Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:16:58 (865443): wrapper (7.7.26015): starting
15:16:58 (865443): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 15:16:58] Arguments: --nthreads 12
[2025-12-17 15:16:58] Threads: 12
[2025-12-17 15:16:58] Checking for CVMFS
[2025-12-17 15:16:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 15:16:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 15:16:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 15:16:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 15:16:58] 2.13.3.0 583647 118 54760 154112 2 188 2983572 4096000 2787 130560 0 790350 99.997 4228 392 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-17 15:16:58] CVMFS is ok
[2025-12-17 15:16:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 15:16:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 15:16:58] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-17 15:16:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-17 15:16:58] Further information can be found at the LHC@home message board.
[2025-12-17 15:16:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 15:16:58] Checking for apptainer binary...
[2025-12-17 15:16:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 15:16:58] Running /usr/bin/apptainer --version
[2025-12-17 15:16:58] apptainer version 1.4.5-2.el10_1
[2025-12-17 15:16:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 15:16:58] OSIRIS
[2025-12-17 15:16:58] apptainer works
[2025-12-17 15:16:58] Set ATHENA_PROC_NUMBER=12
[2025-12-17 15:16:58] Set ATHENA_CORE_NUMBER=12
[2025-12-17 15:16:58] Starting ATLAS job with PandaID=6932316221
[2025-12-17 15:16:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 15:49:15]  *** The last 200 lines of the pilot log: ***
[2025-12-17 15:49:15]  protocol_id=None
[2025-12-17 15:49:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 15:49:15]  replicas=None
[2025-12-17 15:49:15]  scope=mc23_13p6TeV
[2025-12-17 15:49:15]  status=None
[2025-12-17 15:49:15]  status_code=0
[2025-12-17 15:49:15]  storage_token=
[2025-12-17 15:49:15]  surl=/var/lib/boinc/slots/6/PanDA_Pilot-6932316221/log.47905899._000253.job.log.tgz.1
[2025-12-17 15:49:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/87/log.47905899._000253.job.log.tgz.1
[2025-12-17 15:49:15]  workdir=None
[2025-12-17 15:49:15] ]
[2025-12-17 15:49:15] 2025-12-17 14:48:08,967 | INFO     | transferring file log.47905899._000253.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6932316221/log.47905899._000253.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-12-17 15:49:15] 2025-12-17 14:48:08,968 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6932316221/log.47905899._000253.job.log.tgz.1 /var/lib/boinc/slots/6/log.47905899._000253.job
[2025-12-17 15:49:15] 2025-12-17 14:48:08,977 | INFO     | adding to output.list: log.47905899._000253.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/87/log.47905899._000253.job.log.tg
[2025-12-17 15:49:15] 2025-12-17 14:48:08,977 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 15:49:15] 2025-12-17 14:48:08,977 | INFO     | summary of transferred files:
[2025-12-17 15:49:15] 2025-12-17 14:48:08,977 | INFO     |  -- lfn=log.47905899._000253.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 15:49:15] 2025-12-17 14:48:08,977 | INFO     | stage-out finished correctly
[2025-12-17 15:49:15] 2025-12-17 14:48:09,588 | INFO     | time since job start (1864s) is within the limit (174528.0s)
[2025-12-17 15:49:15] 2025-12-17 14:48:10,070 | INFO     | monitor loop #145: job 0:6932316221 is in state 'finished'
[2025-12-17 15:49:15] 2025-12-17 14:48:10,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:49:15] 2025-12-17 14:48:11,593 | INFO     | time since job start (1866s) is within the limit (174528.0s)
[2025-12-17 15:49:15] 2025-12-17 14:48:12,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 15:49:15] 2025-12-17 14:48:12,573 | INFO     | monitor loop #146: job 0:6932316221 is in state 'finished'
[2025-12-17 15:49:15] 2025-12-17 14:48:12,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:49:15] 2025-12-17 14:48:13,599 | INFO     | time since job start (1868s) is within the limit (174528.0s)
[2025-12-17 15:49:15] 2025-12-17 14:48:14,607 | INFO     | job 6932316221 has state=finished
[2025-12-17 15:49:15] 2025-12-17 14:48:14,607 | INFO     | preparing for final server update for job 6932316221 in state='finished'
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | this job has now completed (state=finished)
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | log transfer has been attempted: DONE
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | job 6932316221 has finished - writing final server update
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | total number of processed events: 400 (read)
[2025-12-17 15:49:15] 2025-12-17 14:48:14,608 | INFO     | executing command: lscpu
[2025-12-17 15:49:15] 2025-12-17 14:48:14,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 15:49:15] 2025-12-17 14:48:15,076 | INFO     | monitor loop #147: job 0:6932316221 is in state 'finished'
[2025-12-17 15:49:15] 2025-12-17 14:48:15,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 15:49:15] 2025-12-17 14:48:15,604 | INFO     | time since job start (1870s) is within the limit (174528.0s)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,193 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 15:49:15] 2025-12-17 14:48:16,195 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4694.594166666665
[2025-12-17 15:49:15] 2025-12-17 14:48:16,198 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6932316221/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,198 | INFO     | extracted standard info from prmon json
[2025-12-17 15:49:15] 2025-12-17 14:48:16,198 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 15:49:15] 2025-12-17 14:48:16,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | fitting pss+swap vs Time
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | sum of square deviations: 4279150.0
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | sum of deviations: 105027390.49999999
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | mean x: 1765982048.5
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | mean y: 2810924.9583333335
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | intersect: -43341424781.61877
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | chi2: 0.0007582079189889185
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | current memory leak: 24.54 B/s (using 24 data points, chi2=0.00)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,199 | INFO     | could have reported an average CPU frequency of 4742 MHz (5 samples)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | ..............................
