Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
19:27:26 (786806): wrapper (7.7.26015): starting
19:27:26 (786806): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 19:27:26] Arguments: --nthreads 4
[2025-12-17 19:27:26] Threads: 4
[2025-12-17 19:27:26] Checking for CVMFS
[2025-12-17 19:27:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 19:27:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 19:27:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 19:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 19:27:27] 2.12.7.0 131565 5368 56612 154119 1 187 9817108 10240001 1377 130560 0 13361609 99.962 520422 445 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 19:27:27] CVMFS is ok
[2025-12-17 19:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 19:27:27] Checking for apptainer binary...
[2025-12-17 19:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 19:27:27] Running /usr/bin/apptainer --version
[2025-12-17 19:27:27] apptainer version 1.3.4
[2025-12-17 19:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 19:27:27] diegovlneu
[2025-12-17 19:27:27] apptainer works
[2025-12-17 19:27:27] Set ATHENA_PROC_NUMBER=4
[2025-12-17 19:27:27] Set ATHENA_CORE_NUMBER=4
[2025-12-17 19:27:27] Starting ATLAS job with PandaID=6931730938
[2025-12-17 19:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 20:35:01]  *** The last 200 lines of the pilot log: ***
[2025-12-17 20:35:01] 2025-12-17 19:34:18,023 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931730938/log.47886831._015087.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-17 20:35:01] 2025-12-17 19:34:18,051 | INFO     | adding to output.list: log.47886831._015087.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/b1/log.47886831._015087.job.log.tg
[2025-12-17 20:35:01] 2025-12-17 19:34:18,052 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 20:35:01] 2025-12-17 19:34:18,052 | INFO     | summary of transferred files:
[2025-12-17 20:35:01] 2025-12-17 19:34:18,052 | INFO     |  -- lfn=log.47886831._015087.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 20:35:01] 2025-12-17 19:34:18,052 | INFO     | stage-out finished correctly
[2025-12-17 20:35:01] 2025-12-17 19:34:18,212 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 20:35:01] 2025-12-17 19:34:18,240 | INFO     | job 6931730938 has state=finished
[2025-12-17 20:35:01] 2025-12-17 19:34:18,240 | INFO     | preparing for final server update for job 6931730938 in state='finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:18,241 | INFO     | this job has now completed (state=finished)
[2025-12-17 20:35:01] 2025-12-17 19:34:18,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 20:35:01] 2025-12-17 19:34:18,241 | INFO     | log transfer has been attempted: DONE
[2025-12-17 20:35:01] 2025-12-17 19:34:18,241 | INFO     | job 6931730938 has finished - writing final server update
[2025-12-17 20:35:01] 2025-12-17 19:34:18,241 | INFO     | total number of processed events: 400 (read)
[2025-12-17 20:35:01] 2025-12-17 19:34:18,242 | INFO     | executing command: lscpu
[2025-12-17 20:35:01] 2025-12-17 19:34:18,282 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 20:35:01] 2025-12-17 19:34:18,336 | INFO     | monitor loop #303: job 0:6931730938 is in state 'finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:18,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:35:01] 2025-12-17 19:34:19,768 | INFO     | time since job start (3999s) is within the limit (174528.0s)
[2025-12-17 20:35:01] 2025-12-17 19:34:20,840 | INFO     | monitor loop #304: job 0:6931730938 is in state 'finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:20,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:35:01] 2025-12-17 19:34:21,775 | INFO     | time since job start (4001s) is within the limit (174528.0s)
[2025-12-17 20:35:01] 2025-12-17 19:34:23,344 | INFO     | monitor loop #305: job 0:6931730938 is in state 'finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:23,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:35:01] 2025-12-17 19:34:23,781 | INFO     | time since job start (4003s) is within the limit (174528.0s)
[2025-12-17 20:35:01] 2025-12-17 19:34:25,787 | INFO     | time since job start (4005s) is within the limit (174528.0s)
[2025-12-17 20:35:01] 2025-12-17 19:34:25,850 | INFO     | monitor loop #306: job 0:6931730938 is in state 'finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:25,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:35:01] 2025-12-17 19:34:26,986 | INFO     | PID=790624 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 20:35:01] 2025-12-17 19:34:26,986 | INFO     | .. there are 3 such processes running
[2025-12-17 20:35:01] 2025-12-17 19:34:27,988 | INFO     | time since job start (4007s) is within the limit (174528.0s)
[2025-12-17 20:35:01] 2025-12-17 19:34:27,988 | INFO     | 4009s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-17 20:35:01] 2025-12-17 19:34:28,354 | INFO     | monitor loop #307: job 0:6931730938 is in state 'finished'
[2025-12-17 20:35:01] 2025-12-17 19:34:28,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,743 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 20:35:01] 2025-12-17 19:34:28,744 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 4699.926999999997
[2025-12-17 20:35:01] 2025-12-17 19:34:28,745 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931730938/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,746 | INFO     | extracted standard info from prmon json
[2025-12-17 20:35:01] 2025-12-17 19:34:28,746 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 20:35:01] 2025-12-17 19:34:28,746 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 20:35:01] 2025-12-17 19:34:28,746 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 20:35:01] 2025-12-17 19:34:28,746 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 20:35:01] 2025-12-17 19:34:28,747 | INFO     | fitting pss+swap vs Time
[2025-12-17 20:35:01] 2025-12-17 19:34:28,747 | INFO     | sum of square deviations: 60482994.5
[2025-12-17 20:35:01] 2025-12-17 19:34:28,747 | INFO     | sum of deviations: -4740545643.0
[2025-12-17 20:35:01] 2025-12-17 19:34:28,747 | INFO     | mean x: 1765998133.5
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | mean y: 2401517.793103448
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | intersect: 138418080611.02246
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | chi2: 0.014083396915390034
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | current memory leak: -78.38 B/s (using 58 data points, chi2=0.01)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | could have reported an average CPU frequency of 4699 MHz (6 samples)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | ..............................
