Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:46:14 (1078078): wrapper (7.7.26015): starting
12:46:14 (1078078): wrapper: running run_atlas (--nthreads 10)
[2025-12-17 12:46:14] Arguments: --nthreads 10
[2025-12-17 12:46:14] Threads: 10
[2025-12-17 12:46:14] Checking for CVMFS
[2025-12-17 12:46:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 12:46:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 12:46:15] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 12:46:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 12:46:15] 2.13.3.0 14106 60559 189860 154118 0 726 26592204 40960001 36718 16776704 0 820395020 99.723 598933356 47020 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-17 12:46:15] CVMFS is ok
[2025-12-17 12:46:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 12:46:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 12:46:15] Further information can be found at the LHC@home message board.
[2025-12-17 12:46:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 12:46:15] Checking for apptainer binary...
[2025-12-17 12:46:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 12:46:15] Running /usr/bin/apptainer --version
[2025-12-17 12:46:16] apptainer version 1.4.5-2.el9
[2025-12-17 12:46:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 12:46:16] c8-7-5.aglt2.org
[2025-12-17 12:46:16] apptainer works
[2025-12-17 12:46:16] Set ATHENA_PROC_NUMBER=10
[2025-12-17 12:46:16] Set ATHENA_CORE_NUMBER=10
[2025-12-17 12:46:16] Starting ATLAS job with PandaID=6932342041
[2025-12-17 12:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 13:40:57]  *** The last 200 lines of the pilot log: ***
[2025-12-17 13:40:58] 2025-12-17 18:40:06,803 | INFO     | time since job start (3209s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:06,803 | INFO     | 3212s have passed since pilot start - server update state is 'RUNNING'
[2025-12-17 13:40:58] 2025-12-17 18:40:08,810 | INFO     | time since job start (3211s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:08,988 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 13:40:58] 2025-12-17 18:40:10,818 | INFO     | time since job start (3213s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:11,205 | WARNING  | process 1098459 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 13:40:58] 2025-12-17 18:40:11,205 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6932342041/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | job 6932342041 has state=finished
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | preparing for final server update for job 6932342041 in state='finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | this job has now completed (state=finished)
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | log transfer has been attempted: DONE
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | job 6932342041 has finished - writing final server update
[2025-12-17 13:40:58] 2025-12-17 18:40:11,283 | INFO     | total number of processed events: 400 (read)
[2025-12-17 13:40:58] 2025-12-17 18:40:11,284 | INFO     | executing command: lscpu
[2025-12-17 13:40:58] 2025-12-17 18:40:11,342 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 13:40:58] 2025-12-17 18:40:11,732 | INFO     | number of running child processes to parent process 1098459: 1
[2025-12-17 13:40:58] 2025-12-17 18:40:11,732 | INFO     | maximum number of monitored processes: 6
[2025-12-17 13:40:58] 2025-12-17 18:40:12,824 | INFO     | time since job start (3215s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:14,237 | INFO     | monitor loop #217: job 0:6932342041 is in state 'finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:14,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:58] 2025-12-17 18:40:14,829 | INFO     | time since job start (3217s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:16,573 | INFO     | PID=1085159 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 13:40:58] 2025-12-17 18:40:16,573 | INFO     | .. there are 41 such processes running
[2025-12-17 13:40:58] 2025-12-17 18:40:16,746 | INFO     | monitor loop #218: job 0:6932342041 is in state 'finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:16,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:58] 2025-12-17 18:40:17,574 | INFO     | time since job start (3220s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:19,252 | INFO     | monitor loop #219: job 0:6932342041 is in state 'finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:19,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:58] 2025-12-17 18:40:19,582 | INFO     | time since job start (3222s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:21,589 | INFO     | time since job start (3224s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:21,757 | INFO     | monitor loop #220: job 0:6932342041 is in state 'finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:21,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:58] 2025-12-17 18:40:23,596 | INFO     | time since job start (3226s) is within the limit (174528.0s)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,264 | INFO     | monitor loop #221: job 0:6932342041 is in state 'finished'
[2025-12-17 13:40:58] 2025-12-17 18:40:24,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,388 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 13:40:58] 2025-12-17 18:40:24,395 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9858828125007
[2025-12-17 13:40:58] 2025-12-17 18:40:24,409 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6932342041/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,410 | INFO     | extracted standard info from prmon json
[2025-12-17 13:40:58] 2025-12-17 18:40:24,410 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 13:40:58] 2025-12-17 18:40:24,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 13:40:58] 2025-12-17 18:40:24,410 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 13:40:58] 2025-12-17 18:40:24,410 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 13:40:58] 2025-12-17 18:40:24,411 | INFO     | fitting pss+swap vs Time
[2025-12-17 13:40:58] 2025-12-17 18:40:24,411 | INFO     | sum of square deviations: 28242390.0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,411 | INFO     | sum of deviations: -827362886.0000001
[2025-12-17 13:40:58] 2025-12-17 18:40:24,411 | INFO     | mean x: 1765995280.0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,411 | INFO     | mean y: 2601142.177777778
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | intersect: 51737562366.181076
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | chi2: 0.0023018341742673852
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | current memory leak: -29.30 B/s (using 45 data points, chi2=0.00)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | could have reported an average CPU frequency of 3799 MHz (5 samples)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | ..............................