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . Timing measurements:
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . get job = 0 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . initial setup = 1 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . payload setup = 1 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . stage-in = 0 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . payload execution = 1845 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . stage-out = 0 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | . log creation = 0 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,200 | INFO     | ..............................
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | 
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | job summary report
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | --------------------------------------------------
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | PanDA job id: 6932316221
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | task id: 47905899
[2025-12-17 15:49:15] 2025-12-17 14:48:16,275 | INFO     | errors: (none)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | pilot state: finished 
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | transexitcode: 0
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | exeerrorcode: 0
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | exeerrordiag: 
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | exitcode: 0
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | exitmsg: OK
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | cpuconsumptiontime: 19511 s
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | nevents: 400
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | neventsw: 0
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | pid: 876241
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | pgrp: 876241
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | corecount: 12
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | event service: False
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | sizes: {0: 2283915, 2: 2284177, 11: 2284205, 1850: 2309113, 1851: 2318166, 1854: 2318166, 1858: 2318520}
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | --------------------------------------------------
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | 
[2025-12-17 15:49:15] 2025-12-17 14:48:16,276 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-17 15:49:15] 2025-12-17 14:48:16,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | job 6932316221 has completed (purged errors)
[2025-12-17 15:49:15] 2025-12-17 14:48:16,287 | INFO     | overall cleanup function is called
[2025-12-17 15:49:15] 2025-12-17 14:48:17,293 | INFO     | --- collectZombieJob: --- 10, [876241]
[2025-12-17 15:49:15] 2025-12-17 14:48:17,293 | INFO     | zombie collector waiting for pid 876241
[2025-12-17 15:49:15] 2025-12-17 14:48:17,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 15:49:15] 2025-12-17 14:48:17,293 | INFO     | collected zombie processes
[2025-12-17 15:49:15] 2025-12-17 14:48:17,293 | INFO     | will attempt to kill all subprocesses of pid=876241
[2025-12-17 15:49:15] 2025-12-17 14:48:17,348 | INFO     | process IDs to be killed: [876241] (in reverse order)
[2025-12-17 15:49:15] 2025-12-17 14:48:17,377 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 15:49:15] 2025-12-17 14:48:17,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 15:49:15] 2025-12-17 14:48:17,380 | INFO     | did not find any defunct processes belonging to 876241
[2025-12-17 15:49:15] 2025-12-17 14:48:17,382 | INFO     | did not find any defunct processes belonging to 876241
[2025-12-17 15:49:15] 2025-12-17 14:48:17,382 | INFO     | ready for new job
[2025-12-17 15:49:15] 2025-12-17 14:48:17,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 15:49:15] 2025-12-17 14:48:17,382 | INFO     | ***************************************
[2025-12-17 15:49:15] 2025-12-17 14:48:17,383 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 15:49:15] 2025-12-17 14:48:17,383 | INFO     | ***************************************
[2025-12-17 15:49:15] 2025-12-17 14:48:17,383 | INFO     | 
[2025-12-17 15:49:15] 2025-12-17 14:48:17,383 | INFO     | architecture information:
[2025-12-17 15:49:15] 2025-12-17 14:48:17,383 | INFO     | executing command: cat /etc/os-release
[2025-12-17 15:49:15] 2025-12-17 14:48:17,390 | INFO     | cat /etc/os-release:
[2025-12-17 15:49:15] NAME="CentOS Linux"
[2025-12-17 15:49:15] VERSION="7 (Core)"
[2025-12-17 15:49:15] ID="centos"
[2025-12-17 15:49:15] ID_LIKE="rhel fedora"
