Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:21:19 (997928): wrapper (7.7.26015): starting
16:21:19 (997928): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 16:21:19] Arguments: --nthreads 12
[2025-12-17 16:21:19] Threads: 12
[2025-12-17 16:21:19] Checking for CVMFS
[2025-12-17 16:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 16:21:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 16:21:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 16:21:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 16:21:19] 2.13.3.0 583647 182 55060 154112 1 188 2990774 4096000 1858 130560 0 1159084 99.998 4237 369 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-17 16:21:19] CVMFS is ok
[2025-12-17 16:21:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 16:21:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 16:21:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-17 16:21:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-17 16:21:19] Further information can be found at the LHC@home message board.
[2025-12-17 16:21:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 16:21:19] Checking for apptainer binary...
[2025-12-17 16:21:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 16:21:19] Running /usr/bin/apptainer --version
[2025-12-17 16:21:19] apptainer version 1.4.5-2.el10_1
[2025-12-17 16:21:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 16:21:19] OSIRIS
[2025-12-17 16:21:19] apptainer works
[2025-12-17 16:21:19] Set ATHENA_PROC_NUMBER=12
[2025-12-17 16:21:19] Set ATHENA_CORE_NUMBER=12
[2025-12-17 16:21:19] Starting ATLAS job with PandaID=6931598552
[2025-12-17 16:21:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 17:31:42]  *** The last 200 lines of the pilot log: ***
[2025-12-17 17:31:42]  lfn=log.47886855._000128.job.log.tgz.1
[2025-12-17 17:31:42]  mtime=0
[2025-12-17 17:31:42]  protocol_id=None
[2025-12-17 17:31:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 17:31:42]  replicas=None
[2025-12-17 17:31:42]  scope=mc23_13p6TeV
[2025-12-17 17:31:42]  status=None
[2025-12-17 17:31:42]  status_code=0
[2025-12-17 17:31:42]  storage_token=
[2025-12-17 17:31:42]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6931598552/log.47886855._000128.job.log.tgz.1
[2025-12-17 17:31:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/77/log.47886855._000128.job.log.tgz.1
[2025-12-17 17:31:42]  workdir=None
[2025-12-17 17:31:42] ]
[2025-12-17 17:31:42] 2025-12-17 16:30:38,525 | INFO     | transferring file log.47886855._000128.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6931598552/log.47886855._000128.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-12-17 17:31:42] 2025-12-17 16:30:38,526 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6931598552/log.47886855._000128.job.log.tgz.1 /var/lib/boinc/slots/3/log.47886855._000128.job
[2025-12-17 17:31:42] 2025-12-17 16:30:38,535 | INFO     | adding to output.list: log.47886855._000128.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/77/log.47886855._000128.job.log.tg
[2025-12-17 17:31:42] 2025-12-17 16:30:38,535 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 17:31:42] 2025-12-17 16:30:38,535 | INFO     | summary of transferred files:
[2025-12-17 17:31:42] 2025-12-17 16:30:38,535 | INFO     |  -- lfn=log.47886855._000128.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 17:31:42] 2025-12-17 16:30:38,535 | INFO     | stage-out finished correctly
[2025-12-17 17:31:42] 2025-12-17 16:30:40,037 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 17:31:42] 2025-12-17 16:30:40,231 | INFO     | time since job start (4150s) is within the limit (174528.0s)
[2025-12-17 17:31:42] 2025-12-17 16:30:40,641 | INFO     | monitor loop #317: job 0:6931598552 is in state 'finished'
[2025-12-17 17:31:42] 2025-12-17 16:30:40,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 17:31:42] 2025-12-17 16:30:42,237 | INFO     | time since job start (4152s) is within the limit (174528.0s)
[2025-12-17 17:31:42] 2025-12-17 16:30:42,585 | INFO     | job 6931598552 has state=finished
[2025-12-17 17:31:42] 2025-12-17 16:30:42,585 | INFO     | preparing for final server update for job 6931598552 in state='finished'
[2025-12-17 17:31:42] 2025-12-17 16:30:43,145 | INFO     | monitor loop #318: job 0:6931598552 is in state 'finished'
[2025-12-17 17:31:42] 2025-12-17 16:30:43,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 17:31:42] 2025-12-17 16:30:43,551 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | this job has now completed (state=finished)
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | log transfer has been attempted: DONE
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | job 6931598552 has finished - writing final server update
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | total number of processed events: 400 (read)
[2025-12-17 17:31:42] 2025-12-17 16:30:43,552 | INFO     | executing command: lscpu
[2025-12-17 17:31:42] 2025-12-17 16:30:43,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 17:31:42] 2025-12-17 16:30:44,243 | INFO     | time since job start (4154s) is within the limit (174528.0s)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,134 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 17:31:42] 2025-12-17 16:30:45,137 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4419.599104166667
[2025-12-17 17:31:42] 2025-12-17 16:30:45,139 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6931598552/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,140 | INFO     | extracted standard info from prmon json
[2025-12-17 17:31:42] 2025-12-17 16:30:45,140 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 17:31:42] 2025-12-17 16:30:45,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 17:31:42] 2025-12-17 16:30:45,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 17:31:42] 2025-12-17 16:30:45,140 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | fitting pss+swap vs Time
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | sum of square deviations: 70364110.0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | sum of deviations: 923032723.9999999
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | mean x: 1765987042.0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | mean y: 2787944.229508197
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | intersect: -23163337939.06472
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | chi2: 0.0014840881953732765
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | current memory leak: 13.12 B/s (using 61 data points, chi2=0.00)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | could have reported an average CPU frequency of 4663 MHz (6 samples)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | ..............................
