Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:31:06 (367381): wrapper (7.7.26015): starting
15:31:06 (367381): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 15:31:06] Arguments: --nthreads 12
[2025-12-17 15:31:06] Threads: 12
[2025-12-17 15:31:06] Checking for CVMFS
[2025-12-17 15:31:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 15:31:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 15:31:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 15:31:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 15:31:06] 2.11.0.0 1971323 3558 101852 154112 0 188 3766277 6144001 11990 130560 0 45359742 99.999 129871 178 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-17 15:31:06] CVMFS is ok
[2025-12-17 15:31:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 15:31:06] Checking for apptainer binary...
[2025-12-17 15:31:06] apptainer is not installed, using version from CVMFS
[2025-12-17 15:31:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 15:31:07] radiat0r
[2025-12-17 15:31:07] apptainer works
[2025-12-17 15:31:07] Set ATHENA_PROC_NUMBER=12
[2025-12-17 15:31:07] Set ATHENA_CORE_NUMBER=12
[2025-12-17 15:31:07] Starting ATLAS job with PandaID=6932080341
[2025-12-17 15:31:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 16:45:35]  *** The last 200 lines of the pilot log: ***
[2025-12-17 16:45:35]  status=None
[2025-12-17 16:45:35]  status_code=0
[2025-12-17 16:45:35]  storage_token=
[2025-12-17 16:45:35]  surl=/var/lib/boinc/slots/21/PanDA_Pilot-6932080341/log.47905890._000553.job.log.tgz.1
[2025-12-17 16:45:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/f9/log.47905890._000553.job.log.tgz.1
[2025-12-17 16:45:35]  workdir=None
[2025-12-17 16:45:35] ]
[2025-12-17 16:45:35] 2025-12-17 16:44:49,338 | INFO     | transferring file log.47905890._000553.job.log.tgz.1 from /var/lib/boinc/slots/21/PanDA_Pilot-6932080341/log.47905890._000553.job.log.tgz.1 to /var/lib/boinc/slots
[2025-12-17 16:45:35] 2025-12-17 16:44:49,338 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/21/PanDA_Pilot-6932080341/log.47905890._000553.job.log.tgz.1 /var/lib/boinc/slots/21/log.47905890._000553.j
[2025-12-17 16:45:35] 2025-12-17 16:44:49,358 | INFO     | adding to output.list: log.47905890._000553.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/f9/log.47905890._000553.job.log.tg
[2025-12-17 16:45:35] 2025-12-17 16:44:49,359 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 16:45:35] 2025-12-17 16:44:49,359 | INFO     | summary of transferred files:
[2025-12-17 16:45:35] 2025-12-17 16:44:49,359 | INFO     |  -- lfn=log.47905890._000553.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 16:45:35] 2025-12-17 16:44:49,359 | INFO     | stage-out finished correctly
[2025-12-17 16:45:35] 2025-12-17 16:44:49,429 | INFO     | monitor loop #306: job 0:6932080341 is in state 'finished'
[2025-12-17 16:45:35] 2025-12-17 16:44:49,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:45:35] 2025-12-17 16:44:49,442 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 16:45:35] 2025-12-17 16:44:49,769 | INFO     | time since job start (4407s) is within the limit (174528.0s)
[2025-12-17 16:45:35] 2025-12-17 16:44:51,186 | INFO     | job 6932080341 has state=finished
[2025-12-17 16:45:35] 2025-12-17 16:44:51,186 | INFO     | preparing for final server update for job 6932080341 in state='finished'
[2025-12-17 16:45:35] 2025-12-17 16:44:51,187 | INFO     | this job has now completed (state=finished)
[2025-12-17 16:45:35] 2025-12-17 16:44:51,187 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 16:45:35] 2025-12-17 16:44:51,187 | INFO     | log transfer has been attempted: DONE
[2025-12-17 16:45:35] 2025-12-17 16:44:51,187 | INFO     | job 6932080341 has finished - writing final server update
[2025-12-17 16:45:35] 2025-12-17 16:44:51,188 | INFO     | total number of processed events: 400 (read)
[2025-12-17 16:45:35] 2025-12-17 16:44:51,190 | INFO     | executing command: lscpu
[2025-12-17 16:45:35] 2025-12-17 16:44:51,383 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 16:45:35] 2025-12-17 16:44:51,775 | INFO     | time since job start (4409s) is within the limit (174528.0s)
[2025-12-17 16:45:35] 2025-12-17 16:44:51,945 | INFO     | monitor loop #307: job 0:6932080341 is in state 'finished'
