2025-12-17 21:43:19] 2025-12-17 21:42:47,641 | INFO     | --- collectZombieJob: --- 10, [2230449]
[2025-12-17 21:43:19] 2025-12-17 21:42:47,642 | INFO     | zombie collector waiting for pid 2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:47,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 21:43:19] 2025-12-17 21:42:47,642 | INFO     | collected zombie processes
[2025-12-17 21:43:19] 2025-12-17 21:42:47,642 | INFO     | will attempt to kill all subprocesses of pid=2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:48,326 | INFO     | process IDs to be killed: [2230449] (in reverse order)
[2025-12-17 21:43:19] 2025-12-17 21:42:48,586 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 21:43:19] 2025-12-17 21:42:48,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 21:43:19] 2025-12-17 21:42:48,613 | INFO     | did not find any defunct processes belonging to 2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:48,637 | INFO     | did not find any defunct processes belonging to 2230449
[2025-12-17 21:43:19] 2025-12-17 21:42:48,638 | INFO     | ready for new job
[2025-12-17 21:43:19] 2025-12-17 21:42:48,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 21:43:19] 2025-12-17 21:42:48,640 | INFO     | ***************************************
[2025-12-17 21:43:19] 2025-12-17 21:42:48,641 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 21:43:19] 2025-12-17 21:42:48,641 | INFO     | ***************************************
[2025-12-17 21:43:19] 2025-12-17 21:42:48,641 | INFO     | 
[2025-12-17 21:43:19] 2025-12-17 21:42:48,680 | INFO     | architecture information:
[2025-12-17 21:43:19] 2025-12-17 21:42:48,681 | INFO     | executing command: cat /etc/os-release
[2025-12-17 21:43:19] 2025-12-17 21:42:48,706 | INFO     | cat /etc/os-release:
[2025-12-17 21:43:19] NAME="CentOS Linux"
[2025-12-17 21:43:19] VERSION="7 (Core)"
[2025-12-17 21:43:19] ID="centos"
[2025-12-17 21:43:19] ID_LIKE="rhel fedora"
[2025-12-17 21:43:19] VERSION_ID="7"
[2025-12-17 21:43:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 21:43:19] ANSI_COLOR="0;31"
[2025-12-17 21:43:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 21:43:19] HOME_URL="https://www.centos.org/"
[2025-12-17 21:43:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 21:43:19] 
[2025-12-17 21:43:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 21:43:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 21:43:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 21:43:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 21:43:19] 
[2025-12-17 21:43:19] 2025-12-17 21:42:48,706 | INFO     | ***************************************
[2025-12-17 21:43:19] 2025-12-17 21:42:49,210 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-12-17 21:43:19] 2025-12-17 21:42:49,247 | INFO     | sufficient remaining disk space (1702865403904 B)
[2025-12-17 21:43:19] 2025-12-17 21:42:49,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 21:43:19] 2025-12-17 21:42:49,247 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 21:43:19] 2025-12-17 21:42:49,248 | INFO     | update_server=False
[2025-12-17 21:43:19] 2025-12-17 21:42:49,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 21:43:19] 2025-12-17 21:42:49,581 | INFO     | all payload control threads have been joined
[2025-12-17 21:43:19] 2025-12-17 21:42:49,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 21:43:19] 2025-12-17 21:42:49,654 | INFO     | aborting loop
[2025-12-17 21:43:19] 2025-12-17 21:42:49,720 | INFO     | all data control threads have been joined
[2025-12-17 21:43:19] 2025-12-17 21:42:50,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 21:43:19] 2025-12-17 21:42:50,251 | INFO     | [job] retrieve thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,332 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,406 | INFO     | all job control threads have been joined
[2025-12-17 21:43:19] 2025-12-17 21:42:50,453 | INFO     | [payload] failed_post thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,586 | INFO     | [payload] control thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,660 | INFO     | [job] job monitor thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 21:43:19] 2025-12-17 21:42:50,720 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,723 | INFO     | [data] control thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:50,831 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:51,412 | INFO     | [job] control thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:51,463 | INFO     | [data] copytool_in thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:51,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:51,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 21:43:19] 2025-12-17 21:42:51,702 | INFO     | [job] validate thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:51,840 | INFO     | [payload] validate_post thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:52,607 | INFO     | [job] queue monitor thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:52,671 | INFO     | [data] copytool_out thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:54,051 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 21:43:19] 2025-12-17 21:42:56,825 | INFO     | [monitor] cgroup control has ended
[2025-12-17 21:43:19] 2025-12-17 21:42:57,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804249204544)>', '<ExcThread(monitor, started 139803567830784)>']
[2025-12-17 21:43:19] 2025-12-17 21:43:02,061 | INFO     | all workflow threads have been joined
[2025-12-17 21:43:19] 2025-12-17 21:43:02,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 21:43:19] 2025-12-17 21:43:02,061 | INFO     | traces error code: 0
