Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:13:13 (2674410): wrapper (7.7.26015): starting
14:13:13 (2674410): wrapper: running run_atlas (--nthreads 9)
[2025-12-17 14:13:13] Arguments: --nthreads 9
[2025-12-17 14:13:13] Threads: 9
[2025-12-17 14:13:13] Checking for CVMFS
[2025-12-17 14:13:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 14:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 14:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 14:13:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 14:13:15] 2.13.3.0 9438 60673 226336 154120 3 704 33796686 40960000 47227 16776704 0 967741554 99.760 624819811 46056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-17 14:13:15] CVMFS is ok
[2025-12-17 14:13:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 14:13:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 14:13:15] Further information can be found at the LHC@home message board.
[2025-12-17 14:13:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 14:13:15] Checking for apptainer binary...
[2025-12-17 14:13:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 14:13:15] Running /usr/bin/apptainer --version
[2025-12-17 14:13:15] apptainer version 1.4.5-2.el9
[2025-12-17 14:13:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 14:13:16] c8-7-3.aglt2.org
[2025-12-17 14:13:16] apptainer works
[2025-12-17 14:13:16] Set ATHENA_PROC_NUMBER=9
[2025-12-17 14:13:16] Set ATHENA_CORE_NUMBER=9
[2025-12-17 14:13:16] Starting ATLAS job with PandaID=6930228811
[2025-12-17 14:13:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 16:33:20]  *** The last 200 lines of the pilot log: ***
[2025-12-17 16:33:20] 2025-12-17 21:32:37,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:33:20] 2025-12-17 21:32:38,607 | INFO     | time since job start (8263s) is within the limit (174528.0s)
[2025-12-17 16:33:20] 2025-12-17 21:32:40,481 | INFO     | monitor loop #526: job 0:6930228811 is in state 'finished'
[2025-12-17 16:33:20] 2025-12-17 21:32:40,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:33:20] 2025-12-17 21:32:40,633 | INFO     | time since job start (8265s) is within the limit (174528.0s)
[2025-12-17 16:33:20] 2025-12-17 21:32:42,657 | INFO     | time since job start (8267s) is within the limit (174528.0s)
[2025-12-17 16:33:20] 2025-12-17 21:32:42,967 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 16:33:20] 2025-12-17 21:32:42,992 | INFO     | monitor loop #527: job 0:6930228811 is in state 'finished'
[2025-12-17 16:33:20] 2025-12-17 21:32:42,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:33:20] 2025-12-17 21:32:42,992 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.0410078125005
[2025-12-17 16:33:20] 2025-12-17 21:32:43,019 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6930228811/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,020 | INFO     | extracted standard info from prmon json
[2025-12-17 16:33:20] 2025-12-17 21:32:43,020 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 16:33:20] 2025-12-17 21:32:43,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 16:33:20] 2025-12-17 21:32:43,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 16:33:20] 2025-12-17 21:32:43,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 16:33:20] 2025-12-17 21:32:43,024 | INFO     | fitting pss+swap vs Time
[2025-12-17 16:33:20] 2025-12-17 21:32:43,024 | INFO     | sum of square deviations: 729502305.248119
[2025-12-17 16:33:20] 2025-12-17 21:32:43,024 | INFO     | sum of deviations: 13215995268.436094
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | mean x: 1766003080.075188
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | mean y: 2511607.5563909775
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | intersect: -31991202713.029617
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | chi2: 3.532589273011715
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | sum of square deviations: 650269279.5
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | sum of deviations: 21233735895.25
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | mean x: 1766002927.5625
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | mean y: 2526542.84375
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | intersect: -57664106244.93573
[2025-12-17 16:33:20] 2025-12-17 21:32:43,025 | INFO     | chi2: 2.8372687115064226
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | current chi2=2.8372687115064226 (change=19.6830287295895 %)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | right removable region: 127
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | sum of square deviations: 650279165.21875
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | sum of deviations: -19722928378.25
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | mean x: 1766003232.578125
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | mean y: 2574491.625
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | intersect: 53565347428.04452
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | chi2: 0.8723335237614577
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | current chi2=0.8723335237614577 (change=75.30611525019583 %)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,026 | INFO     | sum of square deviations: 577009625.1869906
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | sum of deviations: -23892831175.691055
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | mean x: 1766003385.0813007
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | mean y: 2583057.5691056913
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | intersect: 73129302082.009
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | chi2: 0.7854213176614931
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | current chi2=0.7854213176614931 (change=9.963185379509838 %)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | left removable region: 20
[2025-12-17 16:33:20] 2025-12-17 21:32:43,027 | INFO     | sum of square deviations: 379840053.4018699
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | sum of deviations: -11513107550.214952
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | mean x: 1766003507.0747664
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | mean y: 2593628.4018691587
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | intersect: 53530883046.30897
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | chi2: 0.03171566588039576
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | current memory leak: -30.31 B/s (using 107 data points, chi2=0.03)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | could have reported an average CPU frequency of 3720 MHz (8 samples)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | ..............................
