Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:42:46 (450795): wrapper (7.7.26015): starting
01:42:46 (450795): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 01:42:46] Arguments: --nthreads 4
[2025-12-18 01:42:46] Threads: 4
[2025-12-18 01:42:46] Checking for CVMFS
[2025-12-18 01:42:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 01:42:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 01:42:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 01:42:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 01:42:46] 2.9.2.0 2605775 6658 98580 154128 0 56 19565677 36864001 0 130560 0 5345326 99.991 238700 8641 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 01:42:46] CVMFS is ok
[2025-12-18 01:42:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 01:42:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 01:42:46] Further information can be found at the LHC@home message board.
[2025-12-18 01:42:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 01:42:46] Checking for apptainer binary...
[2025-12-18 01:42:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 01:42:46] Running /usr/bin/apptainer --version
[2025-12-18 01:42:46] apptainer version 1.4.1-1.1
[2025-12-18 01:42:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 01:42:46] thA334
[2025-12-18 01:42:46] apptainer works
[2025-12-18 01:42:46] Set ATHENA_PROC_NUMBER=4
[2025-12-18 01:42:46] Set ATHENA_CORE_NUMBER=4
[2025-12-18 01:42:46] Starting ATLAS job with PandaID=6932080374
[2025-12-18 01:42:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 03:19:16]  *** The last 200 lines of the pilot log: ***
[2025-12-18 03:19:16] 2025-12-18 02:18:43,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 03:19:16] 2025-12-18 02:18:43,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 03:19:16] 2025-12-18 02:18:43,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 03:19:16] 2025-12-18 02:18:43,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 03:19:16] 2025-12-18 02:18:43,580 | INFO     | job 6932080374 has completed (purged errors)
[2025-12-18 03:19:16] 2025-12-18 02:18:43,580 | INFO     | overall cleanup function is called
[2025-12-18 03:19:16] 2025-12-18 02:18:43,719 | INFO     | PID=454592 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-18 03:19:16] 2025-12-18 02:18:44,581 | INFO     | --- collectZombieJob: --- 10, [461162]
[2025-12-18 03:19:16] 2025-12-18 02:18:44,582 | INFO     | zombie collector waiting for pid 461162
[2025-12-18 03:19:16] 2025-12-18 02:18:44,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 03:19:16] 2025-12-18 02:18:44,582 | INFO     | collected zombie processes
[2025-12-18 03:19:16] 2025-12-18 02:18:44,582 | INFO     | will attempt to kill all subprocesses of pid=461162
[2025-12-18 03:19:16] 2025-12-18 02:18:44,625 | INFO     | process IDs to be killed: [461162] (in reverse order)
[2025-12-18 03:19:16] 2025-12-18 02:18:44,656 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 03:19:16] 2025-12-18 02:18:44,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 03:19:16] 2025-12-18 02:18:44,658 | INFO     | did not find any defunct processes belonging to 461162
[2025-12-18 03:19:16] 2025-12-18 02:18:44,659 | INFO     | did not find any defunct processes belonging to 461162
[2025-12-18 03:19:16] 2025-12-18 02:18:44,659 | INFO     | ready for new job
[2025-12-18 03:19:16] 2025-12-18 02:18:44,659 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 03:19:16] 2025-12-18 02:18:44,660 | INFO     | ***************************************
[2025-12-18 03:19:16] 2025-12-18 02:18:44,660 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 03:19:16] 2025-12-18 02:18:44,660 | INFO     | ***************************************
[2025-12-18 03:19:16] 2025-12-18 02:18:44,660 | INFO     | 
[2025-12-18 03:19:16] 2025-12-18 02:18:44,661 | INFO     | architecture information:
[2025-12-18 03:19:16] 2025-12-18 02:18:44,661 | INFO     | executing command: cat /etc/os-release
[2025-12-18 03:19:16] 2025-12-18 02:18:44,674 | INFO     | cat /etc/os-release:
[2025-12-18 03:19:16] NAME="CentOS Linux"
[2025-12-18 03:19:16] VERSION="7 (Core)"
[2025-12-18 03:19:16] ID="centos"
[2025-12-18 03:19:16] ID_LIKE="rhel fedora"
[2025-12-18 03:19:16] VERSION_ID="7"
[2025-12-18 03:19:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 03:19:16] ANSI_COLOR="0;31"
[2025-12-18 03:19:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 03:19:16] HOME_URL="https://www.centos.org/"
