Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:11:01 (847953): wrapper (7.7.26015): starting
15:11:01 (847953): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 15:11:01] Arguments: --nthreads 12
[2025-12-17 15:11:01] Threads: 12
[2025-12-17 15:11:01] Checking for CVMFS
[2025-12-17 15:11:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 15:11:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 15:11:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 15:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 15:11:01] 2.13.3.0 583647 112 54744 154112 0 188 2983570 4096001 1858 130560 0 740614 99.997 4226 397 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-17 15:11:01] CVMFS is ok
[2025-12-17 15:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 15:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 15:11:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-17 15:11:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-17 15:11:01] Further information can be found at the LHC@home message board.
[2025-12-17 15:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 15:11:01] Checking for apptainer binary...
[2025-12-17 15:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 15:11:01] Running /usr/bin/apptainer --version
[2025-12-17 15:11:01] apptainer version 1.4.5-2.el10_1
[2025-12-17 15:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 15:11:01] OSIRIS
[2025-12-17 15:11:01] apptainer works
[2025-12-17 15:11:01] Set ATHENA_PROC_NUMBER=12
[2025-12-17 15:11:01] Set ATHENA_CORE_NUMBER=12
[2025-12-17 15:11:01] Starting ATLAS job with PandaID=6932315089
[2025-12-17 15:11:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/50 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 15:34:31]  *** The last 200 lines of the pilot log: ***
[2025-12-17 15:34:31]  protocol_id=None
[2025-12-17 15:34:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 15:34:31]  replicas=None
[2025-12-17 15:34:31]  scope=mc23_13p6TeV
[2025-12-17 15:34:31]  status=None
[2025-12-17 15:34:31]  status_code=0
[2025-12-17 15:34:31]  storage_token=
[2025-12-17 15:34:31]  surl=/var/lib/boinc/slots/50/PanDA_Pilot-6932315089/log.47886933._008667.job.log.tgz.1
[2025-12-17 15:34:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/f8/log.47886933._008667.job.log.tgz.1
[2025-12-17 15:34:31]  workdir=None
[2025-12-17 15:34:31] ]
[2025-12-17 15:34:31] 2025-12-17 14:33:53,410 | INFO     | transferring file log.47886933._008667.job.log.tgz.1 from /var/lib/boinc/slots/50/PanDA_Pilot-6932315089/log.47886933._008667.job.log.tgz.1 to /var/lib/boinc/slots
[2025-12-17 15:34:31] 2025-12-17 14:33:53,410 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/50/PanDA_Pilot-6932315089/log.47886933._008667.job.log.tgz.1 /var/lib/boinc/slots/50/log.47886933._008667.j
[2025-12-17 15:34:31] 2025-12-17 14:33:53,419 | INFO     | adding to output.list: log.47886933._008667.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/f8/log.47886933._008667.job.log.tg
[2025-12-17 15:34:31] 2025-12-17 14:33:53,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 15:34:31] 2025-12-17 14:33:53,420 | INFO     | summary of transferred files:
[2025-12-17 15:34:31] 2025-12-17 14:33:53,420 | INFO     |  -- lfn=log.47886933._008667.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 15:34:31] 2025-12-17 14:33:53,420 | INFO     | stage-out finished correctly
[2025-12-17 15:34:31] 2025-12-17 14:33:54,087 | INFO     | time since job start (1369s) is within the limit (174528.0s)
[2025-12-17 15:34:31] 2025-12-17 14:33:56,093 | INFO     | time since job start (1371s) is within the limit (174528.0s)
[2025-12-17 15:34:31] 2025-12-17 14:33:56,611 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 15:34:31] 2025-12-17 14:33:57,463 | WARNING  | process 858594 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 15:34:31] 2025-12-17 14:33:57,463 | INFO     | using path: /var/lib/boinc/slots/50/PanDA_Pilot-6932315089/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:34:31] 2025-12-17 14:33:57,515 | INFO     | number of running child processes to parent process 858594: 1
[2025-12-17 15:34:31] 2025-12-17 14:33:57,516 | INFO     | maximum number of monitored processes: 6
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | job 6932315089 has state=finished
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | preparing for final server update for job 6932315089 in state='finished'
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | this job has now completed (state=finished)
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | log transfer has been attempted: DONE
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | job 6932315089 has finished - writing final server update
[2025-12-17 15:34:31] 2025-12-17 14:33:57,713 | INFO     | total number of processed events: 400 (read)
[2025-12-17 15:34:31] 2025-12-17 14:33:57,714 | INFO     | executing command: lscpu
[2025-12-17 15:34:31] 2025-12-17 14:33:57,729 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 15:34:31] 2025-12-17 14:33:58,095 | INFO     | time since job start (1373s) is within the limit (174528.0s)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,168 | INFO     | PID=851848 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 15:34:31] 2025-12-17 14:33:59,168 | INFO     | .. there are 4 such processes running
[2025-12-17 15:34:31] 2025-12-17 14:33:59,231 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 15:34:31] 2025-12-17 14:33:59,233 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4259.124250000001
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | INFO     | using path: /var/lib/boinc/slots/50/PanDA_Pilot-6932315089/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | INFO     | extracted standard info from prmon json
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 15:34:31] 2025-12-17 14:33:59,236 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | fitting pss+swap vs Time
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | sum of square deviations: 1265140.0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | sum of deviations: 21136256.0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | mean x: 1765981444.5
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | mean y: 2780535.5
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | intersect: -29500860090.993343
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | chi2: 0.0002448091385745503
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | current memory leak: 16.71 B/s (using 16 data points, chi2=0.00)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | could have reported an average CPU frequency of 4656 MHz (4 samples)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | ..............................
