Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:58:36 (1765808): wrapper (7.7.26015): starting
07:58:36 (1765808): wrapper: running run_atlas (--nthreads 2)
[2025-12-18 07:58:36] Arguments: --nthreads 2
[2025-12-18 07:58:36] Threads: 2
[2025-12-18 07:58:36] Checking for CVMFS
[2025-12-18 07:58:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 07:58:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 07:58:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 07:58:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 07:58:36] 2.9.2.0 357904 7307 64292 154137 3 57 28142197 36864000 0 130560 0 3705534 99.987 258387 15143 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 07:58:36] CVMFS is ok
[2025-12-18 07:58:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 07:58:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 07:58:36] Further information can be found at the LHC@home message board.
[2025-12-18 07:58:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 07:58:36] Checking for apptainer binary...
[2025-12-18 07:58:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 07:58:36] Running /usr/bin/apptainer --version
[2025-12-18 07:58:36] apptainer version 1.4.1-1.1
[2025-12-18 07:58:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 07:58:36] atlasA229
[2025-12-18 07:58:36] apptainer works
[2025-12-18 07:58:36] Set ATHENA_PROC_NUMBER=2
[2025-12-18 07:58:36] Set ATHENA_CORE_NUMBER=2
[2025-12-18 07:58:36] Starting ATLAS job with PandaID=6932417714
[2025-12-18 07:58:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 10:48:10]  *** The last 200 lines of the pilot log: ***
[2025-12-18 10:48:10] 2025-12-18 09:47:05,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | job 6932417714 has completed (purged errors)
[2025-12-18 10:48:10] 2025-12-18 09:47:05,090 | INFO     | overall cleanup function is called
[2025-12-18 10:48:10] 2025-12-18 09:47:06,096 | INFO     | --- collectZombieJob: --- 10, [1775938]
[2025-12-18 10:48:10] 2025-12-18 09:47:06,096 | INFO     | zombie collector waiting for pid 1775938
[2025-12-18 10:48:10] 2025-12-18 09:47:06,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 10:48:10] 2025-12-18 09:47:06,097 | INFO     | collected zombie processes
[2025-12-18 10:48:10] 2025-12-18 09:47:06,097 | INFO     | will attempt to kill all subprocesses of pid=1775938
[2025-12-18 10:48:10] 2025-12-18 09:47:06,131 | INFO     | process IDs to be killed: [1775938] (in reverse order)
[2025-12-18 10:48:10] 2025-12-18 09:47:06,153 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 10:48:10] 2025-12-18 09:47:06,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 10:48:10] 2025-12-18 09:47:06,157 | INFO     | did not find any defunct processes belonging to 1775938
[2025-12-18 10:48:10] 2025-12-18 09:47:06,159 | INFO     | did not find any defunct processes belonging to 1775938
[2025-12-18 10:48:10] 2025-12-18 09:47:06,160 | INFO     | ready for new job
[2025-12-18 10:48:10] 2025-12-18 09:47:06,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 10:48:10] 2025-12-18 09:47:06,162 | INFO     | ***************************************
[2025-12-18 10:48:10] 2025-12-18 09:47:06,162 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 10:48:10] 2025-12-18 09:47:06,162 | INFO     | ***************************************
[2025-12-18 10:48:10] 2025-12-18 09:47:06,162 | INFO     | 
[2025-12-18 10:48:10] 2025-12-18 09:47:06,163 | INFO     | architecture information:
[2025-12-18 10:48:10] 2025-12-18 09:47:06,164 | INFO     | executing command: cat /etc/os-release
[2025-12-18 10:48:10] 2025-12-18 09:47:06,190 | INFO     | cat /etc/os-release:
[2025-12-18 10:48:10] NAME="CentOS Linux"
[2025-12-18 10:48:10] VERSION="7 (Core)"
[2025-12-18 10:48:10] ID="centos"
[2025-12-18 10:48:10] ID_LIKE="rhel fedora"
[2025-12-18 10:48:10] VERSION_ID="7"
[2025-12-18 10:48:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 10:48:10] ANSI_COLOR="0;31"
[2025-12-18 10:48:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 10:48:10] HOME_URL="https://www.centos.org/"
[2025-12-18 10:48:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 10:48:10] 
[2025-12-18 10:48:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 10:48:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 10:48:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 10:48:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 10:48:10] 
[2025-12-18 10:48:10] 2025-12-18 09:47:06,190 | INFO     | ***************************************