[2025-12-17 16:45:35] 2025-12-17 16:44:51,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:45:35] 2025-12-17 16:44:53,780 | INFO     | time since job start (4411s) is within the limit (174528.0s)
[2025-12-17 16:45:35] 2025-12-17 16:44:54,448 | INFO     | monitor loop #308: job 0:6932080341 is in state 'finished'
[2025-12-17 16:45:35] 2025-12-17 16:44:54,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:45:35] 2025-12-17 16:44:55,786 | INFO     | time since job start (4413s) is within the limit (174528.0s)
[2025-12-17 16:45:35] 2025-12-17 16:44:56,952 | INFO     | monitor loop #309: job 0:6932080341 is in state 'finished'
[2025-12-17 16:45:35] 2025-12-17 16:44:56,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,142 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 16:45:35] 2025-12-17 16:44:57,197 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2426.3564296875
[2025-12-17 16:45:35] 2025-12-17 16:44:57,234 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6932080341/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,235 | INFO     | extracted standard info from prmon json
[2025-12-17 16:45:35] 2025-12-17 16:44:57,235 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 16:45:35] 2025-12-17 16:44:57,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 16:45:35] 2025-12-17 16:44:57,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 16:45:35] 2025-12-17 16:44:57,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 16:45:35] 2025-12-17 16:44:57,236 | INFO     | fitting pss+swap vs Time
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | sum of square deviations: 85136480.0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | sum of deviations: 1687925082.9999995
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | mean x: 1765987774.0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | mean y: 2691055.3538461537
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | intersect: -35009974020.83834
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | chi2: 0.010530903592704697
[2025-12-17 16:45:35] 2025-12-17 16:44:57,237 | INFO     | current memory leak: 19.83 B/s (using 65 data points, chi2=0.01)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | could have reported an average CPU frequency of 2437 MHz (6 samples)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | ..............................
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . Timing measurements:
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . get job = 0 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . initial setup = 3 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . payload setup = 8 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . stage-in = 0 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . payload execution = 4375 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . stage-out = 0 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | . log creation = 0 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,238 | INFO     | ..............................
[2025-12-17 16:45:35] 2025-12-17 16:44:57,444 | INFO     | 
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | job summary report
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | --------------------------------------------------
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | PanDA job id: 6932080341
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | task id: 47905890
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | errors: (none)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | pilot state: finished 
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | transexitcode: 0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | exeerrorcode: 0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | exeerrordiag: 
[2025-12-17 16:45:35] 2025-12-17 16:44:57,445 | INFO     | exitcode: 0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | exitmsg: OK
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | cpuconsumptiontime: 47565 s
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | nevents: 400
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | neventsw: 0