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . Timing measurements:
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . get job = 0 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . initial setup = 1 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . payload setup = 2 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . stage-in = 0 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . payload execution = 4128 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . stage-out = 0 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | . log creation = 0 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,141 | INFO     | ..............................
[2025-12-17 17:31:42] 2025-12-17 16:30:45,178 | INFO     | 
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | job summary report
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | --------------------------------------------------
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | PanDA job id: 6931598552
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | task id: 47886855
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | errors: (none)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | pilot state: finished 
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | transexitcode: 0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | exeerrorcode: 0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | exeerrordiag: 
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | exitcode: 0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | exitmsg: OK
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | cpuconsumptiontime: 45083 s
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | nevents: 400
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | neventsw: 0
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | pid: 1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | pgrp: 1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | corecount: 12
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | event service: False
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | sizes: {0: 2283953, 4: 2284215, 11: 2284243, 4134: 2310230, 4135: 2319228, 4137: 2319284, 4142: 2319606}
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | --------------------------------------------------
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | 
[2025-12-17 17:31:42] 2025-12-17 16:30:45,179 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | job 6931598552 has completed (purged errors)
[2025-12-17 17:31:42] 2025-12-17 16:30:45,190 | INFO     | overall cleanup function is called
[2025-12-17 17:31:42] 2025-12-17 16:30:46,196 | INFO     | --- collectZombieJob: --- 10, [1008574]
[2025-12-17 17:31:42] 2025-12-17 16:30:46,196 | INFO     | zombie collector waiting for pid 1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:46,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 17:31:42] 2025-12-17 16:30:46,196 | INFO     | collected zombie processes
[2025-12-17 17:31:42] 2025-12-17 16:30:46,196 | INFO     | will attempt to kill all subprocesses of pid=1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:46,253 | INFO     | process IDs to be killed: [1008574] (in reverse order)
[2025-12-17 17:31:42] 2025-12-17 16:30:46,281 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 17:31:42] 2025-12-17 16:30:46,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 17:31:42] 2025-12-17 16:30:46,285 | INFO     | did not find any defunct processes belonging to 1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:46,287 | INFO     | did not find any defunct processes belonging to 1008574
[2025-12-17 17:31:42] 2025-12-17 16:30:46,287 | INFO     | ready for new job
[2025-12-17 17:31:42] 2025-12-17 16:30:46,287 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 17:31:42] 2025-12-17 16:30:46,288 | INFO     | ***************************************
[2025-12-17 17:31:42] 2025-12-17 16:30:46,288 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 17:31:42] 2025-12-17 16:30:46,288 | INFO     | ***************************************
[2025-12-17 17:31:42] 2025-12-17 16:30:46,288 | INFO     | 
[2025-12-17 17:31:42] 2025-12-17 16:30:46,289 | INFO     | architecture information:
[2025-12-17 17:31:42] 2025-12-17 16:30:46,289 | INFO     | executing command: cat /etc/os-release
[2025-12-17 17:31:42] 2025-12-17 16:30:46,295 | INFO     | cat /etc/os-release:
[2025-12-17 17:31:42] NAME="CentOS Linux"
[2025-12-17 17:31:42] VERSION="7 (Core)"
[2025-12-17 17:31:42] ID="centos"
