Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:32:17 (2541198): wrapper (7.7.26015): starting
22:32:17 (2541198): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 22:32:17] Arguments: --nthreads 4
[2025-12-17 22:32:17] Threads: 4
[2025-12-17 22:32:17] Checking for CVMFS
[2025-12-17 22:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 22:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 22:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 22:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 22:32:18] 2.9.2.0 639704 6577 99224 154123 0 57 19739997 36864001 0 130560 0 4794692 99.990 235755 17365 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 22:32:18] CVMFS is ok
[2025-12-17 22:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 22:32:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 22:32:18] Further information can be found at the LHC@home message board.
[2025-12-17 22:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 22:32:18] Checking for apptainer binary...
[2025-12-17 22:32:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 22:32:18] Running /usr/bin/apptainer --version
[2025-12-17 22:32:18] apptainer version 1.4.1-1.1
[2025-12-17 22:32:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 22:32:18] thA309
[2025-12-17 22:32:18] apptainer works
[2025-12-17 22:32:18] Set ATHENA_PROC_NUMBER=4
[2025-12-17 22:32:18] Set ATHENA_CORE_NUMBER=4
[2025-12-17 22:32:18] Starting ATLAS job with PandaID=6929266145
[2025-12-17 22:32:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 00:14:41]  *** The last 200 lines of the pilot log: ***
[2025-12-18 00:14:41] 2025-12-17 23:13:52,642 | INFO     | maximum number of monitored processes: 6
[2025-12-18 00:14:41] 2025-12-17 23:13:52,643 | INFO     | aborting job monitoring since job object (job id=6929266145) has expired
[2025-12-18 00:14:41] 2025-12-17 23:13:53,612 | INFO     | --- collectZombieJob: --- 10, [2551576]
[2025-12-18 00:14:41] 2025-12-17 23:13:53,612 | INFO     | zombie collector waiting for pid 2551576
[2025-12-18 00:14:41] 2025-12-17 23:13:53,612 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 00:14:41] 2025-12-17 23:13:53,612 | INFO     | collected zombie processes
[2025-12-18 00:14:41] 2025-12-17 23:13:53,612 | INFO     | will attempt to kill all subprocesses of pid=2551576
[2025-12-18 00:14:41] 2025-12-17 23:13:53,662 | INFO     | process IDs to be killed: [2551576] (in reverse order)
[2025-12-18 00:14:41] 2025-12-17 23:13:53,699 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 00:14:41] 2025-12-17 23:13:53,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 00:14:41] 2025-12-17 23:13:53,701 | INFO     | did not find any defunct processes belonging to 2551576
[2025-12-18 00:14:41] 2025-12-17 23:13:53,703 | INFO     | did not find any defunct processes belonging to 2551576
[2025-12-18 00:14:41] 2025-12-17 23:13:53,703 | INFO     | ready for new job
[2025-12-18 00:14:41] 2025-12-17 23:13:53,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 00:14:41] 2025-12-17 23:13:53,704 | INFO     | ***************************************
[2025-12-18 00:14:41] 2025-12-17 23:13:53,704 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 00:14:41] 2025-12-17 23:13:53,704 | INFO     | ***************************************
[2025-12-18 00:14:41] 2025-12-17 23:13:53,704 | INFO     | 
[2025-12-18 00:14:41] 2025-12-17 23:13:53,704 | INFO     | architecture information:
[2025-12-18 00:14:41] 2025-12-17 23:13:53,705 | INFO     | executing command: cat /etc/os-release
[2025-12-18 00:14:41] 2025-12-17 23:13:53,720 | INFO     | cat /etc/os-release:
[2025-12-18 00:14:41] NAME="CentOS Linux"
[2025-12-18 00:14:41] VERSION="7 (Core)"
[2025-12-18 00:14:41] ID="centos"
[2025-12-18 00:14:41] ID_LIKE="rhel fedora"
[2025-12-18 00:14:41] VERSION_ID="7"
[2025-12-18 00:14:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 00:14:41] ANSI_COLOR="0;31"
[2025-12-18 00:14:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 00:14:41] HOME_URL="https://www.centos.org/"
[2025-12-18 00:14:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 00:14:41] 
[2025-12-18 00:14:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 00:14:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 00:14:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 00:14:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 00:14:41] 