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | pid: 380213
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | pgrp: 380213
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | corecount: 12
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | event service: False
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | sizes: {0: 2283698, 1: 2283897, 8: 2284159, 12: 2284187, 4386: 2310360, 4387: 2310359, 4388: 2319599, 4396: 2319737}
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | --------------------------------------------------
[2025-12-17 16:45:35] 2025-12-17 16:44:57,446 | INFO     | 
[2025-12-17 16:45:35] 2025-12-17 16:44:57,447 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-12-17 16:45:35] 2025-12-17 16:44:57,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 16:45:35] 2025-12-17 16:44:57,477 | INFO     | job 6932080341 has completed (purged errors)
[2025-12-17 16:45:35] 2025-12-17 16:44:57,477 | INFO     | overall cleanup function is called
[2025-12-17 16:45:35] 2025-12-17 16:44:58,486 | INFO     | --- collectZombieJob: --- 10, [380213]
[2025-12-17 16:45:35] 2025-12-17 16:44:58,486 | INFO     | zombie collector waiting for pid 380213
[2025-12-17 16:45:35] 2025-12-17 16:44:58,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 16:45:35] 2025-12-17 16:44:58,487 | INFO     | collected zombie processes
[2025-12-17 16:45:35] 2025-12-17 16:44:58,487 | INFO     | will attempt to kill all subprocesses of pid=380213
[2025-12-17 16:45:35] 2025-12-17 16:44:59,256 | INFO     | process IDs to be killed: [380213] (in reverse order)
[2025-12-17 16:45:35] 2025-12-17 16:44:59,495 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 16:45:35] 2025-12-17 16:44:59,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 16:45:35] 2025-12-17 16:44:59,522 | INFO     | did not find any defunct processes belonging to 380213
[2025-12-17 16:45:35] 2025-12-17 16:44:59,547 | INFO     | did not find any defunct processes belonging to 380213
[2025-12-17 16:45:35] 2025-12-17 16:44:59,547 | INFO     | ready for new job
[2025-12-17 16:45:35] 2025-12-17 16:44:59,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 16:45:35] 2025-12-17 16:44:59,549 | INFO     | ***************************************
[2025-12-17 16:45:35] 2025-12-17 16:44:59,549 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 16:45:35] 2025-12-17 16:44:59,549 | INFO     | ***************************************
[2025-12-17 16:45:35] 2025-12-17 16:44:59,549 | INFO     | 
[2025-12-17 16:45:35] 2025-12-17 16:44:59,584 | INFO     | architecture information:
[2025-12-17 16:45:35] 2025-12-17 16:44:59,585 | INFO     | executing command: cat /etc/os-release
[2025-12-17 16:45:35] 2025-12-17 16:44:59,612 | INFO     | cat /etc/os-release:
[2025-12-17 16:45:35] NAME="CentOS Linux"
[2025-12-17 16:45:35] VERSION="7 (Core)"
[2025-12-17 16:45:35] ID="centos"
[2025-12-17 16:45:35] ID_LIKE="rhel fedora"
[2025-12-17 16:45:35] VERSION_ID="7"
[2025-12-17 16:45:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 16:45:35] ANSI_COLOR="0;31"
[2025-12-17 16:45:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 16:45:35] HOME_URL="https://www.centos.org/"
[2025-12-17 16:45:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 16:45:35] 
[2025-12-17 16:45:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 16:45:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 16:45:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 16:45:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 16:45:35] 
[2025-12-17 16:45:35] 2025-12-17 16:44:59,613 | INFO     | ***************************************
[2025-12-17 16:45:35] 2025-12-17 16:45:00,115 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-12-17 16:45:35] 2025-12-17 16:45:00,144 | INFO     | sufficient remaining disk space (1707233771520 B)
[2025-12-17 16:45:35] 2025-12-17 16:45:00,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 16:45:35] 2025-12-17 16:45:00,144 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 16:45:35] 2025-12-17 16:45:00,145 | INFO     | update_server=False
[2025-12-17 16:45:35] 2025-12-17 16:45:00,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 16:45:35] 2025-12-17 16:45:00,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 16:45:35] 2025-12-17 16:45:00,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 16:45:35] 2025-12-17 16:45:00,288 | INFO     | all data control threads have been joined