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . Timing measurements:
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . get job = 0 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . initial setup = 1 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . payload setup = 2 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . stage-in = 0 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . payload execution = 1349 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . stage-out = 0 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | . log creation = 0 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,237 | INFO     | ..............................
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | 
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | job summary report
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | --------------------------------------------------
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | PanDA job id: 6932315089
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | task id: 47886933
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | errors: (none)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | pilot state: finished 
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | transexitcode: 0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | exeerrorcode: 0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | exeerrordiag: 
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | exitcode: 0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | exitmsg: OK
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | cpuconsumptiontime: 14062 s
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | nevents: 400
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | neventsw: 0
[2025-12-17 15:34:31] 2025-12-17 14:33:59,272 | INFO     | pid: 858594
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | pgrp: 858594
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | corecount: 12
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | event service: False
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | sizes: {0: 2283966, 2: 2284228, 10: 2284256, 1355: 2317956, 1359: 2317956, 1361: 2318150}
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | --------------------------------------------------
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | 
[2025-12-17 15:34:31] 2025-12-17 14:33:59,273 | INFO     | executing command: ls -lF /var/lib/boinc/slots/50
[2025-12-17 15:34:31] 2025-12-17 14:33:59,281 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,281 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,281 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | job 6932315089 has completed (purged errors)
[2025-12-17 15:34:31] 2025-12-17 14:33:59,282 | INFO     | overall cleanup function is called
[2025-12-17 15:34:31] 2025-12-17 14:34:00,288 | INFO     | --- collectZombieJob: --- 10, [858594]
[2025-12-17 15:34:31] 2025-12-17 14:34:00,288 | INFO     | zombie collector waiting for pid 858594
[2025-12-17 15:34:31] 2025-12-17 14:34:00,288 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 15:34:31] 2025-12-17 14:34:00,288 | INFO     | collected zombie processes
[2025-12-17 15:34:31] 2025-12-17 14:34:00,288 | INFO     | will attempt to kill all subprocesses of pid=858594
[2025-12-17 15:34:31] 2025-12-17 14:34:00,341 | INFO     | process IDs to be killed: [858594] (in reverse order)
[2025-12-17 15:34:31] 2025-12-17 14:34:00,369 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 15:34:31] 2025-12-17 14:34:00,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 15:34:31] 2025-12-17 14:34:00,372 | INFO     | did not find any defunct processes belonging to 858594
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | did not find any defunct processes belonging to 858594
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | ready for new job
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | ***************************************
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | ***************************************
[2025-12-17 15:34:31] 2025-12-17 14:34:00,374 | INFO     | 
[2025-12-17 15:34:31] 2025-12-17 14:34:00,375 | INFO     | architecture information:
[2025-12-17 15:34:31] 2025-12-17 14:34:00,375 | INFO     | executing command: cat /etc/os-release
[2025-12-17 15:34:31] 2025-12-17 14:34:00,380 | INFO     | cat /etc/os-release:
[2025-12-17 15:34:31] NAME="CentOS Linux"
[2025-12-17 15:34:31] VERSION="7 (Core)"
[2025-12-17 15:34:31] ID="centos"
[2025-12-17 15:34:31] ID_LIKE="rhel fedora"
[2025-12-17 15:34:31] VERSION_ID="7"
[2025-12-17 15:34:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 15:34:31] ANSI_COLOR="0;31"