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . Timing measurements:
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . get job = 0 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . initial setup = 1 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . payload setup = 7 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . stage-in = 0 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . payload execution = 3969 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . stage-out = 0 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | . log creation = 0 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,748 | INFO     | ..............................
[2025-12-17 20:35:01] 2025-12-17 19:34:28,780 | INFO     | 
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | job summary report
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | --------------------------------------------------
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | PanDA job id: 6931730938
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | task id: 47886831
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | errors: (none)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | pilot state: finished 
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | transexitcode: 0
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | exeerrorcode: 0
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | exeerrordiag: 
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | exitcode: 0
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | exitmsg: OK
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | cpuconsumptiontime: 14902 s
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | nevents: 400
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | neventsw: 0
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | pid: 797228
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | pgrp: 797228
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | corecount: 4
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | event service: False
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | sizes: {0: 2283951, 5: 2284213, 10: 2284269, 3980: 2310102, 3981: 2319184, 3992: 2319322}
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | --------------------------------------------------
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | 
[2025-12-17 20:35:01] 2025-12-17 19:34:28,781 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3
[2025-12-17 20:35:01] 2025-12-17 19:34:28,806 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,806 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 20:35:01] 2025-12-17 19:34:28,807 | INFO     | job 6931730938 has completed (purged errors)
[2025-12-17 20:35:01] 2025-12-17 19:34:28,808 | INFO     | overall cleanup function is called
[2025-12-17 20:35:01] 2025-12-17 19:34:29,821 | INFO     | --- collectZombieJob: --- 10, [797228]
[2025-12-17 20:35:01] 2025-12-17 19:34:29,821 | INFO     | zombie collector waiting for pid 797228
[2025-12-17 20:35:01] 2025-12-17 19:34:29,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 20:35:01] 2025-12-17 19:34:29,821 | INFO     | collected zombie processes
[2025-12-17 20:35:01] 2025-12-17 19:34:29,821 | INFO     | will attempt to kill all subprocesses of pid=797228
[2025-12-17 20:35:01] 2025-12-17 19:34:29,965 | INFO     | process IDs to be killed: [797228] (in reverse order)
[2025-12-17 20:35:01] 2025-12-17 19:34:30,036 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 20:35:01] 2025-12-17 19:34:30,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 20:35:01] 2025-12-17 19:34:30,040 | INFO     | did not find any defunct processes belonging to 797228
[2025-12-17 20:35:01] 2025-12-17 19:34:30,044 | INFO     | did not find any defunct processes belonging to 797228
[2025-12-17 20:35:01] 2025-12-17 19:34:30,045 | INFO     | ready for new job
[2025-12-17 20:35:01] 2025-12-17 19:34:30,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 20:35:01] 2025-12-17 19:34:30,048 | INFO     | ***************************************
[2025-12-17 20:35:01] 2025-12-17 19:34:30,049 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 20:35:01] 2025-12-17 19:34:30,049 | INFO     | ***************************************
[2025-12-17 20:35:01] 2025-12-17 19:34:30,049 | INFO     | 
[2025-12-17 20:35:01] 2025-12-17 19:34:30,049 | INFO     | pilot is running in a VM
[2025-12-17 20:35:01] 2025-12-17 19:34:30,049 | INFO     | architecture information:
[2025-12-17 20:35:01] 2025-12-17 19:34:30,050 | INFO     | executing command: cat /etc/os-release
[2025-12-17 20:35:01] 2025-12-17 19:34:30,068 | INFO     | cat /etc/os-release:
[2025-12-17 20:35:01] NAME="CentOS Linux"
[2025-12-17 20:35:01] VERSION="7 (Core)"
[2025-12-17 20:35:01] ID="centos"
[2025-12-17 20:35:01] ID_LIKE="rhel fedora"