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | . Timing measurements:
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | . get job = 0 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | . initial setup = 6 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,028 | INFO     | . payload setup = 44 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,029 | INFO     | . stage-in = 0 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,029 | INFO     | . payload execution = 8096 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,029 | INFO     | . stage-out = 1 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,029 | INFO     | . log creation = 0 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,029 | INFO     | ..............................
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | 
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | job summary report
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | --------------------------------------------------
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | PanDA job id: 6930228811
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | task id: 47905907
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | errors: (none)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | pilot state: finished 
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | transexitcode: 0
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | exeerrorcode: 0
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | exeerrordiag: 
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | exitcode: 0
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | exitmsg: OK
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | cpuconsumptiontime: 35305 s
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | nevents: 400
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | neventsw: 0
[2025-12-17 16:33:20] 2025-12-17 21:32:43,344 | INFO     | pid: 2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | pgrp: 2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | corecount: 9
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | event service: False
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | sizes: {0: 2283681, 2: 2283765, 3: 2283964, 14: 2283964, 25: 2283992, 35: 2284020, 46: 2284466, 8145: 2312133, 8146: 2312132, 8148: 2321186, 8150: 2321242, 8189: 2
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | --------------------------------------------------
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | 
[2025-12-17 16:33:20] 2025-12-17 21:32:43,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-17 16:33:20] 2025-12-17 21:32:43,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,474 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 16:33:20] 2025-12-17 21:32:43,474 | INFO     | job 6930228811 has completed (purged errors)
[2025-12-17 16:33:20] 2025-12-17 21:32:43,474 | INFO     | overall cleanup function is called
[2025-12-17 16:33:20] 2025-12-17 21:32:44,484 | INFO     | --- collectZombieJob: --- 10, [2739707]
[2025-12-17 16:33:20] 2025-12-17 21:32:44,484 | INFO     | zombie collector waiting for pid 2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:44,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 16:33:20] 2025-12-17 21:32:44,484 | INFO     | collected zombie processes
[2025-12-17 16:33:20] 2025-12-17 21:32:44,484 | INFO     | will attempt to kill all subprocesses of pid=2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:46,021 | INFO     | process IDs to be killed: [2739707] (in reverse order)
[2025-12-17 16:33:20] 2025-12-17 21:32:47,310 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 16:33:20] 2025-12-17 21:32:47,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 16:33:20] 2025-12-17 21:32:47,346 | INFO     | did not find any defunct processes belonging to 2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:47,391 | INFO     | did not find any defunct processes belonging to 2739707
[2025-12-17 16:33:20] 2025-12-17 21:32:47,391 | INFO     | ready for new job
[2025-12-17 16:33:20] 2025-12-17 21:32:47,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 16:33:20] 2025-12-17 21:32:47,393 | INFO     | ***************************************
[2025-12-17 16:33:20] 2025-12-17 21:32:47,393 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 16:33:20] 2025-12-17 21:32:47,393 | INFO     | ***************************************
[2025-12-17 16:33:20] 2025-12-17 21:32:47,393 | INFO     | 
[2025-12-17 16:33:20] 2025-12-17 21:32:47,413 | INFO     | architecture information:
[2025-12-17 16:33:20] 2025-12-17 21:32:47,413 | INFO     | executing command: cat /etc/os-release
[2025-12-17 16:33:20] 2025-12-17 21:32:47,463 | INFO     | cat /etc/os-release:
[2025-12-17 16:33:20] NAME="CentOS Linux"
[2025-12-17 16:33:20] VERSION="7 (Core)"
