Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:41:12 (3164197): wrapper (7.7.26015): starting
03:41:12 (3164197): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 03:41:12] Arguments: --nthreads 4
[2025-12-18 03:41:12] Threads: 4
[2025-12-18 03:41:12] Checking for CVMFS
[2025-12-18 03:41:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 03:41:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 03:41:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 03:41:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 03:41:13] 2.13.1.0 9815 6174 88444 154130 2 188 9176525 10240000 911 130560 0 7907484 99.936 543407 415 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-18 03:41:13] CVMFS is ok
[2025-12-18 03:41:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 03:41:13] Checking for apptainer binary...
[2025-12-18 03:41:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 03:41:13] Running /usr/bin/apptainer --version
[2025-12-18 03:41:13] apptainer version 1.4.5
[2025-12-18 03:41:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 03:41:13] atlas6l1
[2025-12-18 03:41:13] apptainer works
[2025-12-18 03:41:13] Set ATHENA_PROC_NUMBER=4
[2025-12-18 03:41:13] Set ATHENA_CORE_NUMBER=4
[2025-12-18 03:41:13] Starting ATLAS job with PandaID=6932081280
[2025-12-18 03:41:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 06:06:43]  *** The last 200 lines of the pilot log: ***
[2025-12-18 06:06:43] 2025-12-18 05:05:57,574 | INFO     | time since job start (8674s) is within the limit (174528.0s)
[2025-12-18 06:06:43] 2025-12-18 05:05:57,644 | INFO     | monitor loop #660: job 0:6932081280 is in state 'finished'
[2025-12-18 06:06:43] 2025-12-18 05:05:57,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 06:06:43] 2025-12-18 05:05:59,580 | INFO     | time since job start (8676s) is within the limit (174528.0s)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,145 | INFO     | monitor loop #661: job 0:6932081280 is in state 'finished'
[2025-12-18 06:06:43] 2025-12-18 05:06:00,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,830 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-18 06:06:43] 2025-12-18 05:06:00,830 | INFO     | found 16 cores (1 core per socket, 16 sockets) , CPU MHz: 2400.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,832 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6932081280/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,832 | INFO     | extracted standard info from prmon json
[2025-12-18 06:06:43] 2025-12-18 05:06:00,832 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 06:06:43] 2025-12-18 05:06:00,832 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 06:06:43] 2025-12-18 05:06:00,833 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 06:06:43] 2025-12-18 05:06:00,833 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 06:06:43] 2025-12-18 05:06:00,834 | INFO     | fitting pss+swap vs Time
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | sum of square deviations: 887813855.5
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | sum of deviations: 9716368682.500008
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | mean x: 1766030004.5
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | mean y: 2375105.6549295774
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | intersect: -19325323512.447056
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | chi2: 1.816760561606544
[2025-12-18 06:06:43] 2025-12-18 05:06:00,835 | INFO     | sum of square deviations: 797291228.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | sum of deviations: 9425488688.00001
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | mean x: 1766029852.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | mean y: 2374615.437956204
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | intersect: -20875434907.754654
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | chi2: 1.819174343008361
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | current chi2=1.819174343008361 (change=-0.13286183401528276 %)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | right removable region: 136
[2025-12-18 06:06:43] 2025-12-18 05:06:00,836 | INFO     | sum of square deviations: 797291228.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | sum of deviations: -14053748093.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | mean x: 1766030157.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | mean y: 2414591.868613139
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | intersect: 31131996957.121025
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | chi2: 0.06863022921142287
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | current chi2=0.06863022921142287 (change=96.22238446486675 %)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,837 | INFO     | sum of square deviations: 713140813.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | sum of deviations: -12490638586.999998
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | mean x: 1766030309.5
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | mean y: 2411715.6666666665
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | intersect: 30934376241.51726
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | chi2: 0.06483518360550239
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | current chi2=0.06483518360550239 (change=5.52969973949734 %)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | left removable region: 20
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | sum of square deviations: 483971865.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | sum of deviations: -6135215422.0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | mean x: 1766030431.5
[2025-12-18 06:06:43] 2025-12-18 05:06:00,838 | INFO     | mean y: 2399777.672413793
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | intersect: 22390017576.612263
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | chi2: 0.046813830175457975
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | current memory leak: -12.68 B/s (using 116 data points, chi2=0.05)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | could have reported an average CPU frequency of 2400 MHz (8 samples)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | ..............................
