Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:38:16 (1037331): wrapper (7.7.26015): starting
16:38:16 (1037331): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 16:38:16] Arguments: --nthreads 12
[2025-12-17 16:38:16] Threads: 12
[2025-12-17 16:38:16] Checking for CVMFS
[2025-12-17 16:38:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 16:38:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 16:38:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 16:38:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 16:38:16] 2.13.3.0 583647 199 55252 154112 0 188 2993023 4096000 2787 130560 0 1270328 99.998 4240 364 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-17 16:38:16] CVMFS is ok
[2025-12-17 16:38:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 16:38:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 16:38:16] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-17 16:38:16] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-17 16:38:16] Further information can be found at the LHC@home message board.
[2025-12-17 16:38:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 16:38:16] Checking for apptainer binary...
[2025-12-17 16:38:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 16:38:16] Running /usr/bin/apptainer --version
[2025-12-17 16:38:16] apptainer version 1.4.5-2.el10_1
[2025-12-17 16:38:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 16:38:16] OSIRIS
[2025-12-17 16:38:16] apptainer works
[2025-12-17 16:38:16] Set ATHENA_PROC_NUMBER=12
[2025-12-17 16:38:16] Set ATHENA_CORE_NUMBER=12
[2025-12-17 16:38:16] Starting ATLAS job with PandaID=6931737269
[2025-12-17 16:38:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 17:02:30]  *** The last 200 lines of the pilot log: ***
[2025-12-17 17:02:30]  is_tar=False
[2025-12-17 17:02:30]  lfn=log.47886831._016959.job.log.tgz.1
[2025-12-17 17:02:30]  mtime=0
[2025-12-17 17:02:30]  protocol_id=None
[2025-12-17 17:02:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 17:02:30]  replicas=None
[2025-12-17 17:02:30]  scope=mc23_13p6TeV
[2025-12-17 17:02:30]  status=None
[2025-12-17 17:02:30]  status_code=0
[2025-12-17 17:02:30]  storage_token=
[2025-12-17 17:02:30]  surl=/var/lib/boinc/slots/6/PanDA_Pilot-6931737269/log.47886831._016959.job.log.tgz.1
[2025-12-17 17:02:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/f3/log.47886831._016959.job.log.tgz.1
[2025-12-17 17:02:30]  workdir=None
[2025-12-17 17:02:30] ]
[2025-12-17 17:02:30] 2025-12-17 16:01:56,829 | INFO     | transferring file log.47886831._016959.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6931737269/log.47886831._016959.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-12-17 17:02:30] 2025-12-17 16:01:56,829 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6931737269/log.47886831._016959.job.log.tgz.1 /var/lib/boinc/slots/6/log.47886831._016959.job
[2025-12-17 17:02:30] 2025-12-17 16:01:56,838 | INFO     | adding to output.list: log.47886831._016959.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/f3/log.47886831._016959.job.log.tg
[2025-12-17 17:02:30] 2025-12-17 16:01:56,838 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 17:02:30] 2025-12-17 16:01:56,839 | INFO     | summary of transferred files:
[2025-12-17 17:02:30] 2025-12-17 16:01:56,839 | INFO     |  -- lfn=log.47886831._016959.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 17:02:30] 2025-12-17 16:01:56,839 | INFO     | stage-out finished correctly
[2025-12-17 17:02:30] 2025-12-17 16:01:56,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 17:02:30] 2025-12-17 16:01:57,066 | INFO     | job 6931737269 has state=finished
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | preparing for final server update for job 6931737269 in state='finished'
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | this job has now completed (state=finished)
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | log transfer has been attempted: DONE
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | job 6931737269 has finished - writing final server update
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | total number of processed events: 400 (read)
[2025-12-17 17:02:30] 2025-12-17 16:01:57,067 | INFO     | executing command: lscpu
[2025-12-17 17:02:30] 2025-12-17 16:01:57,080 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 17:02:30] 2025-12-17 16:01:57,230 | INFO     | monitor loop #112: job 0:6931737269 is in state 'finished'
[2025-12-17 17:02:30] 2025-12-17 16:01:57,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 17:02:30] 2025-12-17 16:01:57,427 | INFO     | time since job start (1416s) is within the limit (174528.0s)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,322 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 17:02:30] 2025-12-17 16:01:58,324 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4347.462375000001
[2025-12-17 17:02:30] 2025-12-17 16:01:58,326 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6931737269/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | INFO     | extracted standard info from prmon json
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | INFO     | fitting pss+swap vs Time
[2025-12-17 17:02:30] 2025-12-17 16:01:58,327 | INFO     | sum of square deviations: 1265140.0
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | sum of deviations: 71604209.5
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | mean x: 1765986679.5
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | mean y: 2769984.6875
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | intersect: -99948286952.19487
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | chi2: 0.0004357845786677726
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | current memory leak: 56.60 B/s (using 16 data points, chi2=0.00)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | could have reported an average CPU frequency of 4661 MHz (4 samples)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | ..............................