[2025-12-17 15:34:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 15:34:31] HOME_URL="https://www.centos.org/"
[2025-12-17 15:34:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 15:34:31] 
[2025-12-17 15:34:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 15:34:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 15:34:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 15:34:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 15:34:31] 
[2025-12-17 15:34:31] 2025-12-17 14:34:00,380 | INFO     | ***************************************
[2025-12-17 15:34:31] 2025-12-17 14:34:00,883 | INFO     | executing command: df -mP /var/lib/boinc/slots/50
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | INFO     | sufficient remaining disk space (1265638572032 B)
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | INFO     | update_server=False
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 15:34:31] 2025-12-17 14:34:00,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:34:31] 2025-12-17 14:34:01,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:34:31] 2025-12-17 14:34:01,024 | INFO     | aborting loop
[2025-12-17 15:34:31] 2025-12-17 14:34:01,135 | INFO     | all data control threads have been joined
[2025-12-17 15:34:31] 2025-12-17 14:34:01,308 | INFO     | all payload control threads have been joined
[2025-12-17 15:34:31] 2025-12-17 14:34:01,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 15:34:31] 2025-12-17 14:34:01,895 | INFO     | [job] retrieve thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:01,895 | INFO     | [job] queue monitor thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:02,029 | INFO     | [job] job monitor thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:02,137 | INFO     | [data] control thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:02,163 | INFO     | [payload] validate_post thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:02,313 | INFO     | [payload] control thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:02,504 | INFO     | all job control threads have been joined
[2025-12-17 15:34:31] 2025-12-17 14:34:02,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 15:34:31] 2025-12-17 14:34:02,927 | INFO     | [job] validate thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,000 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,009 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,097 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,229 | INFO     | [payload] failed_post thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,282 | INFO     | [data] copytool_in thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,468 | INFO     | [data] copytool_out thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:03,509 | INFO     | [job] control thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:06,656 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:07,473 | INFO     | [monitor] cgroup control has ended
[2025-12-17 15:34:31] 2025-12-17 14:34:11,573 | INFO     | job.realtimelogging is not enabled
[2025-12-17 15:34:31] 2025-12-17 14:34:12,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 15:34:31] 2025-12-17 14:34:13,256 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517328570176)>', '<ExcThread(monitor, started 140516549187328)>']
[2025-12-17 15:34:31] 2025-12-17 14:34:18,282 | INFO     | all workflow threads have been joined
[2025-12-17 15:34:31] 2025-12-17 14:34:18,282 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 15:34:31] 2025-12-17 14:34:18,282 | INFO     | traces error code: 0
[2025-12-17 15:34:31] 2025-12-17 14:34:18,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 15:34:31] 2025-12-17 14:34:31,306 | INFO     | PID=851848 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 15:34:31] 2025-12-17 14:34:31,307 | INFO     | .. there are 4 such processes running
[2025-12-17 15:34:31] 2025-12-17 14:34:31,308 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 15:34:31] 2025-12-17 14:34:31,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 15:34:31] 2025-12-17 14:34:31,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 15:34:31] 2025-12-17 14:34:31,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 15:34:31] 2025-12-17 14:34:31,308 | INFO     | [monitor] control thread has ended
[2025-12-17 15:34:31] 2025-12-17 14:34:31,375 [wrapper] ==== pilot stdout END ====
[2025-12-17 15:34:31] 2025-12-17 14:34:31,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 15:34:31] 2025-12-17 14:34:31,377 [wrapper] pilotpid: 851848
[2025-12-17 15:34:31] 2025-12-17 14:34:31,378 [wrapper] Pilot exit status: 0
[2025-12-17 15:34:31] 2025-12-17 14:34:31,381 [wrapper] pandaids: 6932315089