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . Timing measurements:
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . get job = 0 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . initial setup = 4 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . payload setup = 3 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . stage-in = 0 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . payload execution = 8650 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . stage-out = 0 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | . log creation = 0 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,839 | INFO     | ..............................
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | 
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | job summary report
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | --------------------------------------------------
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | PanDA job id: 6932081280
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | task id: 47928788
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | errors: (none)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | pilot state: finished 
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | transexitcode: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | exeerrorcode: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | exeerrordiag: 
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | exitcode: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | exitmsg: OK
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | cpuconsumptiontime: 33274 s
[2025-12-18 06:06:43] 2025-12-18 05:06:00,887 | INFO     | nevents: 400
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | neventsw: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | pid: 3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | pgrp: 3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | corecount: 4
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | event service: False
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | sizes: {0: 2284061, 3: 2284323, 11: 2284351, 8657: 2312627, 8658: 2321709, 8663: 2321847}
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | --------------------------------------------------
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | 
[2025-12-18 06:06:43] 2025-12-18 05:06:00,888 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 06:06:43] 2025-12-18 05:06:00,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 06:06:43] 2025-12-18 05:06:00,904 | INFO     | job 6932081280 has completed (purged errors)
[2025-12-18 06:06:43] 2025-12-18 05:06:00,904 | INFO     | overall cleanup function is called
[2025-12-18 06:06:43] 2025-12-18 05:06:01,911 | INFO     | --- collectZombieJob: --- 10, [3174548]
[2025-12-18 06:06:43] 2025-12-18 05:06:01,912 | INFO     | zombie collector waiting for pid 3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:01,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 06:06:43] 2025-12-18 05:06:01,912 | INFO     | collected zombie processes
[2025-12-18 06:06:43] 2025-12-18 05:06:01,912 | INFO     | will attempt to kill all subprocesses of pid=3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:01,996 | INFO     | process IDs to be killed: [3174548] (in reverse order)
[2025-12-18 06:06:43] 2025-12-18 05:06:02,026 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 06:06:43] 2025-12-18 05:06:02,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 06:06:43] 2025-12-18 05:06:02,031 | INFO     | did not find any defunct processes belonging to 3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:02,033 | INFO     | did not find any defunct processes belonging to 3174548
[2025-12-18 06:06:43] 2025-12-18 05:06:02,033 | INFO     | ready for new job
[2025-12-18 06:06:43] 2025-12-18 05:06:02,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 06:06:43] 2025-12-18 05:06:02,034 | INFO     | ***************************************
[2025-12-18 06:06:43] 2025-12-18 05:06:02,034 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 06:06:43] 2025-12-18 05:06:02,035 | INFO     | ***************************************
[2025-12-18 06:06:43] 2025-12-18 05:06:02,035 | INFO     | 
[2025-12-18 06:06:43] 2025-12-18 05:06:02,035 | INFO     | pilot is running in a VM
[2025-12-18 06:06:43] 2025-12-18 05:06:02,035 | INFO     | architecture information:
[2025-12-18 06:06:43] 2025-12-18 05:06:02,035 | INFO     | executing command: cat /etc/os-release
[2025-12-18 06:06:43] 2025-12-18 05:06:02,046 | INFO     | cat /etc/os-release:
[2025-12-18 06:06:43] NAME="CentOS Linux"
[2025-12-18 06:06:43] VERSION="7 (Core)"
[2025-12-18 06:06:43] ID="centos"
[2025-12-18 06:06:43] ID_LIKE="rhel fedora"