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . Timing measurements:
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . get job = 0 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . initial setup = 2 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . payload setup = 8 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . stage-in = 0 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . payload execution = 3176 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . stage-out = 0 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | . log creation = 0 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,412 | INFO     | ..............................
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | 
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | job summary report
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | --------------------------------------------------
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | PanDA job id: 6932342041
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | task id: 47886933
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | errors: (none)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | pilot state: finished 
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | transexitcode: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | exeerrorcode: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | exeerrordiag: 
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | exitcode: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | exitmsg: OK
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | cpuconsumptiontime: 23165 s
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | nevents: 400
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | neventsw: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | pid: 1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | pgrp: 1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | corecount: 10
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | event service: False
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | sizes: {0: 2283966, 8: 2284228, 11: 2284256, 3189: 2309833, 3190: 2318831, 3193: 2318887, 3209: 2319241}
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | --------------------------------------------------
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | 
[2025-12-17 13:40:58] 2025-12-17 18:40:24,520 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-17 13:40:58] 2025-12-17 18:40:24,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 13:40:58] 2025-12-17 18:40:24,547 | INFO     | job 6932342041 has completed (purged errors)
[2025-12-17 13:40:58] 2025-12-17 18:40:24,548 | INFO     | overall cleanup function is called
[2025-12-17 13:40:58] 2025-12-17 18:40:25,555 | INFO     | --- collectZombieJob: --- 10, [1098459]
[2025-12-17 13:40:58] 2025-12-17 18:40:25,555 | INFO     | zombie collector waiting for pid 1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:25,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 13:40:58] 2025-12-17 18:40:25,555 | INFO     | collected zombie processes
[2025-12-17 13:40:58] 2025-12-17 18:40:25,555 | INFO     | will attempt to kill all subprocesses of pid=1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:26,137 | INFO     | process IDs to be killed: [1098459] (in reverse order)
[2025-12-17 13:40:58] 2025-12-17 18:40:26,324 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 13:40:58] 2025-12-17 18:40:26,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 13:40:58] 2025-12-17 18:40:26,358 | INFO     | did not find any defunct processes belonging to 1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:26,382 | INFO     | did not find any defunct processes belonging to 1098459
[2025-12-17 13:40:58] 2025-12-17 18:40:26,383 | INFO     | ready for new job
[2025-12-17 13:40:58] 2025-12-17 18:40:26,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 13:40:58] 2025-12-17 18:40:26,384 | INFO     | ***************************************
[2025-12-17 13:40:58] 2025-12-17 18:40:26,384 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 13:40:58] 2025-12-17 18:40:26,384 | INFO     | ***************************************
[2025-12-17 13:40:58] 2025-12-17 18:40:26,384 | INFO     | 
[2025-12-17 13:40:58] 2025-12-17 18:40:26,388 | INFO     | architecture information:
[2025-12-17 13:40:58] 2025-12-17 18:40:26,389 | INFO     | executing command: cat /etc/os-release
[2025-12-17 13:40:58] 2025-12-17 18:40:26,437 | INFO     | cat /etc/os-release:
[2025-12-17 13:40:58] NAME="CentOS Linux"
[2025-12-17 13:40:58] VERSION="7 (Core)"
[2025-12-17 13:40:58] ID="centos"
[2025-12-17 13:40:58] ID_LIKE="rhel fedora"
[2025-12-17 13:40:58] VERSION_ID="7"
[2025-12-17 13:40:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 13:40:58] ANSI_COLOR="0;31"
