Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:04:29 (3227645): wrapper (7.7.26015): starting
21:04:29 (3227645): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 21:04:29] Arguments: --nthreads 4
[2025-12-17 21:04:29] Threads: 4
[2025-12-17 21:04:29] Checking for CVMFS
[2025-12-17 21:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 21:04:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 21:04:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 21:04:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 21:04:30] 2.13.1.0 13397 5934 82440 154121 1 57 8633351 10240000 911 130560 0 7896306 99.938 537165 257 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 21:04:30] CVMFS is ok
[2025-12-17 21:04:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 21:04:30] Checking for apptainer binary...
[2025-12-17 21:04:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 21:04:30] Running /usr/bin/apptainer --version
[2025-12-17 21:04:30] apptainer version 1.4.5
[2025-12-17 21:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 21:04:30] atlas7l1
[2025-12-17 21:04:30] apptainer works
[2025-12-17 21:04:30] Set ATHENA_PROC_NUMBER=4
[2025-12-17 21:04:30] Set ATHENA_CORE_NUMBER=4
[2025-12-17 21:04:30] Starting ATLAS job with PandaID=6931735085
[2025-12-17 21:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 22:41:06]  *** The last 200 lines of the pilot log: ***
[2025-12-17 22:41:06]  lfn=log.47886831._016530.job.log.tgz.1
[2025-12-17 22:41:06]  mtime=0
[2025-12-17 22:41:06]  protocol_id=None
[2025-12-17 22:41:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 22:41:06]  replicas=None
[2025-12-17 22:41:06]  scope=mc23_13p6TeV
[2025-12-17 22:41:06]  status=None
[2025-12-17 22:41:06]  status_code=0
[2025-12-17 22:41:06]  storage_token=
[2025-12-17 22:41:06]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931735085/log.47886831._016530.job.log.tgz.1
[2025-12-17 22:41:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/34/log.47886831._016530.job.log.tgz.1
[2025-12-17 22:41:06]  workdir=None
[2025-12-17 22:41:06] ]
[2025-12-17 22:41:06] 2025-12-17 21:40:30,000 | INFO     | transferring file log.47886831._016530.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931735085/log.47886831._016530.job.log.tgz.1 to /var/li
[2025-12-17 22:41:06] 2025-12-17 21:40:30,000 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931735085/log.47886831._016530.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-17 22:41:06] 2025-12-17 21:40:30,015 | INFO     | adding to output.list: log.47886831._016530.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/34/log.47886831._016530.job.log.tg
[2025-12-17 22:41:06] 2025-12-17 21:40:30,016 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 22:41:06] 2025-12-17 21:40:30,016 | INFO     | summary of transferred files:
[2025-12-17 22:41:06] 2025-12-17 21:40:30,016 | INFO     |  -- lfn=log.47886831._016530.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 22:41:06] 2025-12-17 21:40:30,016 | INFO     | stage-out finished correctly
[2025-12-17 22:41:06] 2025-12-17 21:40:30,062 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 22:41:06] 2025-12-17 21:40:31,040 | INFO     | time since job start (5750s) is within the limit (174528.0s)
[2025-12-17 22:41:06] 2025-12-17 21:40:31,095 | INFO     | job 6931735085 has state=finished
[2025-12-17 22:41:06] 2025-12-17 21:40:31,096 | INFO     | preparing for final server update for job 6931735085 in state='finished'
[2025-12-17 22:41:06] 2025-12-17 21:40:31,097 | INFO     | this job has now completed (state=finished)
[2025-12-17 22:41:06] 2025-12-17 21:40:31,097 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 22:41:06] 2025-12-17 21:40:31,097 | INFO     | log transfer has been attempted: DONE
[2025-12-17 22:41:06] 2025-12-17 21:40:31,097 | INFO     | job 6931735085 has finished - writing final server update
[2025-12-17 22:41:06] 2025-12-17 21:40:31,097 | INFO     | total number of processed events: 400 (read)
[2025-12-17 22:41:06] 2025-12-17 21:40:31,099 | INFO     | executing command: lscpu
[2025-12-17 22:41:06] 2025-12-17 21:40:31,120 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 22:41:06] 2025-12-17 21:40:33,045 | INFO     | time since job start (5752s) is within the limit (174528.0s)
[2025-12-17 22:41:06] 2025-12-17 21:40:33,113 | WARNING  | process 3237984 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 22:41:06] 2025-12-17 21:40:33,113 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931735085/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 22:41:06] 2025-12-17 21:40:33,210 | INFO     | number of running child processes to parent process 3237984: 1
[2025-12-17 22:41:06] 2025-12-17 21:40:33,210 | INFO     | maximum number of monitored processes: 6
[2025-12-17 22:41:06] 2025-12-17 21:40:34,965 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 22:41:06] 2025-12-17 21:40:34,965 | INFO     | found 16 cores (1 core per socket, 16 sockets) , CPU MHz: 2400.0
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931735085/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | INFO     | extracted standard info from prmon json
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 22:41:06] 2025-12-17 21:40:34,967 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 22:41:06] 2025-12-17 21:40:34,968 | INFO     | fitting pss+swap vs Time
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | sum of square deviations: 204163828.0
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | sum of deviations: -3179091432.9999995
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | mean x: 1766004830.0
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | mean y: 2338426.528735632
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | intersect: 27501288072.445545
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | chi2: 0.08835357442407756
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | current memory leak: -15.57 B/s (using 87 data points, chi2=0.09)
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | ..............................
