Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
23:26:40 (689617): wrapper (7.7.26015): starting
23:26:40 (689617): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 23:26:40] Arguments: --nthreads 4
[2025-12-17 23:26:40] Threads: 4
[2025-12-17 23:26:40] Checking for CVMFS
[2025-12-17 23:26:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 23:26:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 23:26:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 23:26:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 23:26:41] 2.13.1.0 45898 5866 105900 154125 0 57 7203739 10240000 1822 130560 0 11510013 99.996 217470 279 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 23:26:41] CVMFS is ok
[2025-12-17 23:26:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 23:26:41] Checking for apptainer binary...
[2025-12-17 23:26:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 23:26:41] Running /usr/bin/apptainer --version
[2025-12-17 23:26:41] apptainer version 1.4.4
[2025-12-17 23:26:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 23:26:42] ellievl
[2025-12-17 23:26:42] apptainer works
[2025-12-17 23:26:42] Set ATHENA_PROC_NUMBER=4
[2025-12-17 23:26:42] Set ATHENA_CORE_NUMBER=4
[2025-12-17 23:26:42] Starting ATLAS job with PandaID=6932341657
[2025-12-17 23:26:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 01:03:14]  *** The last 200 lines of the pilot log: ***
[2025-12-18 01:03:14]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932341657/log.47886933._008924.job.log.tgz.1
[2025-12-18 01:03:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/25/log.47886933._008924.job.log.tgz.1
[2025-12-18 01:03:14]  workdir=None
[2025-12-18 01:03:14] ]
[2025-12-18 01:03:14] 2025-12-18 00:02:16,194 | INFO     | transferring file log.47886933._008924.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932341657/log.47886933._008924.job.log.tgz.1 to /var/li
[2025-12-18 01:03:14] 2025-12-18 00:02:16,195 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932341657/log.47886933._008924.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-18 01:03:14] 2025-12-18 00:02:16,223 | INFO     | adding to output.list: log.47886933._008924.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/25/log.47886933._008924.job.log.tg
[2025-12-18 01:03:14] 2025-12-18 00:02:16,225 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 01:03:14] 2025-12-18 00:02:16,225 | INFO     | summary of transferred files:
[2025-12-18 01:03:14] 2025-12-18 00:02:16,225 | INFO     |  -- lfn=log.47886933._008924.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 01:03:14] 2025-12-18 00:02:16,225 | INFO     | stage-out finished correctly
[2025-12-18 01:03:14] 2025-12-18 00:02:17,797 | INFO     | monitor loop #424: job 0:6932341657 is in state 'finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:17,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 01:03:14] 2025-12-18 00:02:18,115 | INFO     | time since job start (5718s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:19,605 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 01:03:14] 2025-12-18 00:02:20,121 | INFO     | time since job start (5720s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:20,302 | INFO     | monitor loop #425: job 0:6932341657 is in state 'finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:20,302 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 01:03:14] 2025-12-18 00:02:20,762 | INFO     | job 6932341657 has state=finished
[2025-12-18 01:03:14] 2025-12-18 00:02:20,762 | INFO     | preparing for final server update for job 6932341657 in state='finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:20,763 | INFO     | this job has now completed (state=finished)
[2025-12-18 01:03:14] 2025-12-18 00:02:20,763 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 01:03:14] 2025-12-18 00:02:20,763 | INFO     | log transfer has been attempted: DONE
[2025-12-18 01:03:14] 2025-12-18 00:02:20,763 | INFO     | job 6932341657 has finished - writing final server update
[2025-12-18 01:03:14] 2025-12-18 00:02:20,764 | INFO     | total number of processed events: 400 (read)
[2025-12-18 01:03:14] 2025-12-18 00:02:20,765 | INFO     | executing command: lscpu
[2025-12-18 01:03:14] 2025-12-18 00:02:20,813 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 01:03:14] 2025-12-18 00:02:22,128 | INFO     | time since job start (5722s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:22,807 | INFO     | monitor loop #426: job 0:6932341657 is in state 'finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:22,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 01:03:14] 2025-12-18 00:02:24,135 | INFO     | time since job start (5724s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:25,311 | INFO     | monitor loop #427: job 0:6932341657 is in state 'finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:25,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 01:03:14] 2025-12-18 00:02:26,142 | INFO     | time since job start (5726s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:27,815 | INFO     | monitor loop #428: job 0:6932341657 is in state 'finished'
[2025-12-18 01:03:14] 2025-12-18 00:02:27,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,149 | INFO     | time since job start (5728s) is within the limit (174528.0s)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,577 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 01:03:14] 2025-12-18 00:02:28,578 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.0359999999987
[2025-12-18 01:03:14] 2025-12-18 00:02:28,581 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932341657/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,581 | INFO     | extracted standard info from prmon json
[2025-12-18 01:03:14] 2025-12-18 00:02:28,581 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 01:03:14] 2025-12-18 00:02:28,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 01:03:14] 2025-12-18 00:02:28,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 01:03:14] 2025-12-18 00:02:28,582 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | fitting pss+swap vs Time
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | sum of square deviations: 204163828.0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | sum of deviations: -22289850484.999996
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | mean x: 1766013387.0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | mean y: 2482919.4482758623
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | intersect: 192809282911.16098
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | chi2: 0.0882630966013633
[2025-12-18 01:03:14] 2025-12-18 00:02:28,584 | INFO     | current memory leak: -109.18 B/s (using 87 data points, chi2=0.09)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | ..............................