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . Timing measurements:
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . get job = 0 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . initial setup = 1 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . payload setup = 1 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . stage-in = 0 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . payload execution = 1397 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . stage-out = 0 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | . log creation = 0 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,328 | INFO     | ..............................
[2025-12-17 17:02:30] 2025-12-17 16:01:58,363 | INFO     | 
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | job summary report
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | --------------------------------------------------
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | PanDA job id: 6931737269
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | task id: 47886831
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | errors: (none)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | pilot state: finished 
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | transexitcode: 0
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | exeerrorcode: 0
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | exeerrordiag: 
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | exitcode: 0
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | exitmsg: OK
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | cpuconsumptiontime: 14775 s
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | nevents: 400
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | neventsw: 0
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | pid: 1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | pgrp: 1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | corecount: 12
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | event service: False
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | sizes: {0: 2283993, 2: 2284255, 11: 2284283, 1403: 2308985, 1404: 2318039, 1405: 2318177}
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | --------------------------------------------------
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | 
[2025-12-17 17:02:30] 2025-12-17 16:01:58,364 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-17 17:02:30] 2025-12-17 16:01:58,372 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | job 6931737269 has completed (purged errors)
[2025-12-17 17:02:30] 2025-12-17 16:01:58,373 | INFO     | overall cleanup function is called
[2025-12-17 17:02:30] 2025-12-17 16:01:58,503 | INFO     | PID=1041223 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 17:02:30] 2025-12-17 16:01:58,503 | INFO     | .. there are 4 such processes running
[2025-12-17 17:02:30] 2025-12-17 16:01:59,376 | INFO     | --- collectZombieJob: --- 10, [1047968]
[2025-12-17 17:02:30] 2025-12-17 16:01:59,376 | INFO     | zombie collector waiting for pid 1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:59,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 17:02:30] 2025-12-17 16:01:59,376 | INFO     | collected zombie processes
[2025-12-17 17:02:30] 2025-12-17 16:01:59,376 | INFO     | will attempt to kill all subprocesses of pid=1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:59,430 | INFO     | process IDs to be killed: [1047968] (in reverse order)
[2025-12-17 17:02:30] 2025-12-17 16:01:59,458 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 17:02:30] 2025-12-17 16:01:59,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 17:02:30] 2025-12-17 16:01:59,461 | INFO     | did not find any defunct processes belonging to 1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:59,462 | INFO     | did not find any defunct processes belonging to 1047968
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | ready for new job
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | ***************************************
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | ***************************************
[2025-12-17 17:02:30] 2025-12-17 16:01:59,463 | INFO     | 
[2025-12-17 17:02:30] 2025-12-17 16:01:59,464 | INFO     | architecture information:
[2025-12-17 17:02:30] 2025-12-17 16:01:59,464 | INFO     | executing command: cat /etc/os-release
[2025-12-17 17:02:30] 2025-12-17 16:01:59,471 | INFO     | cat /etc/os-release:
[2025-12-17 17:02:30] NAME="CentOS Linux"
[2025-12-17 17:02:30] VERSION="7 (Core)"
[2025-12-17 17:02:30] ID="centos"
[2025-12-17 17:02:30] ID_LIKE="rhel fedora"
[2025-12-17 17:02:30] VERSION_ID="7"