[2025-12-17 15:34:31] 2025-12-17 14:34:31,397 [wrapper] cleanup supervisor_pilot  902671 851849
[2025-12-17 15:34:31] 2025-12-17 14:34:31,398 [wrapper] Test setup, not cleaning
[2025-12-17 15:34:31] 2025-12-17 14:34:31,399 [wrapper] apfmon messages muted
[2025-12-17 15:34:31] 2025-12-17 14:34:31,400 [wrapper] ==== wrapper stdout END ====
[2025-12-17 15:34:31] 2025-12-17 14:34:31,400 [wrapper] ==== wrapper stderr END ====
[2025-12-17 15:34:31]  *** Error codes and diagnostics ***
[2025-12-17 15:34:31]     "exeErrorCode": 0,
[2025-12-17 15:34:31]     "exeErrorDiag": "",
[2025-12-17 15:34:31]     "pilotErrorCode": 0,
[2025-12-17 15:34:31]     "pilotErrorDiag": "",
[2025-12-17 15:34:31]  *** Listing of results directory ***
[2025-12-17 15:34:31] total 334380
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc    579449 Dec 17 09:37 pilot3.tar.gz
[2025-12-17 15:34:31] -rwx------ 1 boinc boinc     36322 Dec 17 09:37 runpilot2-wrapper.sh
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc      5112 Dec 17 09:38 queuedata.json
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc       100 Dec 17 15:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 15:34:31] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 15:11 run_atlas
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc       105 Dec 17 15:11 job.xml
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:11 start_atlas.sh
[2025-12-17 15:34:31] drwxrwx--x 2 boinc boinc        68 Dec 17 15:11 shared
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc    592400 Dec 17 15:11 input.tar.gz
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc      9190 Dec 17 15:11 init_data.xml
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc 194030008 Dec 17 15:11 EVNT.47886929._000352.pool.root.1
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:11 boinc_setup_complete
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:11 boinc_lockfile
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc      2513 Dec 17 15:11 pandaJob.out
[2025-12-17 15:34:31] -rw------- 1 boinc boinc    987423 Dec 17 15:11 agis_schedconf.cvmfs.json
[2025-12-17 15:34:31] -rw------- 1 boinc boinc   1516240 Dec 17 15:11 agis_ddmendpoints.agis.ALL.json
[2025-12-17 15:34:31] drwx------ 5 boinc boinc      4096 Dec 17 15:11 pilot3
[2025-12-17 15:34:31] -rw------- 1 boinc boinc 143289928 Dec 17 15:33 HITS.47886933._008667.pool.root.1
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc       529 Dec 17 15:33 boinc_task_state.xml
[2025-12-17 15:34:31] -rw------- 1 boinc boinc      1028 Dec 17 15:33 memory_monitor_summary.json
[2025-12-17 15:34:31] -rw------- 1 boinc boinc    351074 Dec 17 15:33 log.47886933._008667.job.log.tgz.1
[2025-12-17 15:34:31] -rw------- 1 boinc boinc      7781 Dec 17 15:33 heartbeat.json
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc        27 Dec 17 15:34 wrapper_checkpoint.txt
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc      8192 Dec 17 15:34 boinc_mmap_file
[2025-12-17 15:34:31] -rw------- 1 boinc boinc        95 Dec 17 15:34 pilot_heartbeat.json
[2025-12-17 15:34:31] -rw------- 1 boinc boinc       821 Dec 17 15:34 pilotlog.txt
[2025-12-17 15:34:31] -rw------- 1 boinc boinc    243317 Dec 17 15:34 log.47886933._008667.job.log.1
[2025-12-17 15:34:31] -rw------- 1 boinc boinc       357 Dec 17 15:34 output.list
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc       620 Dec 17 15:34 runtime_log
[2025-12-17 15:34:31] -rw------- 1 boinc boinc    614400 Dec 17 15:34 result.tar.gz
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc      8781 Dec 17 15:34 runtime_log.err
[2025-12-17 15:34:31] -rw------- 1 boinc boinc       637 Dec 17 15:34 K93MDmtD2p8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGgbKDmIe58vm.diag
[2025-12-17 15:34:31] -rw-r--r-- 1 boinc boinc     22033 Dec 17 15:34 stderr.txt
[2025-12-17 15:34:31] HITS file was successfully produced:
[2025-12-17 15:34:31] -rw------- 1 boinc boinc 143289928 Dec 17 15:33 shared/HITS.pool.root.1
[2025-12-17 15:34:31]  *** Contents of shared directory: ***
[2025-12-17 15:34:31] total 330612
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:11 start_atlas.sh
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc    592400 Dec 17 15:11 input.tar.gz
[2025-12-17 15:34:31] -rw-r--r-- 2 boinc boinc 194030008 Dec 17 15:11 ATLAS.root_0
[2025-12-17 15:34:31] -rw------- 1 boinc boinc 143289928 Dec 17 15:33 HITS.pool.root.1
[2025-12-17 15:34:31] -rw------- 1 boinc boinc    614400 Dec 17 15:34 result.tar.gz
15:34:33 (847953): run_atlas exited; CPU time 14068.265482
15:34:33 (847953): called boinc_finish(0)

</stderr_txt>
]]>

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