[2025-12-17 13:40:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 13:40:58] HOME_URL="https://www.centos.org/"
[2025-12-17 13:40:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 13:40:58] 
[2025-12-17 13:40:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 13:40:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 13:40:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 13:40:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 13:40:58] 
[2025-12-17 13:40:58] 2025-12-17 18:40:26,437 | INFO     | ***************************************
[2025-12-17 13:40:58] 2025-12-17 18:40:26,941 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | INFO     | sufficient remaining disk space (171178983424 B)
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | INFO     | update_server=False
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 13:40:58] 2025-12-17 18:40:26,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 13:40:58] 2025-12-17 18:40:27,402 | INFO     | all data control threads have been joined
[2025-12-17 13:40:58] 2025-12-17 18:40:27,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:40:58] 2025-12-17 18:40:27,775 | INFO     | aborting loop
[2025-12-17 13:40:58] 2025-12-17 18:40:27,980 | INFO     | [job] retrieve thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,039 | INFO     | [payload] failed_post thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,245 | INFO     | all payload control threads have been joined
[2025-12-17 13:40:58] 2025-12-17 18:40:28,317 | INFO     | all job control threads have been joined
[2025-12-17 13:40:58] 2025-12-17 18:40:28,394 | INFO     | [payload] validate_post thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,408 | INFO     | [data] control thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,422 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 13:40:58] 2025-12-17 18:40:28,624 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,670 | INFO     | [job] validate thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,781 | INFO     | [job] job monitor thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,816 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:28,981 | INFO     | [data] copytool_out thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:29,218 | INFO     | [data] copytool_in thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:29,253 | INFO     | [payload] control thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:29,322 | INFO     | [job] control thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:29,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:40:58] 2025-12-17 18:40:30,483 | INFO     | [job] queue monitor thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:32,604 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:37,744 | INFO     | job.realtimelogging is not enabled
[2025-12-17 13:40:58] 2025-12-17 18:40:38,750 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 13:40:58] 2025-12-17 18:40:42,347 | INFO     | [monitor] cgroup control has ended
[2025-12-17 13:40:58] 2025-12-17 18:40:43,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919515498304)>', '<ExcThread(monitor, started 139918877644544)>']
[2025-12-17 13:40:58] 2025-12-17 18:40:48,751 | INFO     | all workflow threads have been joined
[2025-12-17 13:40:58] 2025-12-17 18:40:48,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 13:40:58] 2025-12-17 18:40:48,751 | INFO     | traces error code: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:48,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 13:40:58] 2025-12-17 18:40:57,344 | INFO     | PID=1085159 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 13:40:58] 2025-12-17 18:40:57,344 | INFO     | .. there are 41 such processes running
[2025-12-17 13:40:58] 2025-12-17 18:40:57,344 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 13:40:58] 2025-12-17 18:40:57,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 13:40:58] 2025-12-17 18:40:57,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 13:40:58] 2025-12-17 18:40:57,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 13:40:58] 2025-12-17 18:40:57,345 | CRITICAL | thread 'MainThread' is not alive
[2025-12-17 13:40:58] 2025-12-17 18:40:57,345 | INFO     | [monitor] control thread has ended
[2025-12-17 13:40:58] 2025-12-17 18:40:57,493 [wrapper] ==== pilot stdout END ====
[2025-12-17 13:40:58] 2025-12-17 18:40:57,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 13:40:58] 2025-12-17 18:40:57,496 [wrapper] pilotpid: 1085159
[2025-12-17 13:40:58] 2025-12-17 18:40:57,497 [wrapper] Pilot exit status: 0
[2025-12-17 13:40:58] 2025-12-17 18:40:57,515 [wrapper] pandaids: 6932342041
[2025-12-17 13:40:58] 2025-12-17 18:40:57,631 [wrapper] cleanup supervisor_pilot 1503236 1085160