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | . Timing measurements:
[2025-12-17 22:41:06] 2025-12-17 21:40:34,969 | INFO     | . get job = 0 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . initial setup = 5 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . payload setup = 3 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . stage-in = 0 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . payload execution = 5727 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . stage-out = 0 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | . log creation = 0 s
[2025-12-17 22:41:06] 2025-12-17 21:40:34,970 | INFO     | ..............................
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | 
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | job summary report
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | --------------------------------------------------
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | PanDA job id: 6931735085
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | task id: 47886831
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | errors: (none)
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | pilot state: finished 
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | transexitcode: 0
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | exeerrorcode: 0
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | exeerrordiag: 
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | exitcode: 0
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | exitmsg: OK
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | cpuconsumptiontime: 21805 s
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | nevents: 400
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | neventsw: 0
[2025-12-17 22:41:06] 2025-12-17 21:40:35,017 | INFO     | pid: 3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | pgrp: 3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | corecount: 4
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | event service: False
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | sizes: {0: 2283836, 1: 2283864, 3: 2284297, 11: 2284325, 5735: 2320118, 5740: 2320256}
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | --------------------------------------------------
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | 
[2025-12-17 22:41:06] 2025-12-17 21:40:35,018 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,031 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 22:41:06] 2025-12-17 21:40:35,031 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,031 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 22:41:06] 2025-12-17 21:40:35,031 | INFO     | job 6931735085 has completed (purged errors)
[2025-12-17 22:41:06] 2025-12-17 21:40:35,031 | INFO     | overall cleanup function is called
[2025-12-17 22:41:06] 2025-12-17 21:40:36,037 | INFO     | --- collectZombieJob: --- 10, [3237984]
[2025-12-17 22:41:06] 2025-12-17 21:40:36,037 | INFO     | zombie collector waiting for pid 3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:36,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 22:41:06] 2025-12-17 21:40:36,038 | INFO     | collected zombie processes
[2025-12-17 22:41:06] 2025-12-17 21:40:36,038 | INFO     | will attempt to kill all subprocesses of pid=3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:36,123 | INFO     | process IDs to be killed: [3237984] (in reverse order)
[2025-12-17 22:41:06] 2025-12-17 21:40:36,162 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 22:41:06] 2025-12-17 21:40:36,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 22:41:06] 2025-12-17 21:40:36,164 | INFO     | did not find any defunct processes belonging to 3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:36,166 | INFO     | did not find any defunct processes belonging to 3237984
[2025-12-17 22:41:06] 2025-12-17 21:40:36,167 | INFO     | ready for new job
[2025-12-17 22:41:06] 2025-12-17 21:40:36,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | ***************************************
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | ***************************************
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | 
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | pilot is running in a VM
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | architecture information:
[2025-12-17 22:41:06] 2025-12-17 21:40:36,168 | INFO     | executing command: cat /etc/os-release
[2025-12-17 22:41:06] 2025-12-17 21:40:36,179 | INFO     | cat /etc/os-release:
[2025-12-17 22:41:06] NAME="CentOS Linux"
[2025-12-17 22:41:06] VERSION="7 (Core)"
[2025-12-17 22:41:06] ID="centos"
[2025-12-17 22:41:06] ID_LIKE="rhel fedora"
