Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:57:30 (1391): wrapper (7.7.26015): starting
10:57:30 (1391): wrapper: running run_atlas (--nthreads 8)
[2025-12-17 10:57:30] Arguments: --nthreads 8
[2025-12-17 10:57:30] Threads: 8
[2025-12-17 10:57:30] Checking for CVMFS
[2025-12-17 10:57:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 10:57:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 10:57:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 10:57:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 10:57:31] 2.11.2.0 3733 148149 147556 154112 0 188 13632535 18432000 1833 130560 0 110682760 99.978 6019703 32318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 10:57:31] CVMFS is ok
[2025-12-17 10:57:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 10:57:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 10:57:31] Further information can be found at the LHC@home message board.
[2025-12-17 10:57:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 10:57:31] Checking for apptainer binary...
[2025-12-17 10:57:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 10:57:31] Running /usr/bin/apptainer --version
[2025-12-17 10:57:31] apptainer version 1.3.2-1.el7
[2025-12-17 10:57:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 10:57:31] c-206-23.aglt2.org
[2025-12-17 10:57:31] apptainer works
[2025-12-17 10:57:31] Set ATHENA_PROC_NUMBER=8
[2025-12-17 10:57:31] Set ATHENA_CORE_NUMBER=8
[2025-12-17 10:57:31] Starting ATLAS job with PandaID=6932079861
[2025-12-17 10:57:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 15:12:31]  *** The last 200 lines of the pilot log: ***
[2025-12-17 15:12:31] 2025-12-17 20:11:55,563 | INFO     | job 6932079861 has finished - writing final server update
[2025-12-17 15:12:31] 2025-12-17 20:11:55,564 | INFO     | total number of processed events: 400 (read)
[2025-12-17 15:12:31] 2025-12-17 20:11:55,564 | INFO     | executing command: lscpu
[2025-12-17 15:12:31] 2025-12-17 20:11:55,594 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 15:12:31] 2025-12-17 20:11:56,026 | INFO     | time since job start (15254s) is within the limit (174528.0s)
[2025-12-17 15:12:31] 2025-12-17 20:11:56,917 | INFO     | monitor loop #1094: job 0:6932079861 is in state 'finished'
[2025-12-17 15:12:31] 2025-12-17 20:11:56,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,032 | INFO     | time since job start (15256s) is within the limit (174528.0s)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,764 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-17 15:12:31] 2025-12-17 20:11:58,768 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2372.5416666666665
[2025-12-17 15:12:31] 2025-12-17 20:11:58,771 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6932079861/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,771 | INFO     | extracted standard info from prmon json
[2025-12-17 15:12:31] 2025-12-17 20:11:58,772 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 15:12:31] 2025-12-17 20:11:58,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 15:12:31] 2025-12-17 20:11:58,772 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 15:12:31] 2025-12-17 20:11:58,772 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 15:12:31] 2025-12-17 20:11:58,776 | INFO     | fitting pss+swap vs Time
[2025-12-17 15:12:31] 2025-12-17 20:11:58,776 | INFO     | sum of square deviations: 4844974562.5
[2025-12-17 15:12:31] 2025-12-17 20:11:58,777 | INFO     | sum of deviations: 9835534835.999998
[2025-12-17 15:12:31] 2025-12-17 20:11:58,778 | INFO     | mean x: 1765994679.5
[2025-12-17 15:12:31] 2025-12-17 20:11:58,778 | INFO     | mean y: 2510453.176
[2025-12-17 15:12:31] 2025-12-17 20:11:58,778 | INFO     | intersect: -3582544941.0984054
[2025-12-17 15:12:31] 2025-12-17 20:11:58,778 | INFO     | chi2: 1.2695651754296449