[2025-12-18 03:19:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 03:19:16] 
[2025-12-18 03:19:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 03:19:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 03:19:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 03:19:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 03:19:16] 
[2025-12-18 03:19:16] 2025-12-18 02:18:44,674 | INFO     | ***************************************
[2025-12-18 03:19:16] 2025-12-18 02:18:45,177 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 03:19:16] 2025-12-18 02:18:45,196 | INFO     | sufficient remaining disk space (240324182016 B)
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | INFO     | update_server=False
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 03:19:16] 2025-12-18 02:18:45,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 03:19:16] 2025-12-18 02:18:45,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 03:19:16] 2025-12-18 02:18:45,334 | INFO     | aborting loop
[2025-12-18 03:19:16] 2025-12-18 02:18:45,469 | INFO     | all payload control threads have been joined
[2025-12-18 03:19:16] 2025-12-18 02:18:45,555 | INFO     | all job control threads have been joined
[2025-12-18 03:19:16] 2025-12-18 02:18:45,685 | INFO     | all data control threads have been joined
[2025-12-18 03:19:16] 2025-12-18 02:18:46,203 | INFO     | [job] queue monitor thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,203 | INFO     | [job] retrieve thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,219 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,340 | INFO     | [job] job monitor thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,475 | INFO     | [payload] control thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,560 | INFO     | [data] copytool_in thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,561 | INFO     | [job] control thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,691 | INFO     | [data] control thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:46,821 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:47,094 | INFO     | [payload] failed_post thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:47,204 | INFO     | [data] copytool_out thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:47,605 | INFO     | [job] validate thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:47,667 | INFO     | [payload] validate_post thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:47,671 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:48,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 03:19:16] 2025-12-18 02:18:52,185 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:18:55,728 | INFO     | job.realtimelogging is not enabled
[2025-12-18 03:19:16] 2025-12-18 02:18:56,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 03:19:16] 2025-12-18 02:19:00,789 | INFO     | [monitor] cgroup control has ended
[2025-12-18 03:19:16] 2025-12-18 02:19:02,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425289721664)>', '<ExcThread(monitor, started 140424786192128)>']
[2025-12-18 03:19:16] 2025-12-18 02:19:07,753 | INFO     | all workflow threads have been joined
[2025-12-18 03:19:16] 2025-12-18 02:19:07,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 03:19:16] 2025-12-18 02:19:07,754 | INFO     | traces error code: 0
[2025-12-18 03:19:16] 2025-12-18 02:19:07,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | INFO     | PID=454592 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 03:19:16] 2025-12-18 02:19:15,862 | INFO     | [monitor] control thread has ended
[2025-12-18 03:19:16] 2025-12-18 02:19:15,926 [wrapper] ==== pilot stdout END ====
[2025-12-18 03:19:16] 2025-12-18 02:19:15,930 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 03:19:16] 2025-12-18 02:19:15,933 [wrapper] pilotpid: 454592
[2025-12-18 03:19:16] 2025-12-18 02:19:15,937 [wrapper] Pilot exit status: 0
[2025-12-18 03:19:16] 2025-12-18 02:19:15,949 [wrapper] pandaids: 6932080374
[2025-12-18 03:19:16] 2025-12-18 02:19:15,969 [wrapper] cleanup supervisor_pilot  473502 454593
[2025-12-18 03:19:16] 2025-12-18 02:19:15,973 [wrapper] Test setup, not cleaning
[2025-12-18 03:19:16] 2025-12-18 02:19:15,976 [wrapper] apfmon messages muted
[2025-12-18 03:19:16] 2025-12-18 02:19:15,980 [wrapper] ==== wrapper stdout END ====
