Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:48:59 (1057396): wrapper (7.7.26015): starting
16:48:59 (1057396): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 16:48:59] Arguments: --nthreads 12
[2025-12-17 16:48:59] Threads: 12
[2025-12-17 16:48:59] Checking for CVMFS
[2025-12-17 16:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 16:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 16:48:59] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 16:48:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 16:48:59] 2.13.3.0 583647 210 55232 154112 2 188 2993023 4096000 2787 130560 0 1326368 99.998 4241 359 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-17 16:48:59] CVMFS is ok
[2025-12-17 16:48:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 16:48:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 16:48:59] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-17 16:48:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-17 16:48:59] Further information can be found at the LHC@home message board.
[2025-12-17 16:48:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 16:48:59] Checking for apptainer binary...
[2025-12-17 16:48:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 16:48:59] Running /usr/bin/apptainer --version
[2025-12-17 16:48:59] apptainer version 1.4.5-2.el10_1
[2025-12-17 16:48:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 16:48:59] OSIRIS
[2025-12-17 16:48:59] apptainer works
[2025-12-17 16:48:59] Set ATHENA_PROC_NUMBER=12
[2025-12-17 16:48:59] Set ATHENA_CORE_NUMBER=12
[2025-12-17 16:48:59] Starting ATLAS job with PandaID=6931737043
[2025-12-17 16:48:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 17:21:11]  *** The last 200 lines of the pilot log: ***
[2025-12-17 17:21:11]  guid=47c3825b-86f9-4abe-a972-71bd07d33e23
[2025-12-17 17:21:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-12-17 17:21:11]  is_altstaged=None
[2025-12-17 17:21:11]  is_tar=False
[2025-12-17 17:21:11]  lfn=log.47898782._005662.job.log.tgz.1
[2025-12-17 17:21:11]  mtime=0
[2025-12-17 17:21:11]  protocol_id=None
[2025-12-17 17:21:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 17:21:11]  replicas=None
[2025-12-17 17:21:11]  scope=mc23_13p6TeV
[2025-12-17 17:21:11]  status=None
[2025-12-17 17:21:11]  status_code=0
[2025-12-17 17:21:11]  storage_token=
[2025-12-17 17:21:11]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6931737043/log.47898782._005662.job.log.tgz.1
[2025-12-17 17:21:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/43/log.47898782._005662.job.log.tgz.1
[2025-12-17 17:21:11]  workdir=None
[2025-12-17 17:21:11] ]
[2025-12-17 17:21:11] 2025-12-17 16:20:14,666 | INFO     | transferring file log.47898782._005662.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6931737043/log.47898782._005662.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-12-17 17:21:11] 2025-12-17 16:20:14,666 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6931737043/log.47898782._005662.job.log.tgz.1 /var/lib/boinc/slots/2/log.47898782._005662.job
[2025-12-17 17:21:11] 2025-12-17 16:20:14,675 | INFO     | adding to output.list: log.47898782._005662.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/43/log.47898782._005662.job.log.tg
[2025-12-17 17:21:11] 2025-12-17 16:20:14,676 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 17:21:11] 2025-12-17 16:20:14,676 | INFO     | summary of transferred files:
[2025-12-17 17:21:11] 2025-12-17 16:20:14,676 | INFO     |  -- lfn=log.47898782._005662.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 17:21:11] 2025-12-17 16:20:14,676 | INFO     | stage-out finished correctly
[2025-12-17 17:21:11] 2025-12-17 16:20:14,709 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 17:21:11] 2025-12-17 16:20:15,987 | INFO     | monitor loop #146: job 0:6931737043 is in state 'finished'
[2025-12-17 17:21:11] 2025-12-17 16:20:15,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 17:21:11] 2025-12-17 16:20:16,165 | INFO     | time since job start (1873s) is within the limit (174528.0s)
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | job 6931737043 has state=finished
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | preparing for final server update for job 6931737043 in state='finished'
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | this job has now completed (state=finished)
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | log transfer has been attempted: DONE
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | job 6931737043 has finished - writing final server update
[2025-12-17 17:21:11] 2025-12-17 16:20:16,295 | INFO     | total number of processed events: 400 (read)
[2025-12-17 17:21:11] 2025-12-17 16:20:16,296 | INFO     | executing command: lscpu
[2025-12-17 17:21:11] 2025-12-17 16:20:16,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 17:21:11] 2025-12-17 16:20:17,852 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 17:21:11] 2025-12-17 16:20:17,854 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4638.988874999999
[2025-12-17 17:21:11] 2025-12-17 16:20:17,857 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6931737043/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,857 | INFO     | extracted standard info from prmon json
[2025-12-17 17:21:11] 2025-12-17 16:20:17,857 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 17:21:11] 2025-12-17 16:20:17,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 17:21:11] 2025-12-17 16:20:17,857 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | fitting pss+swap vs Time
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | sum of square deviations: 4279150.0
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | sum of deviations: 81525798.49999999
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | mean x: 1765987566.5
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | mean y: 2791548.9583333335
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | intersect: -33642569445.62805
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | chi2: 0.0004506552267219477
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | current memory leak: 19.05 B/s (using 24 data points, chi2=0.00)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | could have reported an average CPU frequency of 4740 MHz (5 samples)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | ..............................