[2025-12-17 17:31:42] ID_LIKE="rhel fedora"
[2025-12-17 17:31:42] VERSION_ID="7"
[2025-12-17 17:31:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 17:31:42] ANSI_COLOR="0;31"
[2025-12-17 17:31:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 17:31:42] HOME_URL="https://www.centos.org/"
[2025-12-17 17:31:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 17:31:42] 
[2025-12-17 17:31:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 17:31:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 17:31:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 17:31:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 17:31:42] 
[2025-12-17 17:31:42] 2025-12-17 16:30:46,296 | INFO     | ***************************************
[2025-12-17 17:31:42] 2025-12-17 16:30:46,798 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-12-17 17:31:42] 2025-12-17 16:30:46,806 | INFO     | sufficient remaining disk space (1266260377600 B)
[2025-12-17 17:31:42] 2025-12-17 16:30:46,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | INFO     | update_server=False
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 17:31:42] 2025-12-17 16:30:46,807 | INFO     | aborting loop
[2025-12-17 17:31:42] 2025-12-17 16:30:46,903 | INFO     | all data control threads have been joined
[2025-12-17 17:31:42] 2025-12-17 16:30:47,299 | INFO     | all payload control threads have been joined
[2025-12-17 17:31:42] 2025-12-17 16:30:47,808 | INFO     | [job] queue monitor thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:47,812 | INFO     | [job] retrieve thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:47,813 | INFO     | [job] job monitor thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:47,835 | INFO     | all job control threads have been joined
[2025-12-17 17:31:42] 2025-12-17 16:30:47,908 | INFO     | [data] control thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,169 | INFO     | [payload] failed_post thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,305 | INFO     | [payload] control thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,619 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,739 | INFO     | [job] validate thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,756 | INFO     | [data] copytool_in thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,774 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,813 | INFO     | [data] copytool_out thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:48,837 | INFO     | [job] control thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:49,038 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:49,362 | INFO     | [payload] validate_post thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:30:50,813 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 17:31:42] 2025-12-17 16:31:17,388 | INFO     | PID=1001826 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 17:31:42] 2025-12-17 16:31:17,388 | INFO     | .. there are 4 such processes running
[2025-12-17 17:31:42] 2025-12-17 16:31:17,389 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 17:31:42] 2025-12-17 16:31:17,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 17:31:42] 2025-12-17 16:31:17,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 17:31:42] 2025-12-17 16:31:37,112 | INFO     | [monitor] cgroup control has ended
[2025-12-17 17:31:42] 2025-12-17 16:31:37,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140051848177472)>', '<ExcThread(monitor, started 140051367327488)>']
[2025-12-17 17:31:42] 2025-12-17 16:31:38,486 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 17:31:42] 2025-12-17 16:31:38,486 | INFO     | [monitor] control thread has ended
[2025-12-17 17:31:42] 2025-12-17 16:31:42,733 | INFO     | all workflow threads have been joined
[2025-12-17 17:31:42] 2025-12-17 16:31:42,734 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 17:31:42] 2025-12-17 16:31:42,734 | INFO     | traces error code: 0
[2025-12-17 17:31:42] 2025-12-17 16:31:42,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 17:31:42] 2025-12-17 16:31:42,809 [wrapper] ==== pilot stdout END ====
[2025-12-17 17:31:42] 2025-12-17 16:31:42,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 17:31:42] 2025-12-17 16:31:42,811 [wrapper] pilotpid: 1001826
[2025-12-17 17:31:42] 2025-12-17 16:31:42,812 [wrapper] Pilot exit status: 0
[2025-12-17 17:31:42] 2025-12-17 16:31:42,816 [wrapper] pandaids: 6931598552
[2025-12-17 17:31:42] 2025-12-17 16:31:42,833 [wrapper] cleanup supervisor_pilot 1129373 1001827