[2025-12-17 15:49:15] VERSION_ID="7"
[2025-12-17 15:49:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 15:49:15] ANSI_COLOR="0;31"
[2025-12-17 15:49:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 15:49:15] HOME_URL="https://www.centos.org/"
[2025-12-17 15:49:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 15:49:15] 
[2025-12-17 15:49:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 15:49:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 15:49:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 15:49:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 15:49:15] 
[2025-12-17 15:49:15] 2025-12-17 14:48:17,390 | INFO     | ***************************************
[2025-12-17 15:49:15] 2025-12-17 14:48:17,893 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | INFO     | sufficient remaining disk space (1265646960640 B)
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | INFO     | update_server=False
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:49:15] 2025-12-17 14:48:17,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 15:49:15] 2025-12-17 14:48:18,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 15:49:15] 2025-12-17 14:48:18,307 | INFO     | all data control threads have been joined
[2025-12-17 15:49:15] 2025-12-17 14:48:18,343 | INFO     | all payload control threads have been joined
[2025-12-17 15:49:15] 2025-12-17 14:48:18,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 15:49:15] 2025-12-17 14:48:18,584 | INFO     | aborting loop
[2025-12-17 15:49:15] 2025-12-17 14:48:18,906 | INFO     | [job] retrieve thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:18,907 | INFO     | [job] queue monitor thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:18,920 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:18,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,019 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,263 | INFO     | [data] copytool_in thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,300 | INFO     | [payload] validate_post thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,313 | INFO     | [data] control thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,347 | INFO     | all job control threads have been joined
[2025-12-17 15:49:15] 2025-12-17 14:48:19,349 | INFO     | [payload] control thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,585 | INFO     | [job] job monitor thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:19,907 | INFO     | [data] copytool_out thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:20,025 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:20,330 | INFO     | [job] validate thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:20,353 | INFO     | [job] control thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:20,396 | INFO     | [payload] failed_post thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:22,069 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 15:49:15] 2025-12-17 14:48:48,743 | INFO     | PID=869497 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 15:49:15] 2025-12-17 14:48:48,743 | INFO     | .. there are 4 such processes running
[2025-12-17 15:49:15] 2025-12-17 14:48:48,744 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 15:49:15] 2025-12-17 14:48:48,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 15:49:15] 2025-12-17 14:48:48,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 15:49:15] 2025-12-17 14:49:08,391 | INFO     | [monitor] cgroup control has ended
[2025-12-17 15:49:15] 2025-12-17 14:49:10,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204454037312)>', '<ExcThread(monitor, started 140203830273792)>']
[2025-12-17 15:49:15] 2025-12-17 14:49:10,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 15:49:15] 2025-12-17 14:49:10,840 | INFO     | [monitor] control thread has ended
[2025-12-17 15:49:15] 2025-12-17 14:49:15,361 | INFO     | all workflow threads have been joined
[2025-12-17 15:49:15] 2025-12-17 14:49:15,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 15:49:15] 2025-12-17 14:49:15,362 | INFO     | traces error code: 0
[2025-12-17 15:49:15] 2025-12-17 14:49:15,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 15:49:15] 2025-12-17 14:49:15,417 [wrapper] ==== pilot stdout END ====
[2025-12-17 15:49:15] 2025-12-17 14:49:15,419 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 15:49:15] 2025-12-17 14:49:15,420 [wrapper] pilotpid: 869497
[2025-12-17 15:49:15] 2025-12-17 14:49:15,421 [wrapper] Pilot exit status: 0
[2025-12-17 15:49:15] 2025-12-17 14:49:15,425 [wrapper] pandaids: 6932316221