[2025-12-17 16:33:20] ID="centos"
[2025-12-17 16:33:20] ID_LIKE="rhel fedora"
[2025-12-17 16:33:20] VERSION_ID="7"
[2025-12-17 16:33:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 16:33:20] ANSI_COLOR="0;31"
[2025-12-17 16:33:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 16:33:20] HOME_URL="https://www.centos.org/"
[2025-12-17 16:33:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 16:33:20] 
[2025-12-17 16:33:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 16:33:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 16:33:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 16:33:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 16:33:20] 
[2025-12-17 16:33:20] 2025-12-17 21:32:47,463 | INFO     | ***************************************
[2025-12-17 16:33:20] 2025-12-17 21:32:47,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-17 16:33:20] 2025-12-17 21:32:48,085 | INFO     | sufficient remaining disk space (168645623808 B)
[2025-12-17 16:33:20] 2025-12-17 21:32:48,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 16:33:20] 2025-12-17 21:32:48,085 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 16:33:20] 2025-12-17 21:32:48,086 | INFO     | update_server=False
[2025-12-17 16:33:20] 2025-12-17 21:32:48,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 16:33:20] 2025-12-17 21:32:48,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 16:33:20] 2025-12-17 21:32:48,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:33:20] 2025-12-17 21:32:48,479 | INFO     | all job control threads have been joined
[2025-12-17 16:33:20] 2025-12-17 21:32:48,893 | INFO     | all data control threads have been joined
[2025-12-17 16:33:20] 2025-12-17 21:32:49,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:33:20] 2025-12-17 21:32:49,039 | INFO     | aborting loop
[2025-12-17 16:33:20] 2025-12-17 21:32:49,092 | INFO     | [job] retrieve thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,249 | INFO     | [job] queue monitor thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,265 | INFO     | [payload] validate_post thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,360 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,483 | INFO     | all payload control threads have been joined
[2025-12-17 16:33:20] 2025-12-17 21:32:49,484 | INFO     | [job] control thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,555 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,900 | INFO     | [data] control thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:49,933 | INFO     | [job] validate thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,047 | INFO     | [job] job monitor thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,047 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,102 | INFO     | [data] copytool_out thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,142 | INFO     | [data] copytool_in thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,206 | INFO     | [payload] failed_post thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:50,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 16:33:20] 2025-12-17 21:32:50,488 | INFO     | [payload] control thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:54,465 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:32:58,409 | INFO     | job.realtimelogging is not enabled
[2025-12-17 16:33:20] 2025-12-17 21:32:59,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 16:33:20] 2025-12-17 21:33:08,808 | INFO     | [monitor] cgroup control has ended
[2025-12-17 16:33:20] 2025-12-17 21:33:10,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427595016000)>', '<ExcThread(monitor, started 140426791065344)>']
[2025-12-17 16:33:20] 2025-12-17 21:33:15,851 | INFO     | all workflow threads have been joined
[2025-12-17 16:33:20] 2025-12-17 21:33:15,851 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 16:33:20] 2025-12-17 21:33:15,851 | INFO     | traces error code: 0
[2025-12-17 16:33:20] 2025-12-17 21:33:15,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 16:33:20] 2025-12-17 21:33:17,378 | INFO     | PID=2702854 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | INFO     | .. there are 40 such processes running
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 16:33:20] 2025-12-17 21:33:17,379 | INFO     | [monitor] control thread has ended
[2025-12-17 16:33:20] 2025-12-17 21:33:18,678 [wrapper] ==== pilot stdout END ====
[2025-12-17 16:33:20] 2025-12-17 21:33:18,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 16:33:20] 2025-12-17 21:33:18,711 [wrapper] pilotpid: 2702854
[2025-12-17 16:33:20] 2025-12-17 21:33:18,721 [wrapper] Pilot exit status: 0
[2025-12-17 16:33:20] 2025-12-17 21:33:18,808 [wrapper] pandaids: 6930228811
