Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:01:24 (2147422): wrapper (7.7.26015): starting
04:01:24 (2147422): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 04:01:24] Arguments: --nthreads 3
[2025-12-18 04:01:24] Threads: 3
[2025-12-18 04:01:24] Checking for CVMFS
[2025-12-18 04:01:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 04:01:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 04:01:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 04:01:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 04:01:24] 2.9.2.0 415797 6523 81660 154130 2 56 20709099 36864000 0 130560 0 4493387 99.990 229237 16782 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 04:01:24] CVMFS is ok
[2025-12-18 04:01:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 04:01:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 04:01:24] Further information can be found at the LHC@home message board.
[2025-12-18 04:01:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 04:01:24] Checking for apptainer binary...
[2025-12-18 04:01:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 04:01:24] Running /usr/bin/apptainer --version
[2025-12-18 04:01:24] apptainer version 1.4.1-1.1
[2025-12-18 04:01:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 04:01:24] magicA246a
[2025-12-18 04:01:24] apptainer works
[2025-12-18 04:01:24] Set ATHENA_PROC_NUMBER=3
[2025-12-18 04:01:24] Set ATHENA_CORE_NUMBER=3
[2025-12-18 04:01:24] Starting ATLAS job with PandaID=6932080555
[2025-12-18 04:01:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 06:18:55]  *** The last 200 lines of the pilot log: ***
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | job 6932080555 has completed (purged errors)
[2025-12-18 06:18:55] 2025-12-18 05:18:23,728 | INFO     | overall cleanup function is called
[2025-12-18 06:18:55] 2025-12-18 05:18:24,735 | INFO     | --- collectZombieJob: --- 10, [2157583]
[2025-12-18 06:18:55] 2025-12-18 05:18:24,735 | INFO     | zombie collector waiting for pid 2157583
[2025-12-18 06:18:55] 2025-12-18 05:18:24,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 06:18:55] 2025-12-18 05:18:24,735 | INFO     | collected zombie processes
[2025-12-18 06:18:55] 2025-12-18 05:18:24,735 | INFO     | will attempt to kill all subprocesses of pid=2157583
[2025-12-18 06:18:55] 2025-12-18 05:18:24,781 | INFO     | process IDs to be killed: [2157583] (in reverse order)
[2025-12-18 06:18:55] 2025-12-18 05:18:24,805 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 06:18:55] 2025-12-18 05:18:24,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 06:18:55] 2025-12-18 05:18:24,807 | INFO     | did not find any defunct processes belonging to 2157583
[2025-12-18 06:18:55] 2025-12-18 05:18:24,808 | INFO     | did not find any defunct processes belonging to 2157583
[2025-12-18 06:18:55] 2025-12-18 05:18:24,808 | INFO     | ready for new job
[2025-12-18 06:18:55] 2025-12-18 05:18:24,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | ***************************************
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | ***************************************
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | 
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | architecture information:
[2025-12-18 06:18:55] 2025-12-18 05:18:24,809 | INFO     | executing command: cat /etc/os-release
[2025-12-18 06:18:55] 2025-12-18 05:18:24,818 | INFO     | cat /etc/os-release:
[2025-12-18 06:18:55] NAME="CentOS Linux"
[2025-12-18 06:18:55] VERSION="7 (Core)"
[2025-12-18 06:18:55] ID="centos"
[2025-12-18 06:18:55] ID_LIKE="rhel fedora"
[2025-12-18 06:18:55] VERSION_ID="7"
[2025-12-18 06:18:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 06:18:55] ANSI_COLOR="0;31"
[2025-12-18 06:18:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 06:18:55] HOME_URL="https://www.centos.org/"
[2025-12-18 06:18:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 06:18:55] 
[2025-12-18 06:18:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 06:18:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 06:18:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 06:18:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 06:18:55] 