[2025-12-18 00:14:41] 2025-12-17 23:13:53,720 | INFO     | ***************************************
[2025-12-18 00:14:41] 2025-12-17 23:13:54,223 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 00:14:41] 2025-12-17 23:13:54,242 | INFO     | sufficient remaining disk space (240332570624 B)
[2025-12-18 00:14:41] 2025-12-17 23:13:54,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 00:14:41] 2025-12-17 23:13:54,242 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | INFO     | update_server=False
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 00:14:41] 2025-12-17 23:13:54,243 | INFO     | aborting loop
[2025-12-18 00:14:41] 2025-12-17 23:13:54,559 | INFO     | all job control threads have been joined
[2025-12-18 00:14:41] 2025-12-17 23:13:55,154 | INFO     | all data control threads have been joined
[2025-12-18 00:14:41] 2025-12-17 23:13:55,248 | INFO     | [job] retrieve thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:55,249 | INFO     | [job] queue monitor thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:55,249 | INFO     | [job] job monitor thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:55,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 00:14:41] 2025-12-17 23:13:55,565 | INFO     | [job] control thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:55,591 | INFO     | all payload control threads have been joined
[2025-12-18 00:14:41] 2025-12-17 23:13:55,812 | INFO     | [data] copytool_in thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:55,914 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,107 | INFO     | [payload] failed_post thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,160 | INFO     | [data] control thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,491 | INFO     | [job] validate thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,597 | INFO     | [payload] control thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,598 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,654 | INFO     | [payload] validate_post thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:56,670 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:57,369 | INFO     | [data] copytool_out thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:13:58,250 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:14:04,917 | INFO     | job.realtimelogging is not enabled
[2025-12-18 00:14:41] 2025-12-17 23:14:05,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 00:14:41] 2025-12-17 23:14:23,735 | INFO     | PID=2544998 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 00:14:41] 2025-12-17 23:14:23,736 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 00:14:41] 2025-12-17 23:14:23,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 00:14:41] 2025-12-17 23:14:23,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 00:14:41] 2025-12-17 23:14:34,426 | INFO     | [monitor] cgroup control has ended
[2025-12-18 00:14:41] 2025-12-17 23:14:36,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834968610624)>', '<ExcThread(monitor, started 139833599063808)>']
[2025-12-18 00:14:41] 2025-12-17 23:14:36,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 00:14:41] 2025-12-17 23:14:36,805 | INFO     | [monitor] control thread has ended
[2025-12-18 00:14:41] 2025-12-17 23:14:41,056 | INFO     | all workflow threads have been joined
[2025-12-18 00:14:41] 2025-12-17 23:14:41,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 00:14:41] 2025-12-17 23:14:41,057 | INFO     | traces error code: 0
[2025-12-18 00:14:41] 2025-12-17 23:14:41,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 00:14:41] 2025-12-17 23:14:41,140 [wrapper] ==== pilot stdout END ====
[2025-12-18 00:14:41] 2025-12-17 23:14:41,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 00:14:41] 2025-12-17 23:14:41,148 [wrapper] pilotpid: 2544998
[2025-12-18 00:14:41] 2025-12-17 23:14:41,152 [wrapper] Pilot exit status: 0
[2025-12-18 00:14:41] 2025-12-17 23:14:41,164 [wrapper] pandaids: 6929266145
[2025-12-18 00:14:41] 2025-12-17 23:14:41,190 [wrapper] cleanup supervisor_pilot 2564666 2544999
[2025-12-18 00:14:41] 2025-12-17 23:14:41,194 [wrapper] Test setup, not cleaning
[2025-12-18 00:14:41] 2025-12-17 23:14:41,198 [wrapper] apfmon messages muted
[2025-12-18 00:14:41] 2025-12-17 23:14:41,202 [wrapper] ==== wrapper stdout END ====