[2025-12-18 06:06:43] VERSION_ID="7"
[2025-12-18 06:06:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 06:06:43] ANSI_COLOR="0;31"
[2025-12-18 06:06:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 06:06:43] HOME_URL="https://www.centos.org/"
[2025-12-18 06:06:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 06:06:43] 
[2025-12-18 06:06:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 06:06:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 06:06:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 06:06:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 06:06:43] 
[2025-12-18 06:06:43] 2025-12-18 05:06:02,046 | INFO     | ***************************************
[2025-12-18 06:06:43] 2025-12-18 05:06:02,550 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | INFO     | sufficient remaining disk space (156934078464 B)
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | INFO     | update_server=False
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 06:06:43] 2025-12-18 05:06:02,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 06:06:43] 2025-12-18 05:06:02,649 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-18 06:06:43] 2025-12-18 05:06:02,649 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-18 06:06:43] 2025-12-18 05:06:02,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 06:06:43] 2025-12-18 05:06:02,649 | INFO     | will abort loop
[2025-12-18 06:06:43] 2025-12-18 05:06:02,857 | INFO     | all data control threads have been joined
[2025-12-18 06:06:43] 2025-12-18 05:06:03,024 | INFO     | all payload control threads have been joined
[2025-12-18 06:06:43] 2025-12-18 05:06:03,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 06:06:43] 2025-12-18 05:06:03,563 | INFO     | [job] retrieve thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:03,568 | INFO     | [job] queue monitor thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:03,654 | INFO     | [job] job monitor thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:03,863 | INFO     | [data] control thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:03,875 | INFO     | [data] copytool_in thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,030 | INFO     | [payload] control thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,051 | INFO     | all job control threads have been joined
[2025-12-18 06:06:43] 2025-12-18 05:06:04,094 | INFO     | [payload] failed_post thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,102 | INFO     | [job] validate thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,412 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,467 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:04,694 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:05,057 | INFO     | [job] control thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:05,119 | INFO     | [payload] validate_post thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:05,526 | INFO     | [data] copytool_out thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:06,566 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 06:06:43] 2025-12-18 05:06:32,776 | INFO     | PID=3168001 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 06:06:43] 2025-12-18 05:06:32,776 | INFO     | .. there are 2 such processes running
[2025-12-18 06:06:43] 2025-12-18 05:06:32,776 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 06:06:43] 2025-12-18 05:06:32,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 06:06:43] 2025-12-18 05:06:32,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 06:06:43] 2025-12-18 05:06:36,429 | INFO     | [monitor] cgroup control has ended
[2025-12-18 06:06:43] 2025-12-18 05:06:38,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127974567778112)>', '<ExcThread(monitor, started 127973776680704)>']
[2025-12-18 06:06:43] 2025-12-18 05:06:38,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 06:06:43] 2025-12-18 05:06:38,809 | INFO     | [monitor] control thread has ended
[2025-12-18 06:06:43] 2025-12-18 05:06:43,544 | INFO     | all workflow threads have been joined
[2025-12-18 06:06:43] 2025-12-18 05:06:43,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 06:06:43] 2025-12-18 05:06:43,544 | INFO     | traces error code: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:43,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 06:06:43] 2025-12-18 05:06:43,616 [wrapper] ==== pilot stdout END ====
[2025-12-18 06:06:43] 2025-12-18 05:06:43,621 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 06:06:43] 2025-12-18 05:06:43,626 [wrapper] pilotpid: 3168001
[2025-12-18 06:06:43] 2025-12-18 05:06:43,630 [wrapper] Pilot exit status: 0
[2025-12-18 06:06:43] 2025-12-18 05:06:43,645 [wrapper] pandaids: 6932081280