[2025-12-17 16:33:20] 2025-12-17 21:33:19,126 [wrapper] cleanup supervisor_pilot  451547 2702855
[2025-12-17 16:33:20] 2025-12-17 21:33:19,158 [wrapper] Test setup, not cleaning
[2025-12-17 16:33:20] 2025-12-17 21:33:19,222 [wrapper] apfmon messages muted
[2025-12-17 16:33:20] 2025-12-17 21:33:19,251 [wrapper] ==== wrapper stdout END ====
[2025-12-17 16:33:20] 2025-12-17 21:33:19,283 [wrapper] ==== wrapper stderr END ====
[2025-12-17 16:33:20]  *** Error codes and diagnostics ***
[2025-12-17 16:33:20]     "exeErrorCode": 0,
[2025-12-17 16:33:20]     "exeErrorDiag": "",
[2025-12-17 16:33:20]     "pilotErrorCode": 0,
[2025-12-17 16:33:20]     "pilotErrorDiag": "",
[2025-12-17 16:33:20]  *** Listing of results directory ***
[2025-12-17 16:33:20] total 403300
[2025-12-17 16:33:20] -rwx------. 1 boincer umatlas     36322 Dec 15 21:07 runpilot2-wrapper.sh
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 21:09 queuedata.json
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 21:09 pilot3.tar.gz
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas       100 Dec 17 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 16:33:20] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 17 14:13 run_atlas
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas       105 Dec 17 14:13 job.xml
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas 205712407 Dec 17 14:13 EVNT.47905905._000034.pool.root.1
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 14:13 start_atlas.sh
[2025-12-17 16:33:20] drwxrwx--x. 2 boincer umatlas      4096 Dec 17 14:13 shared
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas    592380 Dec 17 14:13 input.tar.gz
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas         0 Dec 17 14:13 boinc_lockfile
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas      2475 Dec 17 14:13 pandaJob.out
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas        57 Dec 17 14:13 setup.sh.local
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas    988136 Dec 17 14:14 agis_schedconf.cvmfs.json
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas   1516240 Dec 17 14:14 agis_ddmendpoints.agis.ALL.json
[2025-12-17 16:33:20] drwx------. 5 boincer umatlas      4096 Dec 17 14:14 pilot3
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas 200427577 Dec 17 16:30 HITS.47905907._000823.pool.root.1
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas       529 Dec 17 16:30 boinc_task_state.xml
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas      7171 Dec 17 16:31 init_data.xml
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas      1052 Dec 17 16:31 memory_monitor_summary.json
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas    399565 Dec 17 16:32 log.47905907._000823.job.log.tgz.1
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas        95 Dec 17 16:32 pilot_heartbeat.json
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas      7792 Dec 17 16:32 heartbeat.json
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas      8192 Dec 17 16:33 boinc_mmap_file
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas        27 Dec 17 16:33 wrapper_checkpoint.txt
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas       823 Dec 17 16:33 pilotlog.txt
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas   1063285 Dec 17 16:33 log.47905907._000823.job.log.1
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas       357 Dec 17 16:33 output.list
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas       620 Dec 17 16:33 runtime_log
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas   1484800 Dec 17 16:33 result.tar.gz
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas      9332 Dec 17 16:33 runtime_log.err
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas       656 Dec 17 16:33 QP5KDmWeZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWBZKDmujMHGo.diag
[2025-12-17 16:33:20] -rw-r--r--. 1 boincer umatlas     21395 Dec 17 16:33 stderr.txt
[2025-12-17 16:33:20] HITS file was successfully produced:
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas 200427577 Dec 17 16:30 shared/HITS.pool.root.1
[2025-12-17 16:33:20]  *** Contents of shared directory: ***
[2025-12-17 16:33:20] total 398676
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas 205712407 Dec 17 14:13 ATLAS.root_0
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 14:13 start_atlas.sh
[2025-12-17 16:33:20] -rw-r--r--. 2 boincer umatlas    592380 Dec 17 14:13 input.tar.gz
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas 200427577 Dec 17 16:30 HITS.pool.root.1
[2025-12-17 16:33:20] -rw-------. 1 boincer umatlas   1484800 Dec 17 16:33 result.tar.gz
16:33:21 (2674410): run_atlas exited; CPU time 35564.139446
16:33:21 (2674410): called boinc_finish(0)

</stderr_txt>
]]>

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