[2025-12-18 06:18:55] 2025-12-18 05:18:24,818 | INFO     | ***************************************
[2025-12-18 06:18:55] 2025-12-18 05:18:25,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | INFO     | sufficient remaining disk space (283766685696 B)
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | INFO     | update_server=False
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 06:18:55] 2025-12-18 05:18:25,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 06:18:55] 2025-12-18 05:18:25,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 06:18:55] 2025-12-18 05:18:25,335 | INFO     | aborting loop
[2025-12-18 06:18:55] 2025-12-18 05:18:26,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 06:18:55] 2025-12-18 05:18:26,231 | INFO     | all job control threads have been joined
[2025-12-18 06:18:55] 2025-12-18 05:18:26,340 | INFO     | [job] retrieve thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:26,340 | INFO     | [job] queue monitor thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:26,340 | INFO     | [job] job monitor thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:26,432 | INFO     | all data control threads have been joined
[2025-12-18 06:18:55] 2025-12-18 05:18:26,492 | INFO     | all payload control threads have been joined
[2025-12-18 06:18:55] 2025-12-18 05:18:26,844 | INFO     | [payload] failed_post thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,223 | INFO     | [data] copytool_in thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,236 | INFO     | [job] control thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 06:18:55] 2025-12-18 05:18:27,368 | INFO     | [payload] validate_post thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,438 | INFO     | [data] control thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,498 | INFO     | [payload] control thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,653 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,717 | INFO     | [job] validate thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,744 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:27,746 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:28,164 | INFO     | [data] copytool_out thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:31,290 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:35,645 | INFO     | job.realtimelogging is not enabled
[2025-12-18 06:18:55] 2025-12-18 05:18:36,651 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 06:18:55] 2025-12-18 05:18:40,240 | INFO     | [monitor] cgroup control has ended
[2025-12-18 06:18:55] 2025-12-18 05:18:40,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692312430400)>', '<ExcThread(monitor, started 140691963365120)>']
[2025-12-18 06:18:55] 2025-12-18 05:18:45,906 | INFO     | all workflow threads have been joined
[2025-12-18 06:18:55] 2025-12-18 05:18:45,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 06:18:55] 2025-12-18 05:18:45,906 | INFO     | traces error code: 0
[2025-12-18 06:18:55] 2025-12-18 05:18:45,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | INFO     | PID=2151142 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 06:18:55] 2025-12-18 05:18:55,211 | INFO     | [monitor] control thread has ended
[2025-12-18 06:18:55] 2025-12-18 05:18:55,260 [wrapper] ==== pilot stdout END ====
[2025-12-18 06:18:55] 2025-12-18 05:18:55,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 06:18:55] 2025-12-18 05:18:55,264 [wrapper] pilotpid: 2151142
[2025-12-18 06:18:55] 2025-12-18 05:18:55,266 [wrapper] Pilot exit status: 0
[2025-12-18 06:18:55] 2025-12-18 05:18:55,273 [wrapper] pandaids: 6932080555
[2025-12-18 06:18:55] 2025-12-18 05:18:55,290 [wrapper] cleanup supervisor_pilot 2175073 2151143
[2025-12-18 06:18:55] 2025-12-18 05:18:55,292 [wrapper] Test setup, not cleaning
[2025-12-18 06:18:55] 2025-12-18 05:18:55,294 [wrapper] apfmon messages muted
[2025-12-18 06:18:55] 2025-12-18 05:18:55,296 [wrapper] ==== wrapper stdout END ====
[2025-12-18 06:18:55] 2025-12-18 05:18:55,299 [wrapper] ==== wrapper stderr END ====
[2025-12-18 06:18:55]  *** Error codes and diagnostics ***
[2025-12-18 06:18:55]     "exeErrorCode": 0,
[2025-12-18 06:18:55]     "exeErrorDiag": "",