[2025-12-17 13:40:58] 2025-12-17 18:40:57,642 [wrapper] Test setup, not cleaning
[2025-12-17 13:40:58] 2025-12-17 18:40:57,644 [wrapper] apfmon messages muted
[2025-12-17 13:40:58] 2025-12-17 18:40:57,652 [wrapper] ==== wrapper stdout END ====
[2025-12-17 13:40:58] 2025-12-17 18:40:57,665 [wrapper] ==== wrapper stderr END ====
[2025-12-17 13:40:58]  *** Error codes and diagnostics ***
[2025-12-17 13:40:58]     "exeErrorCode": 0,
[2025-12-17 13:40:58]     "exeErrorDiag": "",
[2025-12-17 13:40:58]     "pilotErrorCode": 0,
[2025-12-17 13:40:58]     "pilotErrorDiag": "",
[2025-12-17 13:40:58]  *** Listing of results directory ***
[2025-12-17 13:40:58] total 335320
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas    579449 Dec 17 06:17 pilot3.tar.gz
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas      5112 Dec 17 06:19 queuedata.json
[2025-12-17 13:40:58] -rwx------. 1 boincer umatlas     36322 Dec 17 06:20 runpilot2-wrapper.sh
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas       100 Dec 17 12:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 13:40:58] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 17 12:46 run_atlas
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas       105 Dec 17 12:46 job.xml
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas 189926200 Dec 17 12:46 EVNT.47886929._000374.pool.root.1
[2025-12-17 13:40:58] drwxrwx--x. 2 boincer umatlas      4096 Dec 17 12:46 shared
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas    592403 Dec 17 12:46 input.tar.gz
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 12:46 start_atlas.sh
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas         0 Dec 17 12:46 boinc_lockfile
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas      2514 Dec 17 12:46 pandaJob.out
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas        57 Dec 17 12:46 setup.sh.local
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas    987424 Dec 17 12:46 agis_schedconf.cvmfs.json
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas   1516240 Dec 17 12:46 agis_ddmendpoints.agis.ALL.json
[2025-12-17 13:40:58] drwx------. 5 boincer umatlas      4096 Dec 17 12:46 pilot3
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas      7172 Dec 17 13:36 init_data.xml
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas 147910340 Dec 17 13:39 HITS.47886933._009211.pool.root.1
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas       529 Dec 17 13:39 boinc_task_state.xml
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas      1045 Dec 17 13:40 memory_monitor_summary.json
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas    336796 Dec 17 13:40 log.47886933._009211.job.log.tgz.1
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas      7793 Dec 17 13:40 heartbeat.json
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas      8192 Dec 17 13:40 boinc_mmap_file
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas        27 Dec 17 13:40 wrapper_checkpoint.txt
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas        95 Dec 17 13:40 pilot_heartbeat.json
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas       893 Dec 17 13:40 pilotlog.txt
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas    475081 Dec 17 13:40 log.47886933._009211.job.log.1
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas       357 Dec 17 13:40 output.list
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas       620 Dec 17 13:40 runtime_log
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas    829440 Dec 17 13:40 result.tar.gz
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas      9334 Dec 17 13:40 runtime_log.err
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas       655 Dec 17 13:40 7NQNDmRl4p8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmy1bKDmrRHHam.diag
[2025-12-17 13:40:58] -rw-r--r--. 1 boincer umatlas     22292 Dec 17 13:40 stderr.txt
[2025-12-17 13:40:58] HITS file was successfully produced:
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas 147910340 Dec 17 13:39 shared/HITS.pool.root.1
[2025-12-17 13:40:58]  *** Contents of shared directory: ***
[2025-12-17 13:40:58] total 331332
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas 189926200 Dec 17 12:46 ATLAS.root_0
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas    592403 Dec 17 12:46 input.tar.gz
[2025-12-17 13:40:58] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 12:46 start_atlas.sh
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas 147910340 Dec 17 13:39 HITS.pool.root.1
[2025-12-17 13:40:58] -rw-------. 1 boincer umatlas    829440 Dec 17 13:40 result.tar.gz
13:41:00 (1078078): run_atlas exited; CPU time 23265.968317
13:41:00 (1078078): called boinc_finish(0)

</stderr_txt>
]]>

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