[2025-12-17 15:49:15] 2025-12-17 14:49:15,443 [wrapper] cleanup supervisor_pilot  964209 869498
[2025-12-17 15:49:15] 2025-12-17 14:49:15,445 [wrapper] Test setup, not cleaning
[2025-12-17 15:49:15] 2025-12-17 14:49:15,446 [wrapper] apfmon messages muted
[2025-12-17 15:49:15] 2025-12-17 14:49:15,447 [wrapper] ==== wrapper stdout END ====
[2025-12-17 15:49:15] 2025-12-17 14:49:15,448 [wrapper] ==== wrapper stderr END ====
[2025-12-17 15:49:15]  *** Error codes and diagnostics ***
[2025-12-17 15:49:15]     "exeErrorCode": 0,
[2025-12-17 15:49:15]     "exeErrorDiag": "",
[2025-12-17 15:49:15]     "pilotErrorCode": 0,
[2025-12-17 15:49:15]     "pilotErrorDiag": "",
[2025-12-17 15:49:15]  *** Listing of results directory ***
[2025-12-17 15:49:15] total 393580
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc    579449 Dec 17 09:37 pilot3.tar.gz
[2025-12-17 15:49:15] -rwx------ 1 boinc boinc     36322 Dec 17 09:38 runpilot2-wrapper.sh
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc      5112 Dec 17 09:38 queuedata.json
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc       100 Dec 17 15:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 15:49:15] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 15:16 run_atlas
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc       105 Dec 17 15:16 job.xml
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:16 start_atlas.sh
[2025-12-17 15:49:15] drwxrwx--x 2 boinc boinc        68 Dec 17 15:16 shared
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc    592382 Dec 17 15:16 input.tar.gz
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc      9189 Dec 17 15:16 init_data.xml
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc 201448566 Dec 17 15:16 EVNT.47905897._000011.pool.root.1
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:16 boinc_setup_complete
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:16 boinc_lockfile
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc      2483 Dec 17 15:16 pandaJob.out
[2025-12-17 15:49:15] -rw------- 1 boinc boinc    987423 Dec 17 15:17 agis_schedconf.cvmfs.json
[2025-12-17 15:49:15] -rw------- 1 boinc boinc   1516240 Dec 17 15:17 agis_ddmendpoints.agis.ALL.json
[2025-12-17 15:49:15] drwx------ 5 boinc boinc      4096 Dec 17 15:17 pilot3
[2025-12-17 15:49:15] -rw------- 1 boinc boinc 196380911 Dec 17 15:47 HITS.47905899._000253.pool.root.1
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc       529 Dec 17 15:47 boinc_task_state.xml
[2025-12-17 15:49:15] -rw------- 1 boinc boinc      1028 Dec 17 15:48 memory_monitor_summary.json
[2025-12-17 15:49:15] -rw------- 1 boinc boinc    334005 Dec 17 15:48 log.47905899._000253.job.log.tgz.1
[2025-12-17 15:49:15] -rw------- 1 boinc boinc      7776 Dec 17 15:48 heartbeat.json
[2025-12-17 15:49:15] -rw------- 1 boinc boinc        95 Dec 17 15:48 pilot_heartbeat.json
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc      8192 Dec 17 15:49 boinc_mmap_file
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc        27 Dec 17 15:49 wrapper_checkpoint.txt
[2025-12-17 15:49:15] -rw------- 1 boinc boinc      4824 Dec 17 15:49 pilotlog.txt
[2025-12-17 15:49:15] -rw------- 1 boinc boinc    313424 Dec 17 15:49 log.47905899._000253.job.log.1
[2025-12-17 15:49:15] -rw------- 1 boinc boinc       357 Dec 17 15:49 output.list
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc       620 Dec 17 15:49 runtime_log
[2025-12-17 15:49:15] -rw------- 1 boinc boinc    665600 Dec 17 15:49 result.tar.gz
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc      8765 Dec 17 15:49 runtime_log.err
[2025-12-17 15:49:15] -rw------- 1 boinc boinc       639 Dec 17 15:49 2xoNDm1D2p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcCXKDmmGZOQo.diag
[2025-12-17 15:49:15] -rw-r--r-- 1 boinc boinc     22017 Dec 17 15:49 stderr.txt
[2025-12-17 15:49:15] HITS file was successfully produced:
[2025-12-17 15:49:15] -rw------- 1 boinc boinc 196380911 Dec 17 15:47 shared/HITS.pool.root.1
[2025-12-17 15:49:15]  *** Contents of shared directory: ***
[2025-12-17 15:49:15] total 389756
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:16 start_atlas.sh
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc    592382 Dec 17 15:16 input.tar.gz
[2025-12-17 15:49:15] -rw-r--r-- 2 boinc boinc 201448566 Dec 17 15:16 ATLAS.root_0
[2025-12-17 15:49:15] -rw------- 1 boinc boinc 196380911 Dec 17 15:47 HITS.pool.root.1
[2025-12-17 15:49:15] -rw------- 1 boinc boinc    665600 Dec 17 15:49 result.tar.gz
15:49:16 (865443): run_atlas exited; CPU time 19521.513994
15:49:16 (865443): called boinc_finish(0)

</stderr_txt>
]]>

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