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . Timing measurements:
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . get job = 0 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . initial setup = 2 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . payload setup = 10 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . stage-in = 0 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . payload execution = 5681 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . stage-out = 0 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | . log creation = 0 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,585 | INFO     | ..............................
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | 
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | job summary report
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | --------------------------------------------------
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | PanDA job id: 6932341657
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | task id: 47886933
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | errors: (none)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,910 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | pilot state: finished 
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | transexitcode: 0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | exeerrorcode: 0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | exeerrordiag: 
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | exitcode: 0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | exitmsg: OK
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | cpuconsumptiontime: 21679 s
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | nevents: 400
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | neventsw: 0
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | pid: 700123
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | pgrp: 700123
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | corecount: 4
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | event service: False
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | sizes: {0: 2283977, 8: 2284239, 11: 2284267, 5696: 2311045, 5697: 2320071, 5701: 2320127, 5710: 2320449}
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | --------------------------------------------------
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | 
[2025-12-18 01:03:14] 2025-12-18 00:02:28,911 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-12-18 01:03:14] 2025-12-18 00:02:28,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,949 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 01:03:14] 2025-12-18 00:02:28,951 | INFO     | job 6932341657 has completed (purged errors)
[2025-12-18 01:03:14] 2025-12-18 00:02:28,951 | INFO     | overall cleanup function is called
[2025-12-18 01:03:14] 2025-12-18 00:02:29,959 | INFO     | --- collectZombieJob: --- 10, [700123]
[2025-12-18 01:03:14] 2025-12-18 00:02:29,959 | INFO     | zombie collector waiting for pid 700123
[2025-12-18 01:03:14] 2025-12-18 00:02:29,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 01:03:14] 2025-12-18 00:02:29,960 | INFO     | collected zombie processes
[2025-12-18 01:03:14] 2025-12-18 00:02:29,960 | INFO     | will attempt to kill all subprocesses of pid=700123
[2025-12-18 01:03:14] 2025-12-18 00:02:30,191 | INFO     | process IDs to be killed: [700123] (in reverse order)
[2025-12-18 01:03:14] 2025-12-18 00:02:30,285 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 01:03:14] 2025-12-18 00:02:30,286 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 01:03:14] 2025-12-18 00:02:30,292 | INFO     | did not find any defunct processes belonging to 700123
[2025-12-18 01:03:14] 2025-12-18 00:02:30,297 | INFO     | did not find any defunct processes belonging to 700123
[2025-12-18 01:03:14] 2025-12-18 00:02:30,298 | INFO     | ready for new job
[2025-12-18 01:03:14] 2025-12-18 00:02:30,298 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 01:03:14] 2025-12-18 00:02:30,300 | INFO     | ***************************************
[2025-12-18 01:03:14] 2025-12-18 00:02:30,300 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 01:03:14] 2025-12-18 00:02:30,300 | INFO     | ***************************************
[2025-12-18 01:03:14] 2025-12-18 00:02:30,300 | INFO     | 
[2025-12-18 01:03:14] 2025-12-18 00:02:30,301 | INFO     | pilot is running in a VM
[2025-12-18 01:03:14] 2025-12-18 00:02:30,301 | INFO     | architecture information:
[2025-12-18 01:03:14] 2025-12-18 00:02:30,301 | INFO     | executing command: cat /etc/os-release
[2025-12-18 01:03:14] 2025-12-18 00:02:30,322 | INFO     | cat /etc/os-release:
[2025-12-18 01:03:14] NAME="CentOS Linux"
[2025-12-18 01:03:14] VERSION="7 (Core)"
[2025-12-18 01:03:14] ID="centos"