[2025-12-17 15:12:31] 2025-12-17 20:11:58,778 | INFO     | sum of square deviations: 4560048290.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,780 | INFO     | sum of deviations: 9517072441.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,780 | INFO     | mean x: 1765994527.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,780 | INFO     | mean y: 2510283.355102041
[2025-12-17 15:12:31] 2025-12-17 20:11:58,780 | INFO     | intersect: -3683217756.1320696
[2025-12-17 15:12:31] 2025-12-17 20:11:58,780 | INFO     | chi2: 1.2697896469758734
[2025-12-17 15:12:31] 2025-12-17 20:11:58,781 | INFO     | current chi2=1.2697896469758734 (change=-0.01768097854074686 %)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,781 | INFO     | right removable region: 244
[2025-12-17 15:12:31] 2025-12-17 20:11:58,781 | INFO     | sum of square deviations: 4560048290.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,782 | INFO     | sum of deviations: -24637670456.999992
[2025-12-17 15:12:31] 2025-12-17 20:11:58,782 | INFO     | mean x: 1765994832.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,783 | INFO     | mean y: 2528741.4530612244
[2025-12-17 15:12:31] 2025-12-17 20:11:58,783 | INFO     | intersect: 9544094078.600197
[2025-12-17 15:12:31] 2025-12-17 20:11:58,783 | INFO     | chi2: 0.028682699763245462
[2025-12-17 15:12:31] 2025-12-17 20:11:58,783 | INFO     | current chi2=0.028682699763245462 (change=97.74074617685234 %)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,783 | INFO     | sum of square deviations: 4286517580.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,785 | INFO     | sum of deviations: -25594740052.5
[2025-12-17 15:12:31] 2025-12-17 20:11:58,785 | INFO     | mean x: 1765994984.5
[2025-12-17 15:12:31] 2025-12-17 20:11:58,785 | INFO     | mean y: 2529270.3125
[2025-12-17 15:12:31] 2025-12-17 20:11:58,785 | INFO     | intersect: 10547262079.339325
[2025-12-17 15:12:31] 2025-12-17 20:11:58,785 | INFO     | chi2: 0.02488241193293223
[2025-12-17 15:12:31] 2025-12-17 20:11:58,786 | INFO     | current chi2=0.02488241193293223 (change=13.249407697607982 %)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,786 | INFO     | left removable region: 20
[2025-12-17 15:12:31] 2025-12-17 20:11:58,786 | INFO     | sum of square deviations: 3485088600.0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,787 | INFO     | sum of deviations: -23273049705.000004
[2025-12-17 15:12:31] 2025-12-17 20:11:58,787 | INFO     | mean x: 1765995106.5
[2025-12-17 15:12:31] 2025-12-17 20:11:58,788 | INFO     | mean y: 2528385.3928571427
[2025-12-17 15:12:31] 2025-12-17 20:11:58,788 | INFO     | intersect: 11795655220.779846
[2025-12-17 15:12:31] 2025-12-17 20:11:58,788 | INFO     | chi2: 0.02299656828636505
[2025-12-17 15:12:31] 2025-12-17 20:11:58,788 | INFO     | current memory leak: -6.68 B/s (using 224 data points, chi2=0.02)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,788 | INFO     | could have reported an average CPU frequency of 2494 MHz (12 samples)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | ..............................
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . Timing measurements:
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . get job = 0 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . initial setup = 2 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . payload setup = 4 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . stage-in = 0 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . payload execution = 15226 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . stage-out = 2 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,789 | INFO     | . log creation = 0 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,790 | INFO     | ..............................