[2025-12-17 17:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 17:02:30] ANSI_COLOR="0;31"
[2025-12-17 17:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 17:02:30] HOME_URL="https://www.centos.org/"
[2025-12-17 17:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 17:02:30] 
[2025-12-17 17:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 17:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 17:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 17:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 17:02:30] 
[2025-12-17 17:02:30] 2025-12-17 16:01:59,471 | INFO     | ***************************************
[2025-12-17 17:02:30] 2025-12-17 16:01:59,973 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-17 17:02:30] 2025-12-17 16:01:59,981 | INFO     | sufficient remaining disk space (1265484431360 B)
[2025-12-17 17:02:30] 2025-12-17 16:01:59,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 17:02:30] 2025-12-17 16:01:59,981 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 17:02:30] 2025-12-17 16:01:59,981 | INFO     | update_server=False
[2025-12-17 17:02:30] 2025-12-17 16:01:59,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 17:02:30] 2025-12-17 16:01:59,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 17:02:30] 2025-12-17 16:01:59,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:02:30] 2025-12-17 16:02:00,274 | INFO     | all payload control threads have been joined
[2025-12-17 17:02:30] 2025-12-17 16:02:00,384 | INFO     | all job control threads have been joined
[2025-12-17 17:02:30] 2025-12-17 16:02:00,585 | INFO     | all data control threads have been joined
[2025-12-17 17:02:30] 2025-12-17 16:02:00,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:02:30] 2025-12-17 16:02:00,738 | INFO     | aborting loop
[2025-12-17 17:02:30] 2025-12-17 16:02:00,987 | INFO     | [job] retrieve thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:00,987 | INFO     | [job] queue monitor thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,279 | INFO     | [payload] control thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,389 | INFO     | [job] control thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,590 | INFO     | [data] control thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,672 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,713 | INFO     | [job] validate thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,743 | INFO     | [job] job monitor thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,822 | INFO     | [payload] failed_post thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,864 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,904 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,919 | INFO     | [data] copytool_in thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:01,987 | INFO     | [data] copytool_out thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:02,081 | INFO     | job.realtimelogging is not enabled
[2025-12-17 17:02:30] 2025-12-17 16:02:02,365 | INFO     | [payload] validate_post thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:02,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 17:02:30] 2025-12-17 16:02:03,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:06,956 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 17:02:30] 2025-12-17 16:02:22,830 | INFO     | [monitor] cgroup control has ended
[2025-12-17 17:02:30] 2025-12-17 16:02:24,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020815021888)>', '<ExcThread(monitor, started 140020027488000)>']
[2025-12-17 17:02:30] 2025-12-17 16:02:29,721 | INFO     | all workflow threads have been joined
[2025-12-17 17:02:30] 2025-12-17 16:02:29,721 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 17:02:30] 2025-12-17 16:02:29,721 | INFO     | traces error code: 0
[2025-12-17 17:02:30] 2025-12-17 16:02:29,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 17:02:30] 2025-12-17 16:02:30,631 | INFO     | PID=1041223 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 17:02:30] 2025-12-17 16:02:30,631 | INFO     | .. there are 4 such processes running
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | CRITICAL | thread 'MainThread' is not alive
[2025-12-17 17:02:30] 2025-12-17 16:02:30,633 | INFO     | [monitor] control thread has ended
[2025-12-17 17:02:30] 2025-12-17 16:02:30,691 [wrapper] ==== pilot stdout END ====
[2025-12-17 17:02:30] 2025-12-17 16:02:30,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 17:02:30] 2025-12-17 16:02:30,693 [wrapper] pilotpid: 1041223
[2025-12-17 17:02:30] 2025-12-17 16:02:30,694 [wrapper] Pilot exit status: 0
[2025-12-17 17:02:30] 2025-12-17 16:02:30,698 [wrapper] pandaids: 6931737269