[2025-12-18 10:48:10] 2025-12-18 09:47:06,694 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 10:48:10] 2025-12-18 09:47:06,706 | INFO     | sufficient remaining disk space (332554829824 B)
[2025-12-18 10:48:10] 2025-12-18 09:47:06,706 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 10:48:10] 2025-12-18 09:47:06,706 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 10:48:10] 2025-12-18 09:47:06,706 | INFO     | update_server=False
[2025-12-18 10:48:10] 2025-12-18 09:47:06,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 10:48:10] 2025-12-18 09:47:06,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 10:48:10] 2025-12-18 09:47:07,574 | INFO     | all data control threads have been joined
[2025-12-18 10:48:10] 2025-12-18 09:47:07,578 | INFO     | all payload control threads have been joined
[2025-12-18 10:48:10] 2025-12-18 09:47:07,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 10:48:10] 2025-12-18 09:47:07,597 | INFO     | aborting loop
[2025-12-18 10:48:10] 2025-12-18 09:47:07,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 10:48:10] 2025-12-18 09:47:07,682 | INFO     | all job control threads have been joined
[2025-12-18 10:48:10] 2025-12-18 09:47:07,712 | INFO     | [job] queue monitor thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:07,713 | INFO     | [job] retrieve thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:07,739 | INFO     | [payload] validate_post thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:07,777 | INFO     | [data] copytool_in thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,133 | INFO     | [job] validate thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,150 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,293 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,408 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,416 | INFO     | [payload] failed_post thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,580 | INFO     | [data] control thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,584 | INFO     | [payload] control thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,602 | INFO     | [job] job monitor thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:08,687 | INFO     | [job] control thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:09,671 | INFO     | [data] copytool_out thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:09,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 10:48:10] 2025-12-18 09:47:13,696 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:17,492 | INFO     | job.realtimelogging is not enabled
[2025-12-18 10:48:10] 2025-12-18 09:47:18,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 10:48:10] 2025-12-18 09:47:37,516 | INFO     | PID=1769516 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 10:48:10] 2025-12-18 09:47:37,516 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 10:48:10] 2025-12-18 09:47:37,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 10:48:10] 2025-12-18 09:47:37,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 10:48:10] 2025-12-18 09:48:04,038 | INFO     | [monitor] cgroup control has ended
[2025-12-18 10:48:10] 2025-12-18 09:48:04,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780957935424)>', '<ExcThread(monitor, started 139780104906496)>']
[2025-12-18 10:48:10] 2025-12-18 09:48:05,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 10:48:10] 2025-12-18 09:48:05,665 | INFO     | [monitor] control thread has ended
[2025-12-18 10:48:10] 2025-12-18 09:48:09,945 | INFO     | all workflow threads have been joined
[2025-12-18 10:48:10] 2025-12-18 09:48:09,946 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 10:48:10] 2025-12-18 09:48:09,947 | INFO     | traces error code: 0
[2025-12-18 10:48:10] 2025-12-18 09:48:09,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 10:48:10] 2025-12-18 09:48:09,992 [wrapper] ==== pilot stdout END ====
[2025-12-18 10:48:10] 2025-12-18 09:48:09,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 10:48:10] 2025-12-18 09:48:09,998 [wrapper] pilotpid: 1769516
[2025-12-18 10:48:10] 2025-12-18 09:48:10,000 [wrapper] Pilot exit status: 0
[2025-12-18 10:48:10] 2025-12-18 09:48:10,006 [wrapper] pandaids: 6932417714
[2025-12-18 10:48:10] 2025-12-18 09:48:10,021 [wrapper] cleanup supervisor_pilot 1794793 1769517
[2025-12-18 10:48:10] 2025-12-18 09:48:10,024 [wrapper] Test setup, not cleaning
[2025-12-18 10:48:10] 2025-12-18 09:48:10,026 [wrapper] apfmon messages muted