[2025-12-17 15:12:31] 2025-12-17 20:11:58,973 | INFO     | 
[2025-12-17 15:12:31] 2025-12-17 20:11:58,973 | INFO     | job summary report
[2025-12-17 15:12:31] 2025-12-17 20:11:58,973 | INFO     | --------------------------------------------------
[2025-12-17 15:12:31] 2025-12-17 20:11:58,973 | INFO     | PanDA job id: 6932079861
[2025-12-17 15:12:31] 2025-12-17 20:11:58,973 | INFO     | task id: 47905890
[2025-12-17 15:12:31] 2025-12-17 20:11:58,974 | INFO     | errors: (none)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 15:12:31] 2025-12-17 20:11:58,974 | INFO     | pilot state: finished 
[2025-12-17 15:12:31] 2025-12-17 20:11:58,974 | INFO     | transexitcode: 0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,974 | INFO     | exeerrorcode: 0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | exeerrordiag: 
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | exitcode: 0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | exitmsg: OK
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | cpuconsumptiontime: 117136 s
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | nevents: 400
[2025-12-17 15:12:31] 2025-12-17 20:11:58,975 | INFO     | neventsw: 0
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | pid: 11979
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | pgrp: 11979
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | corecount: 8
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | event service: False
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | sizes: {0: 2283870, 3: 2284132, 11: 2284160, 15234: 2315217, 15237: 2324215, 15238: 2324271, 15243: 2324621}
[2025-12-17 15:12:31] 2025-12-17 20:11:58,976 | INFO     | --------------------------------------------------
[2025-12-17 15:12:31] 2025-12-17 20:11:58,977 | INFO     | 
[2025-12-17 15:12:31] 2025-12-17 20:11:58,977 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-17 15:12:31] 2025-12-17 20:11:58,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 15:12:31] 2025-12-17 20:11:58,997 | INFO     | job 6932079861 has completed (purged errors)
[2025-12-17 15:12:31] 2025-12-17 20:11:58,998 | INFO     | overall cleanup function is called
[2025-12-17 15:12:31] 2025-12-17 20:12:00,002 | INFO     | --- collectZombieJob: --- 10, [11979]
[2025-12-17 15:12:31] 2025-12-17 20:12:00,003 | INFO     | zombie collector waiting for pid 11979
[2025-12-17 15:12:31] 2025-12-17 20:12:00,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 15:12:31] 2025-12-17 20:12:00,003 | INFO     | collected zombie processes
[2025-12-17 15:12:31] 2025-12-17 20:12:00,003 | INFO     | will attempt to kill all subprocesses of pid=11979
[2025-12-17 15:12:31] 2025-12-17 20:12:00,143 | INFO     | process IDs to be killed: [11979] (in reverse order)
[2025-12-17 15:12:31] 2025-12-17 20:12:00,198 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 15:12:31] 2025-12-17 20:12:00,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 15:12:31] 2025-12-17 20:12:00,204 | INFO     | did not find any defunct processes belonging to 11979
[2025-12-17 15:12:31] 2025-12-17 20:12:00,208 | INFO     | did not find any defunct processes belonging to 11979
[2025-12-17 15:12:31] 2025-12-17 20:12:00,209 | INFO     | ready for new job
[2025-12-17 15:12:31] 2025-12-17 20:12:00,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 15:12:31] 2025-12-17 20:12:00,211 | INFO     | ***************************************
[2025-12-17 15:12:31] 2025-12-17 20:12:00,211 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 15:12:31] 2025-12-17 20:12:00,212 | INFO     | ***************************************
[2025-12-17 15:12:31] 2025-12-17 20:12:00,212 | INFO     | 
[2025-12-17 15:12:31] 2025-12-17 20:12:00,213 | INFO     | architecture information:
[2025-12-17 15:12:31] 2025-12-17 20:12:00,213 | INFO     | executing command: cat /etc/os-release
[2025-12-17 15:12:31] 2025-12-17 20:12:00,228 | INFO     | cat /etc/os-release:
[2025-12-17 15:12:31] NAME="CentOS Linux"
[2025-12-17 15:12:31] VERSION="7 (Core)"
[2025-12-17 15:12:31] ID="centos"
[2025-12-17 15:12:31] ID_LIKE="rhel fedora"
[2025-12-17 15:12:31] VERSION_ID="7"
[2025-12-17 15:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 15:12:31] ANSI_COLOR="0;31"
[2025-12-17 15:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 15:12:31] HOME_URL="https://www.centos.org/"
[2025-12-17 15:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 15:12:31] 
[2025-12-17 15:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 15:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 15:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 15:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 15:12:31] 