[2025-12-18 01:03:14] ID_LIKE="rhel fedora"
[2025-12-18 01:03:14] VERSION_ID="7"
[2025-12-18 01:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 01:03:14] ANSI_COLOR="0;31"
[2025-12-18 01:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 01:03:14] HOME_URL="https://www.centos.org/"
[2025-12-18 01:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 01:03:14] 
[2025-12-18 01:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 01:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 01:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 01:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 01:03:14] 
[2025-12-18 01:03:14] 2025-12-18 00:02:30,323 | INFO     | ***************************************
[2025-12-18 01:03:14] 2025-12-18 00:02:30,826 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-18 01:03:14] 2025-12-18 00:02:30,849 | INFO     | sufficient remaining disk space (56745787392 B)
[2025-12-18 01:03:14] 2025-12-18 00:02:30,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 01:03:14] 2025-12-18 00:02:30,850 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 01:03:14] 2025-12-18 00:02:30,850 | INFO     | update_server=False
[2025-12-18 01:03:14] 2025-12-18 00:02:30,850 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 01:03:14] 2025-12-18 00:02:30,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 01:03:14] 2025-12-18 00:02:31,065 | INFO     | all payload control threads have been joined
[2025-12-18 01:03:14] 2025-12-18 00:02:31,303 | INFO     | all data control threads have been joined
[2025-12-18 01:03:14] 2025-12-18 00:02:31,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 01:03:14] 2025-12-18 00:02:31,326 | INFO     | aborting loop
[2025-12-18 01:03:14] 2025-12-18 00:02:31,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 01:03:14] 2025-12-18 00:02:31,856 | INFO     | [job] retrieve thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,019 | INFO     | [payload] failed_post thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,064 | INFO     | all job control threads have been joined
[2025-12-18 01:03:14] 2025-12-18 00:02:32,071 | INFO     | [payload] control thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,117 | INFO     | [data] copytool_in thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,309 | INFO     | [data] control thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,331 | INFO     | [job] job monitor thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,546 | INFO     | [payload] validate_post thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,995 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:32,998 | INFO     | [job] validate thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:33,020 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:33,069 | INFO     | [job] control thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:33,196 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:33,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 01:03:14] 2025-12-18 00:02:33,805 | INFO     | [data] copytool_out thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:34,667 | INFO     | [job] queue monitor thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:02:34,858 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 01:03:14] 2025-12-18 00:03:01,502 | INFO     | PID=693475 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-18 01:03:14] 2025-12-18 00:03:01,502 | INFO     | .. there are 3 such processes running
[2025-12-18 01:03:14] 2025-12-18 00:03:01,503 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 01:03:14] 2025-12-18 00:03:01,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 01:03:14] 2025-12-18 00:03:01,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 01:03:14] 2025-12-18 00:03:07,232 | INFO     | [monitor] cgroup control has ended
[2025-12-18 01:03:14] 2025-12-18 00:03:09,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124376727029568)>', '<ExcThread(monitor, started 124375793653504)>']
[2025-12-18 01:03:14] 2025-12-18 00:03:09,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 01:03:14] 2025-12-18 00:03:09,546 | INFO     | [monitor] control thread has ended
[2025-12-18 01:03:14] 2025-12-18 00:03:14,322 | INFO     | all workflow threads have been joined
[2025-12-18 01:03:14] 2025-12-18 00:03:14,322 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 01:03:14] 2025-12-18 00:03:14,322 | INFO     | traces error code: 0
[2025-12-18 01:03:14] 2025-12-18 00:03:14,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 01:03:14] 2025-12-18 00:03:14,429 [wrapper] ==== pilot stdout END ====
[2025-12-18 01:03:14] 2025-12-18 00:03:14,435 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 01:03:14] 2025-12-18 00:03:14,442 [wrapper] pilotpid: 693475
[2025-12-18 01:03:14] 2025-12-18 00:03:14,448 [wrapper] Pilot exit status: 0
[2025-12-18 01:03:14] 2025-12-18 00:03:14,471 [wrapper] pandaids: 6932341657