[2025-12-17 22:41:06] VERSION_ID="7"
[2025-12-17 22:41:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 22:41:06] ANSI_COLOR="0;31"
[2025-12-17 22:41:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 22:41:06] HOME_URL="https://www.centos.org/"
[2025-12-17 22:41:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 22:41:06] 
[2025-12-17 22:41:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 22:41:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 22:41:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 22:41:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 22:41:06] 
[2025-12-17 22:41:06] 2025-12-17 21:40:36,179 | INFO     | ***************************************
[2025-12-17 22:41:06] 2025-12-17 21:40:36,682 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-17 22:41:06] 2025-12-17 21:40:36,698 | INFO     | sufficient remaining disk space (151669178368 B)
[2025-12-17 22:41:06] 2025-12-17 21:40:36,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 22:41:06] 2025-12-17 21:40:36,698 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 22:41:06] 2025-12-17 21:40:36,698 | INFO     | update_server=False
[2025-12-17 22:41:06] 2025-12-17 21:40:36,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 22:41:06] 2025-12-17 21:40:36,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:41:06] 2025-12-17 21:40:36,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 22:41:06] 2025-12-17 21:40:36,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:41:06] 2025-12-17 21:40:36,718 | INFO     | aborting loop
[2025-12-17 22:41:06] 2025-12-17 21:40:37,227 | INFO     | all payload control threads have been joined
[2025-12-17 22:41:06] 2025-12-17 21:40:37,633 | INFO     | all data control threads have been joined
[2025-12-17 22:41:06] 2025-12-17 21:40:37,703 | INFO     | [job] queue monitor thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:37,704 | INFO     | [job] retrieve thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:37,723 | INFO     | [job] job monitor thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,043 | INFO     | [payload] failed_post thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,053 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 22:41:06] 2025-12-17 21:40:38,232 | INFO     | [payload] control thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,368 | INFO     | all job control threads have been joined
[2025-12-17 22:41:06] 2025-12-17 21:40:38,569 | INFO     | [job] validate thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,602 | INFO     | [payload] validate_post thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,622 | INFO     | [data] copytool_in thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,636 | INFO     | [data] control thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,636 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:38,777 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:39,373 | INFO     | [job] control thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:40,079 | INFO     | [data] copytool_out thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:40,704 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:47,213 | INFO     | job.realtimelogging is not enabled
[2025-12-17 22:41:06] 2025-12-17 21:40:48,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 22:41:06] 2025-12-17 21:40:48,562 | INFO     | [monitor] cgroup control has ended
[2025-12-17 22:41:06] 2025-12-17 21:40:49,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128518833649472)>', '<ExcThread(monitor, started 128518323148544)>']
[2025-12-17 22:41:06] 2025-12-17 21:40:54,192 | INFO     | all workflow threads have been joined
[2025-12-17 22:41:06] 2025-12-17 21:40:54,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 22:41:06] 2025-12-17 21:40:54,192 | INFO     | traces error code: 0
[2025-12-17 22:41:06] 2025-12-17 21:40:54,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | INFO     | PID=3231445 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | INFO     | .. there are 2 such processes running
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 22:41:06] 2025-12-17 21:41:06,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 22:41:06] 2025-12-17 21:41:06,244 | INFO     | [monitor] control thread has ended
[2025-12-17 22:41:06] 2025-12-17 21:41:06,317 [wrapper] ==== pilot stdout END ====
[2025-12-17 22:41:06] 2025-12-17 21:41:06,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 22:41:06] 2025-12-17 21:41:06,326 [wrapper] pilotpid: 3231445
[2025-12-17 22:41:06] 2025-12-17 21:41:06,328 [wrapper] Pilot exit status: 0
[2025-12-17 22:41:06] 2025-12-17 21:41:06,343 [wrapper] pandaids: 6931735085
[2025-12-17 22:41:06] 2025-12-17 21:41:06,372 [wrapper] cleanup supervisor_pilot 3279704 3231446