[2025-12-17 17:21:11] 2025-12-17 16:20:17,858 | INFO     | . Timing measurements:
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . get job = 0 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . initial setup = 1 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . payload setup = 1 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . stage-in = 0 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . payload execution = 1852 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . stage-out = 0 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | . log creation = 0 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,859 | INFO     | ..............................
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | 
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | job summary report
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | --------------------------------------------------
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | PanDA job id: 6931737043
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | task id: 47898782
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | errors: (none)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | pilot state: finished 
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | transexitcode: 0
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | exeerrorcode: 0
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | exeerrordiag: 
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | exitcode: 0
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | exitmsg: OK
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | cpuconsumptiontime: 19654 s
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | nevents: 400
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | neventsw: 0
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | pid: 1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | pgrp: 1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | corecount: 12
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | event service: False
[2025-12-17 17:21:11] 2025-12-17 16:20:17,896 | INFO     | sizes: {0: 2283753, 1: 2284008, 2: 2284270, 11: 2284298, 1858: 2309193, 1859: 2318375, 1862: 2318545}
[2025-12-17 17:21:11] 2025-12-17 16:20:17,897 | INFO     | --------------------------------------------------
[2025-12-17 17:21:11] 2025-12-17 16:20:17,897 | INFO     | 
[2025-12-17 17:21:11] 2025-12-17 16:20:17,897 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-17 17:21:11] 2025-12-17 16:20:17,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | job 6931737043 has completed (purged errors)
[2025-12-17 17:21:11] 2025-12-17 16:20:17,906 | INFO     | overall cleanup function is called
[2025-12-17 17:21:11] 2025-12-17 16:20:18,912 | INFO     | --- collectZombieJob: --- 10, [1068040]
[2025-12-17 17:21:11] 2025-12-17 16:20:18,912 | INFO     | zombie collector waiting for pid 1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:18,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 17:21:11] 2025-12-17 16:20:18,912 | INFO     | collected zombie processes
[2025-12-17 17:21:11] 2025-12-17 16:20:18,912 | INFO     | will attempt to kill all subprocesses of pid=1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:18,965 | INFO     | process IDs to be killed: [1068040] (in reverse order)
[2025-12-17 17:21:11] 2025-12-17 16:20:18,993 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 17:21:11] 2025-12-17 16:20:18,994 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 17:21:11] 2025-12-17 16:20:18,997 | INFO     | did not find any defunct processes belonging to 1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:18,999 | INFO     | did not find any defunct processes belonging to 1068040
[2025-12-17 17:21:11] 2025-12-17 16:20:18,999 | INFO     | ready for new job
[2025-12-17 17:21:11] 2025-12-17 16:20:18,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 17:21:11] 2025-12-17 16:20:19,000 | INFO     | ***************************************
[2025-12-17 17:21:11] 2025-12-17 16:20:19,000 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 17:21:11] 2025-12-17 16:20:19,000 | INFO     | ***************************************
[2025-12-17 17:21:11] 2025-12-17 16:20:19,000 | INFO     | 
[2025-12-17 17:21:11] 2025-12-17 16:20:19,001 | INFO     | architecture information:
[2025-12-17 17:21:11] 2025-12-17 16:20:19,001 | INFO     | executing command: cat /etc/os-release
[2025-12-17 17:21:11] 2025-12-17 16:20:19,008 | INFO     | cat /etc/os-release:
[2025-12-17 17:21:11] NAME="CentOS Linux"
[2025-12-17 17:21:11] VERSION="7 (Core)"
[2025-12-17 17:21:11] ID="centos"
[2025-12-17 17:21:11] ID_LIKE="rhel fedora"