[2025-12-18 06:06:43] 2025-12-18 05:06:43,674 [wrapper] cleanup supervisor_pilot 3226678 3168002
[2025-12-18 06:06:43] 2025-12-18 05:06:43,679 [wrapper] Test setup, not cleaning
[2025-12-18 06:06:43] 2025-12-18 05:06:43,682 [wrapper] apfmon messages muted
[2025-12-18 06:06:43] 2025-12-18 05:06:43,688 [wrapper] ==== wrapper stdout END ====
[2025-12-18 06:06:43] 2025-12-18 05:06:43,693 [wrapper] ==== wrapper stderr END ====
[2025-12-18 06:06:43]  *** Error codes and diagnostics ***
[2025-12-18 06:06:43]     "exeErrorCode": 0,
[2025-12-18 06:06:43]     "exeErrorDiag": "",
[2025-12-18 06:06:43]     "pilotErrorCode": 0,
[2025-12-18 06:06:43]     "pilotErrorDiag": "",
[2025-12-18 06:06:43]  *** Listing of results directory ***
[2025-12-18 06:06:43] insgesamt 625740
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc    579449 Dez 17 06:30 pilot3.tar.gz
[2025-12-18 06:06:43] -rwx------ 1 yeti boinc     36322 Dez 17 06:33 runpilot2-wrapper.sh
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc      5112 Dez 17 06:35 queuedata.json
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc       100 Dez 18 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 06:06:43] -rwxr-xr-x 1 yeti boinc      7986 Dez 18 03:41 run_atlas
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc       105 Dez 18 03:41 job.xml
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc 330944706 Dez 18 03:41 EVNT.47928786._000009.pool.root.1
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc     15847 Dez 18 03:41 start_atlas.sh
[2025-12-18 06:06:43] drwxrwx--x 2 yeti boinc      4096 Dez 18 03:41 shared
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc    592411 Dez 18 03:41 input.tar.gz
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc      6594 Dez 18 03:41 init_data.xml
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc         0 Dez 18 03:41 boinc_setup_complete
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc         0 Dez 18 03:41 boinc_lockfile
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc      2577 Dez 18 03:41 pandaJob.out
[2025-12-18 06:06:43] -rw------- 1 yeti boinc    988110 Dez 18 03:41 agis_schedconf.cvmfs.json
[2025-12-18 06:06:43] -rw------- 1 yeti boinc   1516240 Dez 18 03:41 agis_ddmendpoints.agis.ALL.json
[2025-12-18 06:06:43] drwx------ 5 yeti boinc      4096 Dez 18 03:41 pilot3
[2025-12-18 06:06:43] -rw------- 1 yeti boinc 302702992 Dez 18 06:05 HITS.47928788._000208.pool.root.1
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc       529 Dez 18 06:05 boinc_task_state.xml
[2025-12-18 06:06:43] -rw------- 1 yeti boinc      1023 Dez 18 06:05 memory_monitor_summary.json
[2025-12-18 06:06:43] -rw------- 1 yeti boinc    319246 Dez 18 06:05 log.47928788._000208.job.log.tgz.1
[2025-12-18 06:06:43] -rw------- 1 yeti boinc      7777 Dez 18 06:06 heartbeat.json
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc      8192 Dez 18 06:06 boinc_mmap_file
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc        27 Dez 18 06:06 wrapper_checkpoint.txt
[2025-12-18 06:06:43] -rw------- 1 yeti boinc        95 Dez 18 06:06 pilot_heartbeat.json
[2025-12-18 06:06:43] -rw------- 1 yeti boinc      5086 Dez 18 06:06 pilotlog.txt
[2025-12-18 06:06:43] -rw------- 1 yeti boinc   1275530 Dez 18 06:06 log.47928788._000208.job.log.1
[2025-12-18 06:06:43] -rw------- 1 yeti boinc       357 Dez 18 06:06 output.list
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc       620 Dez 18 06:06 runtime_log
[2025-12-18 06:06:43] -rw------- 1 yeti boinc   1617920 Dez 18 06:06 result.tar.gz
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc      9017 Dez 18 06:06 runtime_log.err
[2025-12-18 06:06:43] -rw------- 1 yeti boinc       640 Dez 18 06:06 h2rLDmYLzp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEZbKDm9RrfQm.diag
[2025-12-18 06:06:43] -rw-r--r-- 1 yeti boinc     20960 Dez 18 06:06 stderr.txt
[2025-12-18 06:06:43] HITS file was successfully produced:
[2025-12-18 06:06:43] -rw------- 1 yeti boinc 302702992 Dez 18 06:05 shared/HITS.pool.root.1
[2025-12-18 06:06:43]  *** Contents of shared directory: ***
[2025-12-18 06:06:43] insgesamt 620988
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc 330944706 Dez 18 03:41 ATLAS.root_0
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc     15847 Dez 18 03:41 start_atlas.sh
[2025-12-18 06:06:43] -rw-r--r-- 2 yeti boinc    592411 Dez 18 03:41 input.tar.gz
[2025-12-18 06:06:43] -rw------- 1 yeti boinc 302702992 Dez 18 06:05 HITS.pool.root.1
[2025-12-18 06:06:43] -rw------- 1 yeti boinc   1617920 Dez 18 06:06 result.tar.gz
06:06:45 (3164197): run_atlas exited; CPU time 33383.238594
06:06:45 (3164197): called boinc_finish(0)

</stderr_txt>
]]>

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