[2025-12-17 17:31:42] 2025-12-17 16:31:42,834 [wrapper] Test setup, not cleaning
[2025-12-17 17:31:42] 2025-12-17 16:31:42,834 [wrapper] apfmon messages muted
[2025-12-17 17:31:42] 2025-12-17 16:31:42,835 [wrapper] ==== wrapper stdout END ====
[2025-12-17 17:31:42] 2025-12-17 16:31:42,836 [wrapper] ==== wrapper stderr END ====
[2025-12-17 17:31:42]  *** Error codes and diagnostics ***
[2025-12-17 17:31:42]     "exeErrorCode": 0,
[2025-12-17 17:31:42]     "exeErrorDiag": "",
[2025-12-17 17:31:42]     "pilotErrorCode": 0,
[2025-12-17 17:31:42]     "pilotErrorDiag": "",
[2025-12-17 17:31:42]  *** Listing of results directory ***
[2025-12-17 17:31:42] total 356112
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc      5112 Dec 16 21:04 queuedata.json
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc    579449 Dec 16 21:04 pilot3.tar.gz
[2025-12-17 17:31:42] -rwx------ 1 boinc boinc     36322 Dec 16 21:04 runpilot2-wrapper.sh
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc       100 Dec 17 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 17:31:42] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 16:21 run_atlas
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc       105 Dec 17 16:21 job.xml
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:21 start_atlas.sh
[2025-12-17 17:31:42] drwxrwx--x 2 boinc boinc        68 Dec 17 16:21 shared
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc    592383 Dec 17 16:21 input.tar.gz
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc 191912881 Dec 17 16:21 EVNT.47886852._000008.pool.root.1
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:21 boinc_setup_complete
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc      9189 Dec 17 16:21 init_data.xml
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:21 boinc_lockfile
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc      2506 Dec 17 16:21 pandaJob.out
[2025-12-17 17:31:42] -rw------- 1 boinc boinc    987423 Dec 17 16:21 agis_schedconf.cvmfs.json
[2025-12-17 17:31:42] -rw------- 1 boinc boinc   1516240 Dec 17 16:21 agis_ddmendpoints.agis.ALL.json
[2025-12-17 17:31:42] drwx------ 5 boinc boinc      4096 Dec 17 16:21 pilot3
[2025-12-17 17:31:42] -rw------- 1 boinc boinc 166848391 Dec 17 17:30 HITS.47886855._000128.pool.root.1
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc       529 Dec 17 17:30 boinc_task_state.xml
[2025-12-17 17:31:42] -rw------- 1 boinc boinc      1028 Dec 17 17:30 memory_monitor_summary.json
[2025-12-17 17:31:42] -rw------- 1 boinc boinc    365743 Dec 17 17:30 log.47886855._000128.job.log.tgz.1
[2025-12-17 17:31:42] -rw------- 1 boinc boinc      7774 Dec 17 17:30 heartbeat.json
[2025-12-17 17:31:42] -rw------- 1 boinc boinc        95 Dec 17 17:31 pilot_heartbeat.json
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc      8192 Dec 17 17:31 boinc_mmap_file
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc        27 Dec 17 17:31 wrapper_checkpoint.txt
[2025-12-17 17:31:42] -rw------- 1 boinc boinc      4825 Dec 17 17:31 pilotlog.txt
[2025-12-17 17:31:42] -rw------- 1 boinc boinc    631736 Dec 17 17:31 log.47886855._000128.job.log.1
[2025-12-17 17:31:42] -rw------- 1 boinc boinc       357 Dec 17 17:31 output.list
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc       620 Dec 17 17:31 runtime_log
[2025-12-17 17:31:42] -rw------- 1 boinc boinc   1013760 Dec 17 17:31 result.tar.gz
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc      8765 Dec 17 17:31 runtime_log.err
[2025-12-17 17:31:42] -rw------- 1 boinc boinc       639 Dec 17 17:31 NItKDmySqp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFbaKDm7o9NKm.diag
[2025-12-17 17:31:42] -rw-r--r-- 1 boinc boinc     21864 Dec 17 17:31 stderr.txt
[2025-12-17 17:31:42] HITS file was successfully produced:
[2025-12-17 17:31:42] -rw------- 1 boinc boinc 166848391 Dec 17 17:30 shared/HITS.pool.root.1
[2025-12-17 17:31:42]  *** Contents of shared directory: ***
[2025-12-17 17:31:42] total 351944
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:21 start_atlas.sh
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc    592383 Dec 17 16:21 input.tar.gz
[2025-12-17 17:31:42] -rw-r--r-- 2 boinc boinc 191912881 Dec 17 16:21 ATLAS.root_0
[2025-12-17 17:31:42] -rw------- 1 boinc boinc 166848391 Dec 17 17:30 HITS.pool.root.1
[2025-12-17 17:31:42] -rw------- 1 boinc boinc   1013760 Dec 17 17:31 result.tar.gz
17:31:44 (997928): run_atlas exited; CPU time 45107.163982
17:31:44 (997928): called boinc_finish(0)

</stderr_txt>
]]>

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