[2025-12-18 10:48:10] 2025-12-18 09:48:10,028 [wrapper] ==== wrapper stdout END ====
[2025-12-18 10:48:10] 2025-12-18 09:48:10,030 [wrapper] ==== wrapper stderr END ====
[2025-12-18 10:48:10]  *** Error codes and diagnostics ***
[2025-12-18 10:48:10]     "exeErrorCode": 0,
[2025-12-18 10:48:10]     "exeErrorDiag": "",
[2025-12-18 10:48:10]     "pilotErrorCode": 0,
[2025-12-18 10:48:10]     "pilotErrorDiag": "",
[2025-12-18 10:48:10]  *** Listing of results directory ***
[2025-12-18 10:48:10] total 409864
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc    579449 Dec 17 12:17 pilot3.tar.gz
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc      5112 Dec 17 12:19 queuedata.json
[2025-12-18 10:48:10] -rwx------ 1 boinc boinc     36322 Dec 17 12:20 runpilot2-wrapper.sh
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc       100 Dec 18 07:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 10:48:10] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 07:58 run_atlas
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc       105 Dec 18 07:58 job.xml
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc 216106934 Dec 18 07:58 EVNT.47898833._000156.pool.root.1
[2025-12-18 10:48:10] drwxrwx--x 2 boinc boinc      4096 Dec 18 07:58 shared
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc    592404 Dec 18 07:58 input.tar.gz
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc     15847 Dec 18 07:58 start_atlas.sh
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc         0 Dec 18 07:58 boinc_setup_complete
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc      6207 Dec 18 07:58 init_data.xml
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc         0 Dec 18 07:58 boinc_lockfile
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc      2553 Dec 18 07:58 pandaJob.out
[2025-12-18 10:48:10] -rw------- 1 boinc boinc    988110 Dec 18 07:58 agis_schedconf.cvmfs.json
[2025-12-18 10:48:10] -rw------- 1 boinc boinc   1516240 Dec 18 07:58 agis_ddmendpoints.agis.ALL.json
[2025-12-18 10:48:10] drwx------ 5 boinc boinc      4096 Dec 18 07:58 pilot3
[2025-12-18 10:48:10] -rw------- 1 boinc boinc 196203012 Dec 18 10:46 HITS.47898836._004018.pool.root.1
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc       531 Dec 18 10:46 boinc_task_state.xml
[2025-12-18 10:48:10] -rw------- 1 boinc boinc      1016 Dec 18 10:46 memory_monitor_summary.json
[2025-12-18 10:48:10] -rw------- 1 boinc boinc    304222 Dec 18 10:46 log.47898836._004018.job.log.tgz.1
[2025-12-18 10:48:10] -rw------- 1 boinc boinc      7754 Dec 18 10:47 heartbeat.json
[2025-12-18 10:48:10] -rw------- 1 boinc boinc        95 Dec 18 10:47 pilot_heartbeat.json
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc      8192 Dec 18 10:47 boinc_mmap_file
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc        28 Dec 18 10:47 wrapper_checkpoint.txt
[2025-12-18 10:48:10] -rw------- 1 boinc boinc      4824 Dec 18 10:48 pilotlog.txt
[2025-12-18 10:48:10] -rw------- 1 boinc boinc   1440692 Dec 18 10:48 log.47898836._004018.job.log.1
[2025-12-18 10:48:10] -rw------- 1 boinc boinc       357 Dec 18 10:48 output.list
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc       620 Dec 18 10:48 runtime_log
[2025-12-18 10:48:10] -rw------- 1 boinc boinc   1761280 Dec 18 10:48 result.tar.gz
[2025-12-18 10:48:10] -rw------- 1 boinc boinc       664 Dec 18 10:48 xnXMDmSl4p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXVXKDmc1gkmn.diag
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc      8913 Dec 18 10:48 runtime_log.err
[2025-12-18 10:48:10] -rw-r--r-- 1 boinc boinc     12031 Dec 18 10:48 stderr.txt
[2025-12-18 10:48:10] HITS file was successfully produced:
[2025-12-18 10:48:10] -rw------- 1 boinc boinc 196203012 Dec 18 10:46 shared/HITS.pool.root.1
[2025-12-18 10:48:10]  *** Contents of shared directory: ***
[2025-12-18 10:48:10] total 404976
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc 216106934 Dec 18 07:58 ATLAS.root_0
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc    592404 Dec 18 07:58 input.tar.gz
[2025-12-18 10:48:10] -rw-r--r-- 2 boinc boinc     15847 Dec 18 07:58 start_atlas.sh
[2025-12-18 10:48:10] -rw------- 1 boinc boinc 196203012 Dec 18 10:46 HITS.pool.root.1
[2025-12-18 10:48:10] -rw------- 1 boinc boinc   1761280 Dec 18 10:48 result.tar.gz
10:48:12 (1765808): run_atlas exited; CPU time 19754.412419
10:48:12 (1765808): called boinc_finish(0)

</stderr_txt>
]]>

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