[2025-12-18 01:03:14] 2025-12-18 00:03:14,543 [wrapper] cleanup supervisor_pilot  769836 693476
[2025-12-18 01:03:14] 2025-12-18 00:03:14,549 [wrapper] Test setup, not cleaning
[2025-12-18 01:03:14] 2025-12-18 00:03:14,557 [wrapper] apfmon messages muted
[2025-12-18 01:03:14] 2025-12-18 00:03:14,563 [wrapper] ==== wrapper stdout END ====
[2025-12-18 01:03:14] 2025-12-18 00:03:14,569 [wrapper] ==== wrapper stderr END ====
[2025-12-18 01:03:14]  *** Error codes and diagnostics ***
[2025-12-18 01:03:14]     "exeErrorCode": 0,
[2025-12-18 01:03:14]     "exeErrorDiag": "",
[2025-12-18 01:03:14]     "pilotErrorCode": 0,
[2025-12-18 01:03:14]     "pilotErrorDiag": "",
[2025-12-18 01:03:14]  *** Listing of results directory ***
[2025-12-18 01:03:14] insgesamt 340508
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc    579449 Dez 17 09:37 pilot3.tar.gz
[2025-12-18 01:03:14] -rwx------ 1 yeti boinc     36322 Dez 17 09:41 runpilot2-wrapper.sh
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc      5112 Dez 17 09:42 queuedata.json
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc       100 Dez 17 23:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 01:03:14] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 23:26 run_atlas
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc       105 Dez 17 23:26 job.xml
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc 195031297 Dez 17 23:26 EVNT.47886929._000363.pool.root.1
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc     15847 Dez 17 23:26 start_atlas.sh
[2025-12-18 01:03:14] drwxrwx--x 2 yeti boinc      4096 Dez 17 23:26 shared
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc    592401 Dez 17 23:26 input.tar.gz
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc      6556 Dez 17 23:26 init_data.xml
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc         0 Dez 17 23:26 boinc_setup_complete
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc         0 Dez 17 23:26 boinc_lockfile
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc      2512 Dez 17 23:26 pandaJob.out
[2025-12-18 01:03:14] -rw------- 1 yeti boinc        52 Dez 17 23:26 setup.sh.local
[2025-12-18 01:03:14] -rw------- 1 yeti boinc    988134 Dez 17 23:26 agis_schedconf.cvmfs.json
[2025-12-18 01:03:14] -rw------- 1 yeti boinc   1516240 Dez 17 23:26 agis_ddmendpoints.agis.ALL.json
[2025-12-18 01:03:14] drwx------ 5 yeti boinc      4096 Dez 17 23:27 pilot3
[2025-12-18 01:03:14] -rw------- 1 yeti boinc 147515451 Dez 18 01:01 HITS.47886933._008924.pool.root.1
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc       529 Dez 18 01:01 boinc_task_state.xml
[2025-12-18 01:03:14] -rw------- 1 yeti boinc      1015 Dez 18 01:02 memory_monitor_summary.json
[2025-12-18 01:03:14] -rw------- 1 yeti boinc    266491 Dez 18 01:02 log.47886933._008924.job.log.tgz.1
[2025-12-18 01:03:14] -rw------- 1 yeti boinc      7729 Dez 18 01:02 heartbeat.json
[2025-12-18 01:03:14] -rw------- 1 yeti boinc        95 Dez 18 01:03 pilot_heartbeat.json
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc      8192 Dez 18 01:03 boinc_mmap_file
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc        27 Dez 18 01:03 wrapper_checkpoint.txt
[2025-12-18 01:03:14] -rw------- 1 yeti boinc      4898 Dez 18 01:03 pilotlog.txt
[2025-12-18 01:03:14] -rw------- 1 yeti boinc    840860 Dez 18 01:03 log.47886933._008924.job.log.1
[2025-12-18 01:03:14] -rw------- 1 yeti boinc       357 Dez 18 01:03 output.list
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc       620 Dez 18 01:03 runtime_log
[2025-12-18 01:03:14] -rw------- 1 yeti boinc   1126400 Dez 18 01:03 result.tar.gz
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc      9537 Dez 18 01:03 runtime_log.err
[2025-12-18 01:03:14] -rw------- 1 yeti boinc       637 Dez 18 01:03 jT8MDmuG2p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyIXKDm5WUOLm.diag
[2025-12-18 01:03:14] -rw-r--r-- 1 yeti boinc     22051 Dez 18 01:03 stderr.txt
[2025-12-18 01:03:14] HITS file was successfully produced:
[2025-12-18 01:03:14] -rw------- 1 yeti boinc 147515451 Dez 18 01:01 shared/HITS.pool.root.1
[2025-12-18 01:03:14]  *** Contents of shared directory: ***
[2025-12-18 01:03:14] insgesamt 336224
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc 195031297 Dez 17 23:26 ATLAS.root_0
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc     15847 Dez 17 23:26 start_atlas.sh
[2025-12-18 01:03:14] -rw-r--r-- 2 yeti boinc    592401 Dez 17 23:26 input.tar.gz
[2025-12-18 01:03:14] -rw------- 1 yeti boinc 147515451 Dez 18 01:01 HITS.pool.root.1
[2025-12-18 01:03:14] -rw------- 1 yeti boinc   1126400 Dez 18 01:03 result.tar.gz
01:03:16 (689617): run_atlas exited; CPU time 21920.041175
01:03:16 (689617): called boinc_finish(0)

</stderr_txt>
]]>

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