[2025-12-17 16:45:35] 2025-12-17 16:45:00,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:45:35] 2025-12-17 16:45:00,460 | INFO     | aborting loop
[2025-12-17 16:45:35] 2025-12-17 16:45:00,607 | INFO     | all job control threads have been joined
[2025-12-17 16:45:35] 2025-12-17 16:45:00,777 | INFO     | all payload control threads have been joined
[2025-12-17 16:45:35] 2025-12-17 16:45:01,150 | INFO     | [job] retrieve thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,291 | INFO     | [data] control thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,415 | INFO     | [payload] failed_post thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,415 | INFO     | [data] copytool_in thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,465 | INFO     | [job] job monitor thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,595 | INFO     | [job] validate thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,613 | INFO     | [job] control thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,783 | INFO     | [payload] control thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:01,899 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:02,021 | INFO     | [payload] validate_post thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:02,132 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:02,151 | INFO     | [data] copytool_out thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:02,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:45:35] 2025-12-17 16:45:02,641 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:03,321 | INFO     | [job] queue monitor thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:04,151 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:10,579 | INFO     | job.realtimelogging is not enabled
[2025-12-17 16:45:35] 2025-12-17 16:45:11,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 16:45:35] 2025-12-17 16:45:27,855 | INFO     | 4418s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-17 16:45:35] 2025-12-17 16:45:29,015 | INFO     | [monitor] cgroup control has ended
[2025-12-17 16:45:35] 2025-12-17 16:45:29,804 | INFO     | PID=372079 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 16:45:35] 2025-12-17 16:45:29,804 | INFO     | .. there are 14 such processes running
[2025-12-17 16:45:35] 2025-12-17 16:45:29,804 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 16:45:35] 2025-12-17 16:45:29,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 16:45:35] 2025-12-17 16:45:29,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 16:45:35] 2025-12-17 16:45:30,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379018901312)>', '<ExcThread(monitor, started 140378447537920)>']
[2025-12-17 16:45:35] 2025-12-17 16:45:30,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 16:45:35] 2025-12-17 16:45:30,810 | INFO     | [monitor] control thread has ended
[2025-12-17 16:45:35] 2025-12-17 16:45:35,235 | INFO     | all workflow threads have been joined
[2025-12-17 16:45:35] 2025-12-17 16:45:35,236 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 16:45:35] 2025-12-17 16:45:35,236 | INFO     | traces error code: 0
[2025-12-17 16:45:35] 2025-12-17 16:45:35,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 16:45:35] 2025-12-17 16:45:35,458 [wrapper] ==== pilot stdout END ====
[2025-12-17 16:45:35] 2025-12-17 16:45:35,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 16:45:35] 2025-12-17 16:45:35,465 [wrapper] pilotpid: 372079
[2025-12-17 16:45:35] 2025-12-17 16:45:35,467 [wrapper] Pilot exit status: 0
[2025-12-17 16:45:35] 2025-12-17 16:45:35,478 [wrapper] pandaids: 6932080341
[2025-12-17 16:45:35] 2025-12-17 16:45:35,629 [wrapper] cleanup supervisor_pilot  686013 372080
[2025-12-17 16:45:35] 2025-12-17 16:45:35,632 [wrapper] Test setup, not cleaning
[2025-12-17 16:45:35] 2025-12-17 16:45:35,635 [wrapper] apfmon messages muted
[2025-12-17 16:45:35] 2025-12-17 16:45:35,637 [wrapper] ==== wrapper stdout END ====
[2025-12-17 16:45:35] 2025-12-17 16:45:35,639 [wrapper] ==== wrapper stderr END ====