[2025-12-17 15:12:31] 2025-12-17 20:12:00,228 | INFO     | ***************************************
[2025-12-17 15:12:31] 2025-12-17 20:12:00,732 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-17 15:12:31] 2025-12-17 20:12:00,750 | INFO     | sufficient remaining disk space (28211937280 B)
[2025-12-17 15:12:31] 2025-12-17 20:12:00,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 15:12:31] 2025-12-17 20:12:00,750 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 15:12:31] 2025-12-17 20:12:00,750 | INFO     | update_server=False
[2025-12-17 15:12:31] 2025-12-17 20:12:00,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 15:12:31] 2025-12-17 20:12:00,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:12:31] 2025-12-17 20:12:00,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:12:31] 2025-12-17 20:12:00,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 15:12:31] 2025-12-17 20:12:00,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 15:12:31] 2025-12-17 20:12:00,752 | INFO     | aborting loop
[2025-12-17 15:12:31] 2025-12-17 20:12:00,881 | INFO     | all payload control threads have been joined
[2025-12-17 15:12:31] 2025-12-17 20:12:01,146 | INFO     | all job control threads have been joined
[2025-12-17 15:12:31] 2025-12-17 20:12:01,675 | INFO     | all data control threads have been joined
[2025-12-17 15:12:31] 2025-12-17 20:12:01,756 | INFO     | [job] retrieve thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:01,756 | INFO     | [job] queue monitor thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:01,757 | INFO     | [job] job monitor thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:01,788 | INFO     | [job] validate thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:01,789 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:01,888 | INFO     | [payload] control thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,152 | INFO     | [job] control thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,204 | INFO     | [data] copytool_in thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,397 | INFO     | [payload] validate_post thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,476 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,682 | INFO     | [data] control thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,757 | INFO     | [data] copytool_out thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:02,902 | INFO     | [payload] failed_post thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:03,111 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:04,757 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:06,573 | INFO     | [monitor] cgroup control has ended
[2025-12-17 15:12:31] 2025-12-17 20:12:11,755 | INFO     | job.realtimelogging is not enabled
[2025-12-17 15:12:31] 2025-12-17 20:12:12,757 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 15:12:31] 2025-12-17 20:12:14,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181227943744)>', '<ExcThread(monitor, started 140180778362624)>']
[2025-12-17 15:12:31] 2025-12-17 20:12:19,711 | INFO     | all workflow threads have been joined
[2025-12-17 15:12:31] 2025-12-17 20:12:19,712 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 15:12:31] 2025-12-17 20:12:19,712 | INFO     | traces error code: 0
[2025-12-17 15:12:31] 2025-12-17 20:12:19,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 15:12:31] 2025-12-17 20:12:31,251 | INFO     | PID=5573 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 15:12:31] 2025-12-17 20:12:31,252 | INFO     | .. there are 3 such processes running
[2025-12-17 15:12:31] 2025-12-17 20:12:31,252 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 15:12:31] 2025-12-17 20:12:31,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 15:12:31] 2025-12-17 20:12:31,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 15:12:31] 2025-12-17 20:12:31,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 15:12:31] 2025-12-17 20:12:31,253 | INFO     | [monitor] control thread has ended
[2025-12-17 15:12:31] 2025-12-17 20:12:31,387 [wrapper] ==== pilot stdout END ====
[2025-12-17 15:12:31] 2025-12-17 20:12:31,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 15:12:31] 2025-12-17 20:12:31,392 [wrapper] pilotpid: 5573
[2025-12-17 15:12:31] 2025-12-17 20:12:31,395 [wrapper] Pilot exit status: 0
[2025-12-17 15:12:31] 2025-12-17 20:12:31,404 [wrapper] pandaids: 6932079861
[2025-12-17 15:12:31] 2025-12-17 20:12:31,444 [wrapper] cleanup supervisor_pilot 24670 5574
[2025-12-17 15:12:31] 2025-12-17 20:12:31,446 [wrapper] Test setup, not cleaning