[2025-12-17 17:02:30] 2025-12-17 16:02:30,715 [wrapper] cleanup supervisor_pilot 1079099 1041224
[2025-12-17 17:02:30] 2025-12-17 16:02:30,716 [wrapper] Test setup, not cleaning
[2025-12-17 17:02:30] 2025-12-17 16:02:30,718 [wrapper] apfmon messages muted
[2025-12-17 17:02:30] 2025-12-17 16:02:30,719 [wrapper] ==== wrapper stdout END ====
[2025-12-17 17:02:30] 2025-12-17 16:02:30,720 [wrapper] ==== wrapper stderr END ====
[2025-12-17 17:02:30]  *** Error codes and diagnostics ***
[2025-12-17 17:02:30]     "exeErrorCode": 0,
[2025-12-17 17:02:30]     "exeErrorDiag": "",
[2025-12-17 17:02:30]     "pilotErrorCode": 0,
[2025-12-17 17:02:30]     "pilotErrorDiag": "",
[2025-12-17 17:02:30]  *** Listing of results directory ***
[2025-12-17 17:02:30] total 336440
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc    579449 Dec 17 04:48 pilot3.tar.gz
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc      5112 Dec 17 04:50 queuedata.json
[2025-12-17 17:02:30] -rwx------ 1 boinc boinc     36322 Dec 17 04:51 runpilot2-wrapper.sh
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc       100 Dec 17 16:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 17:02:30] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 16:38 run_atlas
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc       105 Dec 17 16:38 job.xml
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:38 start_atlas.sh
[2025-12-17 17:02:30] drwxrwx--x 2 boinc boinc        68 Dec 17 16:38 shared
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc    592412 Dec 17 16:38 input.tar.gz
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc 192433127 Dec 17 16:38 EVNT.47886829._000677.pool.root.1
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc      9189 Dec 17 16:38 init_data.xml
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:38 boinc_setup_complete
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:38 boinc_lockfile
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc      2539 Dec 17 16:38 pandaJob.out
[2025-12-17 17:02:30] -rw------- 1 boinc boinc    987423 Dec 17 16:38 agis_schedconf.cvmfs.json
[2025-12-17 17:02:30] -rw------- 1 boinc boinc   1516240 Dec 17 16:38 agis_ddmendpoints.agis.ALL.json
[2025-12-17 17:02:30] drwx------ 5 boinc boinc      4096 Dec 17 16:38 pilot3
[2025-12-17 17:02:30] -rw------- 1 boinc boinc 147016734 Dec 17 17:01 HITS.47886831._016959.pool.root.1
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc       529 Dec 17 17:01 boinc_task_state.xml
[2025-12-17 17:02:30] -rw------- 1 boinc boinc      1028 Dec 17 17:01 memory_monitor_summary.json
[2025-12-17 17:02:30] -rw------- 1 boinc boinc    335714 Dec 17 17:01 log.47886831._016959.job.log.tgz.1
[2025-12-17 17:02:30] -rw------- 1 boinc boinc      7785 Dec 17 17:01 heartbeat.json
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc      8192 Dec 17 17:02 boinc_mmap_file
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc        27 Dec 17 17:02 wrapper_checkpoint.txt
[2025-12-17 17:02:30] -rw------- 1 boinc boinc        95 Dec 17 17:02 pilot_heartbeat.json
[2025-12-17 17:02:30] -rw------- 1 boinc boinc       892 Dec 17 17:02 pilotlog.txt
[2025-12-17 17:02:30] -rw------- 1 boinc boinc    249081 Dec 17 17:02 log.47886831._016959.job.log.1
[2025-12-17 17:02:30] -rw------- 1 boinc boinc       357 Dec 17 17:02 output.list
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc       620 Dec 17 17:02 runtime_log
[2025-12-17 17:02:30] -rw------- 1 boinc boinc    604160 Dec 17 17:02 result.tar.gz
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc      8765 Dec 17 17:02 runtime_log.err
[2025-12-17 17:02:30] -rw------- 1 boinc boinc       637 Dec 17 17:02 H1yMDmzkxp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4qWKDmv00gVn.diag
[2025-12-17 17:02:30] -rw-r--r-- 1 boinc boinc     21762 Dec 17 17:02 stderr.txt
[2025-12-17 17:02:30] HITS file was successfully produced:
[2025-12-17 17:02:30] -rw------- 1 boinc boinc 147016734 Dec 17 17:01 shared/HITS.pool.root.1
[2025-12-17 17:02:30]  *** Contents of shared directory: ***
[2025-12-17 17:02:30] total 332684
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:38 start_atlas.sh
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc    592412 Dec 17 16:38 input.tar.gz
[2025-12-17 17:02:30] -rw-r--r-- 2 boinc boinc 192433127 Dec 17 16:38 ATLAS.root_0
[2025-12-17 17:02:30] -rw------- 1 boinc boinc 147016734 Dec 17 17:01 HITS.pool.root.1
[2025-12-17 17:02:30] -rw------- 1 boinc boinc    604160 Dec 17 17:02 result.tar.gz
17:02:32 (1037331): run_atlas exited; CPU time 14782.872569
17:02:32 (1037331): called boinc_finish(0)

</stderr_txt>
]]>

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