[2025-12-17 16:45:35]  *** Error codes and diagnostics ***
[2025-12-17 16:45:35]     "exeErrorCode": 0,
[2025-12-17 16:45:35]     "exeErrorDiag": "",
[2025-12-17 16:45:35]     "pilotErrorCode": 0,
[2025-12-17 16:45:35]     "pilotErrorDiag": "",
[2025-12-17 16:45:35]  *** Listing of results directory ***
[2025-12-17 16:45:35] total 411876
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc      5112 Dec 17 03:48 queuedata.json
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc    579449 Dec 17 03:48 pilot3.tar.gz
[2025-12-17 16:45:35] -rwx------ 1 boinc boinc     36322 Dec 17 03:48 runpilot2-wrapper.sh
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc       100 Dec 17 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 16:45:35] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 15:31 run_atlas
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc       105 Dec 17 15:31 job.xml
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:31 start_atlas.sh
[2025-12-17 16:45:35] drwxrwx--x 2 boinc boinc      4096 Dec 17 15:31 shared
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc    592384 Dec 17 15:31 input.tar.gz
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc      9417 Dec 17 15:31 init_data.xml
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc 201257269 Dec 17 15:31 EVNT.47905888._000021.pool.root.1
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:31 boinc_setup_complete
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:31 boinc_lockfile
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc      2444 Dec 17 15:31 pandaJob.out
[2025-12-17 16:45:35] -rw------- 1 boinc boinc    987423 Dec 17 15:31 agis_schedconf.cvmfs.json
[2025-12-17 16:45:35] -rw------- 1 boinc boinc   1516240 Dec 17 15:31 agis_ddmendpoints.agis.ALL.json
[2025-12-17 16:45:35] drwx------ 5 boinc boinc      4096 Dec 17 15:31 pilot3
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc       529 Dec 17 16:44 boinc_task_state.xml
[2025-12-17 16:45:35] -rw------- 1 boinc boinc 214569556 Dec 17 16:44 HITS.47905890._000553.pool.root.1
[2025-12-17 16:45:35] -rw------- 1 boinc boinc        95 Dec 17 16:44 pilot_heartbeat.json
[2025-12-17 16:45:35] -rw------- 1 boinc boinc      1022 Dec 17 16:44 memory_monitor_summary.json
[2025-12-17 16:45:35] -rw------- 1 boinc boinc    371488 Dec 17 16:44 log.47905890._000553.job.log.tgz.1
[2025-12-17 16:45:35] -rw------- 1 boinc boinc      7726 Dec 17 16:44 heartbeat.json
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc      8192 Dec 17 16:45 boinc_mmap_file
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc        27 Dec 17 16:45 wrapper_checkpoint.txt
[2025-12-17 16:45:35] -rw------- 1 boinc boinc      5013 Dec 17 16:45 pilotlog.txt
[2025-12-17 16:45:35] -rw------- 1 boinc boinc    635853 Dec 17 16:45 log.47905890._000553.job.log.1
[2025-12-17 16:45:35] -rw------- 1 boinc boinc       357 Dec 17 16:45 output.list
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc       620 Dec 17 16:45 runtime_log
[2025-12-17 16:45:35] -rw------- 1 boinc boinc   1024000 Dec 17 16:45 result.tar.gz
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc      8788 Dec 17 16:45 runtime_log.err
[2025-12-17 16:45:35] -rw------- 1 boinc boinc       642 Dec 17 16:45 m9LMDm4hxp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvFbKDm9oH1Vm.diag
[2025-12-17 16:45:35] -rw-r--r-- 1 boinc boinc     21792 Dec 17 16:45 stderr.txt
[2025-12-17 16:45:35] HITS file was successfully produced:
[2025-12-17 16:45:35] -rw------- 1 boinc boinc 214569556 Dec 17 16:44 shared/HITS.pool.root.1
[2025-12-17 16:45:35]  *** Contents of shared directory: ***
[2025-12-17 16:45:35] total 407692
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:31 start_atlas.sh
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc    592384 Dec 17 15:31 input.tar.gz
[2025-12-17 16:45:35] -rw-r--r-- 2 boinc boinc 201257269 Dec 17 15:31 ATLAS.root_0
[2025-12-17 16:45:35] -rw------- 1 boinc boinc 214569556 Dec 17 16:44 HITS.pool.root.1
[2025-12-17 16:45:35] -rw------- 1 boinc boinc   1024000 Dec 17 16:45 result.tar.gz
16:45:37 (367381): run_atlas exited; CPU time 47811.393492
16:45:37 (367381): called boinc_finish(0)

</stderr_txt>
]]>

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