[2025-12-18 03:19:16] 2025-12-18 02:19:15,983 [wrapper] ==== wrapper stderr END ====
[2025-12-18 03:19:16]  *** Error codes and diagnostics ***
[2025-12-18 03:19:16]     "exeErrorCode": 0,
[2025-12-18 03:19:16]     "exeErrorDiag": "",
[2025-12-18 03:19:16]     "pilotErrorCode": 0,
[2025-12-18 03:19:16]     "pilotErrorDiag": "",
[2025-12-18 03:19:16]  *** Listing of results directory ***
[2025-12-18 03:19:16] total 403796
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc    579449 Dec 17 04:48 pilot3.tar.gz
[2025-12-18 03:19:16] -rwx------ 1 boinc boinc     36322 Dec 17 04:49 runpilot2-wrapper.sh
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc      5112 Dec 17 04:50 queuedata.json
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc       100 Dec 18 01:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 03:19:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 01:42 run_atlas
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc       105 Dec 18 01:42 job.xml
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc 198768930 Dec 18 01:42 EVNT.47905888._000022.pool.root.1
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc    592377 Dec 18 01:42 input.tar.gz
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc     15847 Dec 18 01:42 start_atlas.sh
[2025-12-18 03:19:16] drwxrwx--x 2 boinc boinc      4096 Dec 18 01:42 shared
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc         0 Dec 18 01:42 boinc_setup_complete
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc      6368 Dec 18 01:42 init_data.xml
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc         0 Dec 18 01:42 boinc_lockfile
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc      2445 Dec 18 01:42 pandaJob.out
[2025-12-18 03:19:16] -rw------- 1 boinc boinc    988134 Dec 18 01:42 agis_schedconf.cvmfs.json
[2025-12-18 03:19:16] -rw------- 1 boinc boinc   1516240 Dec 18 01:42 agis_ddmendpoints.agis.ALL.json
[2025-12-18 03:19:16] drwx------ 5 boinc boinc      4096 Dec 18 01:42 pilot3
[2025-12-18 03:19:16] -rw------- 1 boinc boinc 208589479 Dec 18 03:18 HITS.47905890._000586.pool.root.1
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc       529 Dec 18 03:18 boinc_task_state.xml
[2025-12-18 03:19:16] -rw------- 1 boinc boinc        95 Dec 18 03:18 pilot_heartbeat.json
[2025-12-18 03:19:16] -rw------- 1 boinc boinc      1021 Dec 18 03:18 memory_monitor_summary.json
[2025-12-18 03:19:16] -rw------- 1 boinc boinc    278364 Dec 18 03:18 log.47905890._000586.job.log.tgz.1
[2025-12-18 03:19:16] -rw------- 1 boinc boinc      7751 Dec 18 03:18 heartbeat.json
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc      8192 Dec 18 03:18 boinc_mmap_file
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc        27 Dec 18 03:18 wrapper_checkpoint.txt
[2025-12-18 03:19:16] -rw------- 1 boinc boinc       746 Dec 18 03:19 pilotlog.txt
[2025-12-18 03:19:16] -rw------- 1 boinc boinc    835261 Dec 18 03:19 log.47905890._000586.job.log.1
[2025-12-18 03:19:16] -rw------- 1 boinc boinc       357 Dec 18 03:19 output.list
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc       620 Dec 18 03:19 runtime_log
[2025-12-18 03:19:16] -rw------- 1 boinc boinc   1136640 Dec 18 03:19 result.tar.gz
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc      8897 Dec 18 03:19 runtime_log.err
[2025-12-18 03:19:16] -rw------- 1 boinc boinc       658 Dec 18 03:19 3woLDm4ixp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXJbKDmiO38En.diag
[2025-12-18 03:19:16] -rw-r--r-- 1 boinc boinc     11520 Dec 18 03:19 stderr.txt
[2025-12-18 03:19:16] HITS file was successfully produced:
[2025-12-18 03:19:16] -rw------- 1 boinc boinc 208589479 Dec 18 03:18 shared/HITS.pool.root.1
[2025-12-18 03:19:16]  *** Contents of shared directory: ***
[2025-12-18 03:19:16] total 399532
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc 198768930 Dec 18 01:42 ATLAS.root_0
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc    592377 Dec 18 01:42 input.tar.gz
[2025-12-18 03:19:16] -rw-r--r-- 2 boinc boinc     15847 Dec 18 01:42 start_atlas.sh
[2025-12-18 03:19:16] -rw------- 1 boinc boinc 208589479 Dec 18 03:18 HITS.pool.root.1
[2025-12-18 03:19:16] -rw------- 1 boinc boinc   1136640 Dec 18 03:19 result.tar.gz
03:19:17 (450795): run_atlas exited; CPU time 21862.951886
03:19:17 (450795): called boinc_finish(0)

</stderr_txt>
]]>

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