[2025-12-17 15:12:31] 2025-12-17 20:12:31,449 [wrapper] apfmon messages muted
[2025-12-17 15:12:31] 2025-12-17 20:12:31,451 [wrapper] ==== wrapper stdout END ====
[2025-12-17 15:12:31] 2025-12-17 20:12:31,454 [wrapper] ==== wrapper stderr END ====
[2025-12-17 15:12:31]  *** Error codes and diagnostics ***
[2025-12-17 15:12:31]     "exeErrorCode": 0,
[2025-12-17 15:12:31]     "exeErrorDiag": "",
[2025-12-17 15:12:31]     "pilotErrorCode": 0,
[2025-12-17 15:12:31]     "pilotErrorDiag": "",
[2025-12-17 15:12:31]  *** Listing of results directory ***
[2025-12-17 15:12:31] total 405140
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 22:48 pilot3.tar.gz
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 22:50 queuedata.json
[2025-12-17 15:12:31] -rwx------ 1 boincer umatlas     36322 Dec 16 22:52 runpilot2-wrapper.sh
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas       100 Dec 17 10:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 15:12:31] -rwxr-xr-x 1 boincer umatlas      7986 Dec 17 10:57 run_atlas
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas       105 Dec 17 10:57 job.xml
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas 198086696 Dec 17 10:57 EVNT.47905888._000011.pool.root.1
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 10:57 start_atlas.sh
[2025-12-17 15:12:31] drwxrwx--x 2 boincer umatlas      4096 Dec 17 10:57 shared
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas    592378 Dec 17 10:57 input.tar.gz
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas         0 Dec 17 10:57 boinc_lockfile
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas      2445 Dec 17 10:57 pandaJob.out
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas        57 Dec 17 10:57 setup.sh.local
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas    987423 Dec 17 10:57 agis_schedconf.cvmfs.json
[2025-12-17 15:12:31] drwx------ 5 boincer umatlas      4096 Dec 17 10:57 pilot3
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas      5952 Dec 17 15:10 init_data.xml
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas 207676200 Dec 17 15:11 HITS.47905890._000308.pool.root.1
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas       531 Dec 17 15:11 boinc_task_state.xml
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas      1054 Dec 17 15:11 memory_monitor_summary.json
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas   1516240 Dec 17 15:11 agis_ddmendpoints.agis.ALL.json
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas    472701 Dec 17 15:11 log.47905890._000308.job.log.tgz.1
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas      8192 Dec 17 15:11 boinc_mmap_file
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas      7853 Dec 17 15:11 heartbeat.json
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas        29 Dec 17 15:11 wrapper_checkpoint.txt
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas        95 Dec 17 15:12 pilot_heartbeat.json
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas       819 Dec 17 15:12 pilotlog.txt
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas   2118795 Dec 17 15:12 log.47905890._000308.job.log.1
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas       357 Dec 17 15:12 output.list
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas       620 Dec 17 15:12 runtime_log
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas   2611200 Dec 17 15:12 result.tar.gz
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas      9343 Dec 17 15:12 runtime_log.err
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas       662 Dec 17 15:12 eBXKDmBlxp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzMbKDmOBgNTn.diag
[2025-12-17 15:12:31] -rw-r--r-- 1 boincer umatlas     21291 Dec 17 15:12 stderr.txt
[2025-12-17 15:12:31] HITS file was successfully produced:
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas 207676200 Dec 17 15:11 shared/HITS.pool.root.1
[2025-12-17 15:12:31]  *** Contents of shared directory: ***
[2025-12-17 15:12:31] total 399412
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas 198086696 Dec 17 10:57 ATLAS.root_0
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 10:57 start_atlas.sh
[2025-12-17 15:12:31] -rw-r--r-- 2 boincer umatlas    592378 Dec 17 10:57 input.tar.gz
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas 207676200 Dec 17 15:11 HITS.pool.root.1
[2025-12-17 15:12:31] -rw------- 1 boincer umatlas   2611200 Dec 17 15:12 result.tar.gz
15:12:32 (1391): run_atlas exited; CPU time 117329.560656
15:12:32 (1391): called boinc_finish(0)

</stderr_txt>
]]>

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