[2025-12-17 17:21:11] VERSION_ID="7"
[2025-12-17 17:21:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 17:21:11] ANSI_COLOR="0;31"
[2025-12-17 17:21:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 17:21:11] HOME_URL="https://www.centos.org/"
[2025-12-17 17:21:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 17:21:11] 
[2025-12-17 17:21:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 17:21:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 17:21:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 17:21:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 17:21:11] 
[2025-12-17 17:21:11] 2025-12-17 16:20:19,008 | INFO     | ***************************************
[2025-12-17 17:21:11] 2025-12-17 16:20:19,509 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | INFO     | sufficient remaining disk space (1266408226816 B)
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | INFO     | update_server=False
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:21:11] 2025-12-17 16:20:19,518 | INFO     | aborting loop
[2025-12-17 17:21:11] 2025-12-17 16:20:20,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 17:21:11] 2025-12-17 16:20:20,322 | INFO     | all data control threads have been joined
[2025-12-17 17:21:11] 2025-12-17 16:20:20,431 | INFO     | all job control threads have been joined
[2025-12-17 17:21:11] 2025-12-17 16:20:20,452 | INFO     | all payload control threads have been joined
[2025-12-17 17:21:11] 2025-12-17 16:20:20,523 | INFO     | [job] retrieve thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:20,523 | INFO     | [job] job monitor thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:20,524 | INFO     | [job] queue monitor thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:20,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 17:21:11] 2025-12-17 16:20:20,888 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:20,946 | INFO     | [job] validate thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,037 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,046 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,262 | INFO     | [data] copytool_in thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,279 | INFO     | [payload] failed_post thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,328 | INFO     | [data] control thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,437 | INFO     | [job] control thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,457 | INFO     | [payload] control thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:21,785 | INFO     | [payload] validate_post thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:22,222 | INFO     | [data] copytool_out thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:24,756 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:29,894 | INFO     | job.realtimelogging is not enabled
[2025-12-17 17:21:11] 2025-12-17 16:20:30,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 17:21:11] 2025-12-17 16:20:49,298 | INFO     | PID=1061290 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 17:21:11] 2025-12-17 16:20:49,298 | INFO     | .. there are 4 such processes running
[2025-12-17 17:21:11] 2025-12-17 16:20:49,298 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 17:21:11] 2025-12-17 16:20:49,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 17:21:11] 2025-12-17 16:20:49,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 17:21:11] 2025-12-17 16:21:06,130 | INFO     | [monitor] cgroup control has ended
[2025-12-17 17:21:11] 2025-12-17 16:21:06,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044833027904)>', '<ExcThread(monitor, started 140044480259840)>']
[2025-12-17 17:21:11] 2025-12-17 16:21:07,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 17:21:11] 2025-12-17 16:21:07,390 | INFO     | [monitor] control thread has ended
[2025-12-17 17:21:11] 2025-12-17 16:21:11,581 | INFO     | all workflow threads have been joined
[2025-12-17 17:21:11] 2025-12-17 16:21:11,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 17:21:11] 2025-12-17 16:21:11,582 | INFO     | traces error code: 0
[2025-12-17 17:21:11] 2025-12-17 16:21:11,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 17:21:11] 2025-12-17 16:21:11,640 [wrapper] ==== pilot stdout END ====
[2025-12-17 17:21:11] 2025-12-17 16:21:11,642 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 17:21:11] 2025-12-17 16:21:11,643 [wrapper] pilotpid: 1061290
[2025-12-17 17:21:11] 2025-12-17 16:21:11,644 [wrapper] Pilot exit status: 0
[2025-12-17 17:21:11] 2025-12-17 16:21:11,648 [wrapper] pandaids: 6931737043
[2025-12-17 17:21:11] 2025-12-17 16:21:11,666 [wrapper] cleanup supervisor_pilot 1118623 1061291