[2025-12-17 21:43:19] 2025-12-17 21:43:02,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 21:43:19] 2025-12-17 21:43:19,048 | INFO     | PID=2222042 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 21:43:19] 2025-12-17 21:43:19,048 | INFO     | .. there are 14 such processes running
[2025-12-17 21:43:19] 2025-12-17 21:43:19,050 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 21:43:19] 2025-12-17 21:43:19,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 21:43:19] 2025-12-17 21:43:19,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 21:43:19] 2025-12-17 21:43:19,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 21:43:19] 2025-12-17 21:43:19,050 | INFO     | [monitor] control thread has ended
[2025-12-17 21:43:19] 2025-12-17 21:43:19,240 [wrapper] ==== pilot stdout END ====
[2025-12-17 21:43:19] 2025-12-17 21:43:19,246 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 21:43:19] 2025-12-17 21:43:19,250 [wrapper] pilotpid: 2222042
[2025-12-17 21:43:19] 2025-12-17 21:43:19,253 [wrapper] Pilot exit status: 0
[2025-12-17 21:43:19] 2025-12-17 21:43:19,267 [wrapper] pandaids: 6930649940
[2025-12-17 21:43:19] 2025-12-17 21:43:19,448 [wrapper] cleanup supervisor_pilot 2620804 2222043
[2025-12-17 21:43:19] 2025-12-17 21:43:19,452 [wrapper] Test setup, not cleaning
[2025-12-17 21:43:19] 2025-12-17 21:43:19,457 [wrapper] apfmon messages muted
[2025-12-17 21:43:19] 2025-12-17 21:43:19,461 [wrapper] ==== wrapper stdout END ====
[2025-12-17 21:43:19] 2025-12-17 21:43:19,464 [wrapper] ==== wrapper stderr END ====
[2025-12-17 21:43:19]  *** Error codes and diagnostics ***
[2025-12-17 21:43:19]     "exeErrorCode": 0,
[2025-12-17 21:43:19]     "exeErrorDiag": "",
[2025-12-17 21:43:19]     "pilotErrorCode": 0,
[2025-12-17 21:43:19]     "pilotErrorDiag": "",
[2025-12-17 21:43:19]  *** Listing of results directory ***
[2025-12-17 21:43:19] total 413248
[2025-12-17 21:43:19] -rwx------ 1 boinc boinc     36322 Dec 16 02:07 runpilot2-wrapper.sh
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc      5112 Dec 16 02:09 queuedata.json
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc    579449 Dec 16 02:09 pilot3.tar.gz
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc       100 Dec 17 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 21:43:19] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 20:37 run_atlas
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc       105 Dec 17 20:37 job.xml
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc 215637527 Dec 17 20:37 EVNT.47898833._000132.pool.root.1
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc     15847 Dec 17 20:37 start_atlas.sh
[2025-12-17 21:43:19] drwxrwx--x 2 boinc boinc      4096 Dec 17 20:37 shared
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc    592409 Dec 17 20:37 input.tar.gz
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc      9417 Dec 17 20:37 init_data.xml
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc         0 Dec 17 20:37 boinc_setup_complete
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc         0 Dec 17 20:37 boinc_lockfile
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc      2552 Dec 17 20:37 pandaJob.out
[2025-12-17 21:43:19] -rw------- 1 boinc boinc    988150 Dec 17 20:37 agis_schedconf.cvmfs.json
[2025-12-17 21:43:19] -rw------- 1 boinc boinc   1516240 Dec 17 20:37 agis_ddmendpoints.agis.ALL.json
[2025-12-17 21:43:19] drwx------ 5 boinc boinc      4096 Dec 17 20:37 pilot3
[2025-12-17 21:43:19] -rw------- 1 boinc boinc 201702799 Dec 17 21:41 HITS.47898836._003370.pool.root.1
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc       529 Dec 17 21:42 boinc_task_state.xml
[2025-12-17 21:43:19] -rw------- 1 boinc boinc      1029 Dec 17 21:42 memory_monitor_summary.json
[2025-12-17 21:43:19] -rw------- 1 boinc boinc    389624 Dec 17 21:42 log.47898836._003370.job.log.tgz.1
[2025-12-17 21:43:19] -rw------- 1 boinc boinc      7752 Dec 17 21:42 heartbeat.json
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc        27 Dec 17 21:43 wrapper_checkpoint.txt
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc      8192 Dec 17 21:43 boinc_mmap_file
[2025-12-17 21:43:19] -rw------- 1 boinc boinc       823 Dec 17 21:43 pilotlog.txt
[2025-12-17 21:43:19] -rw------- 1 boinc boinc        95 Dec 17 21:43 pilot_heartbeat.json
[2025-12-17 21:43:19] -rw------- 1 boinc boinc    569238 Dec 17 21:43 log.47898836._003370.job.log.1
[2025-12-17 21:43:19] -rw------- 1 boinc boinc       357 Dec 17 21:43 output.list
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc       620 Dec 17 21:43 runtime_log
[2025-12-17 21:43:19] -rw------- 1 boinc boinc    972800 Dec 17 21:43 result.tar.gz
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc      8788 Dec 17 21:43 runtime_log.err
[2025-12-17 21:43:19] -rw------- 1 boinc boinc       643 Dec 17 21:43 aD2MDmUeZp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOkUKDmeVfKSo.diag
[2025-12-17 21:43:19] -rw-r--r-- 1 boinc boinc     21642 Dec 17 21:43 stderr.txt
[2025-12-17 21:43:19] HITS file was successfully produced:
[2025-12-17 21:43:19] -rw------- 1 boinc boinc 201702799 Dec 17 21:41 shared/HITS.pool.root.1
[2025-12-17 21:43:19]  *** Contents of shared directory: ***
[2025-12-17 21:43:19] total 409116
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc 215637527 Dec 17 20:37 ATLAS.root_0
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc     15847 Dec 17 20:37 start_atlas.sh
[2025-12-17 21:43:19] -rw-r--r-- 2 boinc boinc    592409 Dec 17 20:37 input.tar.gz
[2025-12-17 21:43:19] -rw------- 1 boinc boinc 201702799 Dec 17 21:41 HITS.pool.root.1
[2025-12-17 21:43:19] -rw------- 1 boinc boinc    972800 Dec 17 21:43 result.tar.gz
21:43:21 (2207979): run_atlas exited; CPU time 42537.015652
21:43:21 (2207979): called boinc_finish(0)

</stderr_txt>
]]>

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