[2025-12-17 20:35:01] VERSION_ID="7"
[2025-12-17 20:35:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 20:35:01] ANSI_COLOR="0;31"
[2025-12-17 20:35:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 20:35:01] HOME_URL="https://www.centos.org/"
[2025-12-17 20:35:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 20:35:01] 
[2025-12-17 20:35:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 20:35:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 20:35:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 20:35:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 20:35:01] 
[2025-12-17 20:35:01] 2025-12-17 19:34:30,068 | INFO     | ***************************************
[2025-12-17 20:35:01] 2025-12-17 19:34:30,572 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/3
[2025-12-17 20:35:01] 2025-12-17 19:34:30,589 | INFO     | sufficient remaining disk space (84983939072 B)
[2025-12-17 20:35:01] 2025-12-17 19:34:30,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 20:35:01] 2025-12-17 19:34:30,589 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 20:35:01] 2025-12-17 19:34:30,590 | INFO     | update_server=False
[2025-12-17 20:35:01] 2025-12-17 19:34:30,590 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 20:35:01] 2025-12-17 19:34:30,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 20:35:01] 2025-12-17 19:34:30,858 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 20:35:01] 2025-12-17 19:34:30,858 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 20:35:01] 2025-12-17 19:34:30,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 20:35:01] 2025-12-17 19:34:30,858 | INFO     | will abort loop
[2025-12-17 20:35:01] 2025-12-17 19:34:31,065 | INFO     | all data control threads have been joined
[2025-12-17 20:35:01] 2025-12-17 19:34:31,081 | INFO     | all job control threads have been joined
[2025-12-17 20:35:01] 2025-12-17 19:34:31,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 20:35:01] 2025-12-17 19:34:31,591 | INFO     | [job] retrieve thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:31,596 | INFO     | [job] queue monitor thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:31,620 | INFO     | [payload] failed_post thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:31,862 | INFO     | [job] job monitor thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,071 | INFO     | [data] control thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,073 | INFO     | all payload control threads have been joined
[2025-12-17 20:35:01] 2025-12-17 19:34:32,087 | INFO     | [job] control thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,151 | INFO     | [data] copytool_in thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,279 | INFO     | [payload] validate_post thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,477 | INFO     | [job] validate thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,532 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,645 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:32,845 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:33,078 | INFO     | [payload] control thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:33,113 | INFO     | [data] copytool_out thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:33,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 20:35:01] 2025-12-17 19:34:37,270 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:41,481 | INFO     | job.realtimelogging is not enabled
[2025-12-17 20:35:01] 2025-12-17 19:34:42,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 20:35:01] 2025-12-17 19:34:45,327 | INFO     | [monitor] cgroup control has ended
[2025-12-17 20:35:01] 2025-12-17 19:34:45,342 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130244457736000)>', '<ExcThread(monitor, started 130243004200704)>']
[2025-12-17 20:35:01] 2025-12-17 19:34:50,349 | INFO     | all workflow threads have been joined
[2025-12-17 20:35:01] 2025-12-17 19:34:50,350 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 20:35:01] 2025-12-17 19:34:50,350 | INFO     | traces error code: 0
[2025-12-17 20:35:01] 2025-12-17 19:34:50,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | INFO     | PID=790624 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | INFO     | .. there are 3 such processes running
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 20:35:01] 2025-12-17 19:35:01,228 | INFO     | [monitor] control thread has ended
[2025-12-17 20:35:01] 2025-12-17 19:35:01,345 [wrapper] ==== pilot stdout END ====
[2025-12-17 20:35:01] 2025-12-17 19:35:01,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 20:35:01] 2025-12-17 19:35:01,356 [wrapper] pilotpid: 790624
[2025-12-17 20:35:01] 2025-12-17 19:35:01,361 [wrapper] Pilot exit status: 0
[2025-12-17 20:35:01] 2025-12-17 19:35:01,388 [wrapper] pandaids: 6931730938