[2025-12-18 00:14:41] 2025-12-17 23:14:41,206 [wrapper] ==== wrapper stderr END ====
[2025-12-18 00:14:41]  *** Error codes and diagnostics ***
[2025-12-18 00:14:41]     "exeErrorCode": 0,
[2025-12-18 00:14:41]     "exeErrorDiag": "",
[2025-12-18 00:14:41]     "pilotErrorCode": 0,
[2025-12-18 00:14:41]     "pilotErrorDiag": "",
[2025-12-18 00:14:41]  *** Listing of results directory ***
[2025-12-18 00:14:41] total 444488
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-18 00:14:41] -rwx------ 1 boinc boinc     36322 Dec 13 11:03 runpilot2-wrapper.sh
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc      5112 Dec 13 11:03 queuedata.json
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc       100 Dec 17 22:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 00:14:41] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 22:32 run_atlas
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc       105 Dec 17 22:32 job.xml
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc 222826147 Dec 17 22:32 EVNT.47898761._000122.pool.root.1
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc    592389 Dec 17 22:32 input.tar.gz
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc     15847 Dec 17 22:32 start_atlas.sh
[2025-12-18 00:14:41] drwxrwx--x 2 boinc boinc      4096 Dec 17 22:32 shared
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc         0 Dec 17 22:32 boinc_setup_complete
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc      6377 Dec 17 22:32 init_data.xml
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc         0 Dec 17 22:32 boinc_lockfile
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc      2503 Dec 17 22:32 pandaJob.out
[2025-12-18 00:14:41] -rw------- 1 boinc boinc    988142 Dec 17 22:32 agis_schedconf.cvmfs.json
[2025-12-18 00:14:41] -rw------- 1 boinc boinc   1516240 Dec 17 22:32 agis_ddmendpoints.agis.ALL.json
[2025-12-18 00:14:41] drwx------ 5 boinc boinc      4096 Dec 17 22:32 pilot3
[2025-12-18 00:14:41] -rw------- 1 boinc boinc 226107575 Dec 18 00:13 HITS.47898763._002404.pool.root.1
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc       529 Dec 18 00:13 boinc_task_state.xml
[2025-12-18 00:14:41] -rw------- 1 boinc boinc      1017 Dec 18 00:13 memory_monitor_summary.json
[2025-12-18 00:14:41] -rw------- 1 boinc boinc    274944 Dec 18 00:13 log.47898763._002404.job.log.tgz.1
[2025-12-18 00:14:41] -rw------- 1 boinc boinc      7757 Dec 18 00:13 heartbeat.json
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc      8192 Dec 18 00:14 boinc_mmap_file
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc        27 Dec 18 00:14 wrapper_checkpoint.txt
[2025-12-18 00:14:41] -rw------- 1 boinc boinc        95 Dec 18 00:14 pilot_heartbeat.json
[2025-12-18 00:14:41] -rw------- 1 boinc boinc      4824 Dec 18 00:14 pilotlog.txt
[2025-12-18 00:14:41] -rw------- 1 boinc boinc    884585 Dec 18 00:14 log.47898763._002404.job.log.1
[2025-12-18 00:14:41] -rw------- 1 boinc boinc       357 Dec 18 00:14 output.list
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc       620 Dec 18 00:14 runtime_log
[2025-12-18 00:14:41] -rw------- 1 boinc boinc   1177600 Dec 18 00:14 result.tar.gz
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc      8897 Dec 18 00:14 runtime_log.err
[2025-12-18 00:14:41] -rw------- 1 boinc boinc       659 Dec 18 00:14 33sKDmzdbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQpSKDmWzLCCo.diag
[2025-12-18 00:14:41] -rw-r--r-- 1 boinc boinc     10940 Dec 18 00:14 stderr.txt
[2025-12-18 00:14:41] HITS file was successfully produced:
[2025-12-18 00:14:41] -rw------- 1 boinc boinc 226107575 Dec 18 00:13 shared/HITS.pool.root.1
[2025-12-18 00:14:41]  *** Contents of shared directory: ***
[2025-12-18 00:14:41] total 440172
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc 222826147 Dec 17 22:32 ATLAS.root_0
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc    592389 Dec 17 22:32 input.tar.gz
[2025-12-18 00:14:41] -rw-r--r-- 2 boinc boinc     15847 Dec 17 22:32 start_atlas.sh
[2025-12-18 00:14:41] -rw------- 1 boinc boinc 226107575 Dec 18 00:13 HITS.pool.root.1
[2025-12-18 00:14:41] -rw------- 1 boinc boinc   1177600 Dec 18 00:14 result.tar.gz
00:14:42 (2541198): run_atlas exited; CPU time 23225.941717
00:14:42 (2541198): called boinc_finish(0)

</stderr_txt>
]]>

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