[2025-12-18 06:18:55]     "pilotErrorCode": 0,
[2025-12-18 06:18:55]     "pilotErrorDiag": "",
[2025-12-18 06:18:55]  *** Listing of results directory ***
[2025-12-18 06:18:55] total 642764
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc    579449 Dec 17 04:48 pilot3.tar.gz
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc      5112 Dec 17 04:50 queuedata.json
[2025-12-18 06:18:55] -rwx------ 1 boinc boinc     36322 Dec 17 04:52 runpilot2-wrapper.sh
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc       100 Dec 18 04:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 06:18:55] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 04:01 run_atlas
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc       105 Dec 18 04:01 job.xml
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc 338257799 Dec 18 04:01 EVNT.47928818._000001.pool.root.1
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc    592394 Dec 18 04:01 input.tar.gz
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc     15847 Dec 18 04:01 start_atlas.sh
[2025-12-18 06:18:55] drwxrwx--x 2 boinc boinc      4096 Dec 18 04:01 shared
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc         0 Dec 18 04:01 boinc_setup_complete
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc      6447 Dec 18 04:01 init_data.xml
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc         0 Dec 18 04:01 boinc_lockfile
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc      2561 Dec 18 04:01 pandaJob.out
[2025-12-18 06:18:55] -rw------- 1 boinc boinc    988110 Dec 18 04:01 agis_schedconf.cvmfs.json
[2025-12-18 06:18:55] -rw------- 1 boinc boinc   1516240 Dec 18 04:01 agis_ddmendpoints.agis.ALL.json
[2025-12-18 06:18:55] drwx------ 5 boinc boinc      4096 Dec 18 04:01 pilot3
[2025-12-18 06:18:55] -rw------- 1 boinc boinc 313061938 Dec 18 06:17 HITS.47928820._000014.pool.root.1
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc       529 Dec 18 06:18 boinc_task_state.xml
[2025-12-18 06:18:55] -rw------- 1 boinc boinc        95 Dec 18 06:18 pilot_heartbeat.json
[2025-12-18 06:18:55] -rw------- 1 boinc boinc      1016 Dec 18 06:18 memory_monitor_summary.json
[2025-12-18 06:18:55] -rw------- 1 boinc boinc    303226 Dec 18 06:18 log.47928820._000014.job.log.tgz.1
[2025-12-18 06:18:55] -rw------- 1 boinc boinc      7738 Dec 18 06:18 heartbeat.json
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc      8192 Dec 18 06:18 boinc_mmap_file
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc        27 Dec 18 06:18 wrapper_checkpoint.txt
[2025-12-18 06:18:55] -rw------- 1 boinc boinc       747 Dec 18 06:18 pilotlog.txt
[2025-12-18 06:18:55] -rw------- 1 boinc boinc   1179149 Dec 18 06:18 log.47928820._000014.job.log.1
[2025-12-18 06:18:55] -rw------- 1 boinc boinc       357 Dec 18 06:18 output.list
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc       620 Dec 18 06:18 runtime_log
[2025-12-18 06:18:55] -rw------- 1 boinc boinc   1505280 Dec 18 06:18 result.tar.gz
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc      8917 Dec 18 06:18 runtime_log.err
[2025-12-18 06:18:55] -rw------- 1 boinc boinc       663 Dec 18 06:18 lW4MDmJlxp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAvWKDmEcZ7pn.diag
[2025-12-18 06:18:55] -rw-r--r-- 1 boinc boinc     11311 Dec 18 06:18 stderr.txt
[2025-12-18 06:18:55] HITS file was successfully produced:
[2025-12-18 06:18:55] -rw------- 1 boinc boinc 313061938 Dec 18 06:17 shared/HITS.pool.root.1
[2025-12-18 06:18:55]  *** Contents of shared directory: ***
[2025-12-18 06:18:55] total 638136
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc 338257799 Dec 18 04:01 ATLAS.root_0
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc    592394 Dec 18 04:01 input.tar.gz
[2025-12-18 06:18:55] -rw-r--r-- 2 boinc boinc     15847 Dec 18 04:01 start_atlas.sh
[2025-12-18 06:18:55] -rw------- 1 boinc boinc 313061938 Dec 18 06:17 HITS.pool.root.1
[2025-12-18 06:18:55] -rw------- 1 boinc boinc   1505280 Dec 18 06:18 result.tar.gz
06:18:56 (2147422): run_atlas exited; CPU time 23851.190415
06:18:56 (2147422): called boinc_finish(0)

</stderr_txt>
]]>

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