[2025-12-17 17:21:11] 2025-12-17 16:21:11,667 [wrapper] Test setup, not cleaning
[2025-12-17 17:21:11] 2025-12-17 16:21:11,668 [wrapper] apfmon messages muted
[2025-12-17 17:21:11] 2025-12-17 16:21:11,669 [wrapper] ==== wrapper stdout END ====
[2025-12-17 17:21:11] 2025-12-17 16:21:11,670 [wrapper] ==== wrapper stderr END ====
[2025-12-17 17:21:11]  *** Error codes and diagnostics ***
[2025-12-17 17:21:11]     "exeErrorCode": 0,
[2025-12-17 17:21:11]     "exeErrorDiag": "",
[2025-12-17 17:21:11]     "pilotErrorCode": 0,
[2025-12-17 17:21:11]     "pilotErrorDiag": "",
[2025-12-17 17:21:11]  *** Listing of results directory ***
[2025-12-17 17:21:11] total 405572
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc    579449 Dec 17 04:48 pilot3.tar.gz
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc      5112 Dec 17 04:50 queuedata.json
[2025-12-17 17:21:11] -rwx------ 1 boinc boinc     36322 Dec 17 04:51 runpilot2-wrapper.sh
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc       100 Dec 17 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 17:21:11] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 16:48 run_atlas
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc       105 Dec 17 16:48 job.xml
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc 213886143 Dec 17 16:48 EVNT.47898779._000229.pool.root.1
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:48 start_atlas.sh
[2025-12-17 17:21:11] drwxrwx--x 2 boinc boinc        68 Dec 17 16:48 shared
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc    592389 Dec 17 16:48 input.tar.gz
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc      9189 Dec 17 16:48 init_data.xml
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:48 boinc_setup_complete
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc         0 Dec 17 16:48 boinc_lockfile
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc      2522 Dec 17 16:48 pandaJob.out
[2025-12-17 17:21:11] -rw------- 1 boinc boinc    987423 Dec 17 16:49 agis_schedconf.cvmfs.json
[2025-12-17 17:21:11] -rw------- 1 boinc boinc   1516240 Dec 17 16:49 agis_ddmendpoints.agis.ALL.json
[2025-12-17 17:21:11] drwx------ 5 boinc boinc      4096 Dec 17 16:49 pilot3
[2025-12-17 17:21:11] -rw------- 1 boinc boinc 196202552 Dec 17 17:19 HITS.47898782._005662.pool.root.1
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc       529 Dec 17 17:20 boinc_task_state.xml
[2025-12-17 17:21:11] -rw------- 1 boinc boinc      1028 Dec 17 17:20 memory_monitor_summary.json
[2025-12-17 17:21:11] -rw------- 1 boinc boinc    343329 Dec 17 17:20 log.47898782._005662.job.log.tgz.1
[2025-12-17 17:21:11] -rw------- 1 boinc boinc        95 Dec 17 17:20 pilot_heartbeat.json
[2025-12-17 17:21:11] -rw------- 1 boinc boinc      7786 Dec 17 17:20 heartbeat.json
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc        27 Dec 17 17:20 wrapper_checkpoint.txt
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc      8192 Dec 17 17:20 boinc_mmap_file
[2025-12-17 17:21:11] -rw------- 1 boinc boinc      4897 Dec 17 17:21 pilotlog.txt
[2025-12-17 17:21:11] -rw------- 1 boinc boinc    314302 Dec 17 17:21 log.47898782._005662.job.log.1
[2025-12-17 17:21:11] -rw------- 1 boinc boinc       357 Dec 17 17:21 output.list
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc       620 Dec 17 17:21 runtime_log
[2025-12-17 17:21:11] -rw------- 1 boinc boinc    675840 Dec 17 17:21 result.tar.gz
[2025-12-17 17:21:11] -rw------- 1 boinc boinc       638 Dec 17 17:21 w3QLDm1kxp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlLbKDmXVgiam.diag
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc      8765 Dec 17 17:21 runtime_log.err
[2025-12-17 17:21:11] -rw-r--r-- 1 boinc boinc     21557 Dec 17 17:21 stderr.txt
[2025-12-17 17:21:11] HITS file was successfully produced:
[2025-12-17 17:21:11] -rw------- 1 boinc boinc 196202552 Dec 17 17:19 shared/HITS.pool.root.1
[2025-12-17 17:21:11]  *** Contents of shared directory: ***
[2025-12-17 17:21:11] total 401740
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc 213886143 Dec 17 16:48 ATLAS.root_0
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc     15847 Dec 17 16:48 start_atlas.sh
[2025-12-17 17:21:11] -rw-r--r-- 2 boinc boinc    592389 Dec 17 16:48 input.tar.gz
[2025-12-17 17:21:11] -rw------- 1 boinc boinc 196202552 Dec 17 17:19 HITS.pool.root.1
[2025-12-17 17:21:11] -rw------- 1 boinc boinc    675840 Dec 17 17:21 result.tar.gz
17:21:13 (1057396): run_atlas exited; CPU time 19662.525098
17:21:13 (1057396): called boinc_finish(0)

</stderr_txt>
]]>

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