[2025-12-17 22:41:06] 2025-12-17 21:41:06,377 [wrapper] Test setup, not cleaning
[2025-12-17 22:41:06] 2025-12-17 21:41:06,380 [wrapper] apfmon messages muted
[2025-12-17 22:41:06] 2025-12-17 21:41:06,384 [wrapper] ==== wrapper stdout END ====
[2025-12-17 22:41:06] 2025-12-17 21:41:06,388 [wrapper] ==== wrapper stderr END ====
[2025-12-17 22:41:06]  *** Error codes and diagnostics ***
[2025-12-17 22:41:06]     "exeErrorCode": 0,
[2025-12-17 22:41:06]     "exeErrorDiag": "",
[2025-12-17 22:41:06]     "pilotErrorCode": 0,
[2025-12-17 22:41:06]     "pilotErrorDiag": "",
[2025-12-17 22:41:06]  *** Listing of results directory ***
[2025-12-17 22:41:06] insgesamt 334340
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc    579449 Dez 17 02:05 pilot3.tar.gz
[2025-12-17 22:41:06] -rwx------ 1 yeti boinc     36322 Dez 17 02:06 runpilot2-wrapper.sh
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc      5112 Dez 17 02:06 queuedata.json
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc       100 Dez 17 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 22:41:06] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 21:04 run_atlas
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc       105 Dez 17 21:04 job.xml
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc 192119785 Dez 17 21:04 EVNT.47886829._000660.pool.root.1
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc     15847 Dez 17 21:04 start_atlas.sh
[2025-12-17 22:41:06] drwxrwx--x 2 yeti boinc      4096 Dez 17 21:04 shared
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc    592414 Dez 17 21:04 input.tar.gz
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc      6616 Dez 17 21:04 init_data.xml
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc         0 Dez 17 21:04 boinc_setup_complete
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc         0 Dez 17 21:04 boinc_lockfile
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc      2539 Dez 17 21:04 pandaJob.out
[2025-12-17 22:41:06] -rw------- 1 yeti boinc        52 Dez 17 21:04 setup.sh.local
[2025-12-17 22:41:06] -rw------- 1 yeti boinc    988136 Dez 17 21:04 agis_schedconf.cvmfs.json
[2025-12-17 22:41:06] -rw------- 1 yeti boinc   1516240 Dez 17 21:04 agis_ddmendpoints.agis.ALL.json
[2025-12-17 22:41:06] drwx------ 5 yeti boinc      4096 Dez 17 21:04 pilot3
[2025-12-17 22:41:06] -rw------- 1 yeti boinc 144048697 Dez 17 22:40 HITS.47886831._016530.pool.root.1
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc       529 Dez 17 22:40 boinc_task_state.xml
[2025-12-17 22:41:06] -rw------- 1 yeti boinc        95 Dez 17 22:40 pilot_heartbeat.json
[2025-12-17 22:41:06] -rw------- 1 yeti boinc      1023 Dez 17 22:40 memory_monitor_summary.json
[2025-12-17 22:41:06] -rw------- 1 yeti boinc    274759 Dez 17 22:40 log.47886831._016530.job.log.tgz.1
[2025-12-17 22:41:06] -rw------- 1 yeti boinc      7768 Dez 17 22:40 heartbeat.json
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc      8192 Dez 17 22:40 boinc_mmap_file
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc        27 Dez 17 22:40 wrapper_checkpoint.txt
[2025-12-17 22:41:06] -rw------- 1 yeti boinc       822 Dez 17 22:41 pilotlog.txt
[2025-12-17 22:41:06] -rw------- 1 yeti boinc    861934 Dez 17 22:41 log.47886831._016530.job.log.1
[2025-12-17 22:41:06] -rw------- 1 yeti boinc       357 Dez 17 22:41 output.list
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc       620 Dez 17 22:41 runtime_log
[2025-12-17 22:41:06] -rw------- 1 yeti boinc   1157120 Dez 17 22:41 result.tar.gz
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc      9545 Dez 17 22:41 runtime_log.err
[2025-12-17 22:41:06] -rw------- 1 yeti boinc       639 Dez 17 22:41 JxhLDm3Avp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmWWKDm2wst2n.diag
[2025-12-17 22:41:06] -rw-r--r-- 1 yeti boinc     21365 Dez 17 22:41 stderr.txt
[2025-12-17 22:41:06] HITS file was successfully produced:
[2025-12-17 22:41:06] -rw------- 1 yeti boinc 144048697 Dez 17 22:40 shared/HITS.pool.root.1
[2025-12-17 22:41:06]  *** Contents of shared directory: ***
[2025-12-17 22:41:06] insgesamt 330032
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc 192119785 Dez 17 21:04 ATLAS.root_0
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc     15847 Dez 17 21:04 start_atlas.sh
[2025-12-17 22:41:06] -rw-r--r-- 2 yeti boinc    592414 Dez 17 21:04 input.tar.gz
[2025-12-17 22:41:06] -rw------- 1 yeti boinc 144048697 Dez 17 22:40 HITS.pool.root.1
[2025-12-17 22:41:06] -rw------- 1 yeti boinc   1157120 Dez 17 22:41 result.tar.gz
22:41:08 (3227645): run_atlas exited; CPU time 21876.268847
22:41:08 (3227645): called boinc_finish(0)

</stderr_txt>
]]>

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