[2025-12-17 20:35:01] 2025-12-17 19:35:01,444 [wrapper] cleanup supervisor_pilot  832712 790625
[2025-12-17 20:35:01] 2025-12-17 19:35:01,450 [wrapper] Test setup, not cleaning
[2025-12-17 20:35:01] 2025-12-17 19:35:01,455 [wrapper] apfmon messages muted
[2025-12-17 20:35:01] 2025-12-17 19:35:01,459 [wrapper] ==== wrapper stdout END ====
[2025-12-17 20:35:01] 2025-12-17 19:35:01,469 [wrapper] ==== wrapper stderr END ====
[2025-12-17 20:35:01]  *** Error codes and diagnostics ***
[2025-12-17 20:35:01]     "exeErrorCode": 0,
[2025-12-17 20:35:01]     "exeErrorDiag": "",
[2025-12-17 20:35:01]     "pilotErrorCode": 0,
[2025-12-17 20:35:01]     "pilotErrorDiag": "",
[2025-12-17 20:35:01]  *** Listing of results directory ***
[2025-12-17 20:35:01] insgesamt 342612
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc      5112 Dez 16 21:04 queuedata.json
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc    579449 Dez 16 21:04 pilot3.tar.gz
[2025-12-17 20:35:01] -rwx------ 1 yeti boinc     36322 Dez 16 21:04 runpilot2-wrapper.sh
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc       100 Dez 17 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 20:35:01] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 19:27 run_atlas
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc       105 Dez 17 19:27 job.xml
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc 195006668 Dez 17 19:27 EVNT.47886829._000292.pool.root.1
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc     15847 Dez 17 19:27 start_atlas.sh
[2025-12-17 20:35:01] drwxrwx--x 2 yeti boinc      4096 Dez 17 19:27 shared
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc    592416 Dez 17 19:27 input.tar.gz
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc      6697 Dez 17 19:27 init_data.xml
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc         0 Dez 17 19:27 boinc_setup_complete
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc         0 Dez 17 19:27 boinc_lockfile
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc      2536 Dez 17 19:27 pandaJob.out
[2025-12-17 20:35:01] -rw------- 1 yeti boinc        52 Dez 17 19:27 setup.sh.local
[2025-12-17 20:35:01] -rw------- 1 yeti boinc    988136 Dez 17 19:27 agis_schedconf.cvmfs.json
[2025-12-17 20:35:01] -rw------- 1 yeti boinc   1516240 Dez 17 19:27 agis_ddmendpoints.agis.ALL.json
[2025-12-17 20:35:01] drwx------ 5 yeti boinc      4096 Dez 17 19:27 pilot3
[2025-12-17 20:35:01] -rw------- 1 yeti boinc 150204609 Dez 17 20:33 HITS.47886831._015087.pool.root.1
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc       529 Dez 17 20:34 boinc_task_state.xml
[2025-12-17 20:35:01] -rw------- 1 yeti boinc      1020 Dez 17 20:34 memory_monitor_summary.json
[2025-12-17 20:35:01] -rw------- 1 yeti boinc    243820 Dez 17 20:34 log.47886831._015087.job.log.tgz.1
[2025-12-17 20:35:01] -rw------- 1 yeti boinc        95 Dez 17 20:34 pilot_heartbeat.json
[2025-12-17 20:35:01] -rw------- 1 yeti boinc      7736 Dez 17 20:34 heartbeat.json
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc        27 Dez 17 20:34 wrapper_checkpoint.txt
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc      8192 Dez 17 20:34 boinc_mmap_file
[2025-12-17 20:35:01] -rw------- 1 yeti boinc       821 Dez 17 20:35 pilotlog.txt
[2025-12-17 20:35:01] -rw------- 1 yeti boinc    611105 Dez 17 20:35 log.47886831._015087.job.log.1
[2025-12-17 20:35:01] -rw------- 1 yeti boinc       357 Dez 17 20:35 output.list
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc       620 Dez 17 20:35 runtime_log
[2025-12-17 20:35:01] -rw------- 1 yeti boinc    870400 Dez 17 20:35 result.tar.gz
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc      9552 Dez 17 20:35 runtime_log.err
[2025-12-17 20:35:01] -rw------- 1 yeti boinc       639 Dez 17 20:35 JuKKDmySqp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmraaKDmYLOLSo.diag
[2025-12-17 20:35:01] -rw-r--r-- 1 yeti boinc     22149 Dez 17 20:35 stderr.txt
[2025-12-17 20:35:01] HITS file was successfully produced:
[2025-12-17 20:35:01] -rw------- 1 yeti boinc 150204609 Dez 17 20:33 shared/HITS.pool.root.1
[2025-12-17 20:35:01]  *** Contents of shared directory: ***
[2025-12-17 20:35:01] insgesamt 338580
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc 195006668 Dez 17 19:27 ATLAS.root_0
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc     15847 Dez 17 19:27 start_atlas.sh
[2025-12-17 20:35:01] -rw-r--r-- 2 yeti boinc    592416 Dez 17 19:27 input.tar.gz
[2025-12-17 20:35:01] -rw------- 1 yeti boinc 150204609 Dez 17 20:33 HITS.pool.root.1
[2025-12-17 20:35:01] -rw------- 1 yeti boinc    870400 Dez 17 20:35 result.tar.gz
20:35:03 (786806): run_atlas exited; CPU time 15004.723238
20:35:03 (786806): called boinc_finish(0)

</stderr_txt>
]]>

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