Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:08:49 (2060728): wrapper (7.7.26015): starting
22:08:49 (2060728): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 22:08:49] Arguments: --nthreads 3
[2025-12-17 22:08:49] Threads: 3
[2025-12-17 22:08:49] Checking for CVMFS
[2025-12-17 22:08:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 22:08:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 22:08:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 22:08:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 22:08:49] 2.9.2.0 415797 6171 81476 154122 2 57 20668364 36864000 0 130560 0 4273235 99.990 219524 16620 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 22:08:49] CVMFS is ok
[2025-12-17 22:08:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 22:08:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 22:08:49] Further information can be found at the LHC@home message board.
[2025-12-17 22:08:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 22:08:49] Checking for apptainer binary...
[2025-12-17 22:08:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 22:08:49] Running /usr/bin/apptainer --version
[2025-12-17 22:08:49] apptainer version 1.4.1-1.1
[2025-12-17 22:08:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 22:08:49] magicA246a
[2025-12-17 22:08:49] apptainer works
[2025-12-17 22:08:49] Set ATHENA_PROC_NUMBER=3
[2025-12-17 22:08:49] Set ATHENA_CORE_NUMBER=3
[2025-12-17 22:08:49] Starting ATLAS job with PandaID=6931736433
[2025-12-17 22:08:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 00:02:09]  *** The last 200 lines of the pilot log: ***
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | job 6931736433 has completed (purged errors)
[2025-12-18 00:02:09] 2025-12-17 23:01:02,669 | INFO     | overall cleanup function is called
[2025-12-18 00:02:09] 2025-12-17 23:01:03,676 | INFO     | --- collectZombieJob: --- 10, [2070903]
[2025-12-18 00:02:09] 2025-12-17 23:01:03,676 | INFO     | zombie collector waiting for pid 2070903
[2025-12-18 00:02:09] 2025-12-17 23:01:03,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 00:02:09] 2025-12-17 23:01:03,676 | INFO     | collected zombie processes
[2025-12-18 00:02:09] 2025-12-17 23:01:03,676 | INFO     | will attempt to kill all subprocesses of pid=2070903
[2025-12-18 00:02:09] 2025-12-17 23:01:03,722 | INFO     | process IDs to be killed: [2070903] (in reverse order)
[2025-12-18 00:02:09] 2025-12-17 23:01:03,748 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 00:02:09] 2025-12-17 23:01:03,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 00:02:09] 2025-12-17 23:01:03,750 | INFO     | did not find any defunct processes belonging to 2070903
[2025-12-18 00:02:09] 2025-12-17 23:01:03,751 | INFO     | did not find any defunct processes belonging to 2070903
[2025-12-18 00:02:09] 2025-12-17 23:01:03,751 | INFO     | ready for new job
[2025-12-18 00:02:09] 2025-12-17 23:01:03,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | ***************************************
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | ***************************************
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | 
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | architecture information:
[2025-12-18 00:02:09] 2025-12-17 23:01:03,752 | INFO     | executing command: cat /etc/os-release
[2025-12-18 00:02:09] 2025-12-17 23:01:03,761 | INFO     | cat /etc/os-release:
[2025-12-18 00:02:09] NAME="CentOS Linux"
[2025-12-18 00:02:09] VERSION="7 (Core)"
[2025-12-18 00:02:09] ID="centos"
[2025-12-18 00:02:09] ID_LIKE="rhel fedora"
[2025-12-18 00:02:09] VERSION_ID="7"
[2025-12-18 00:02:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 00:02:09] ANSI_COLOR="0;31"
[2025-12-18 00:02:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 00:02:09] HOME_URL="https://www.centos.org/"
[2025-12-18 00:02:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 00:02:09] 
[2025-12-18 00:02:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 00:02:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 00:02:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 00:02:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 00:02:09] 
[2025-12-18 00:02:09] 2025-12-17 23:01:03,761 | INFO     | ***************************************
[2025-12-18 00:02:09] 2025-12-17 23:01:04,264 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 00:02:09] 2025-12-17 23:01:04,276 | INFO     | sufficient remaining disk space (283962769408 B)
[2025-12-18 00:02:09] 2025-12-17 23:01:04,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 00:02:09] 2025-12-17 23:01:04,277 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 00:02:09] 2025-12-17 23:01:04,277 | INFO     | update_server=False
[2025-12-18 00:02:09] 2025-12-17 23:01:04,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 00:02:09] 2025-12-17 23:01:04,277 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 00:02:09] 2025-12-17 23:01:04,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 00:02:09] 2025-12-17 23:01:04,580 | INFO     | all job control threads have been joined
[2025-12-18 00:02:09] 2025-12-17 23:01:04,601 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-18 00:02:09] 2025-12-17 23:01:04,602 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-18 00:02:09] 2025-12-17 23:01:04,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 00:02:09] 2025-12-17 23:01:04,602 | INFO     | will abort loop
[2025-12-18 00:02:09] 2025-12-17 23:01:04,966 | INFO     | all data control threads have been joined
[2025-12-18 00:02:09] 2025-12-17 23:01:05,114 | INFO     | all payload control threads have been joined
[2025-12-18 00:02:09] 2025-12-17 23:01:05,282 | INFO     | [job] queue monitor thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:05,283 | INFO     | [job] retrieve thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:05,586 | INFO     | [job] control thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:05,607 | INFO     | [job] job monitor thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:05,732 | INFO     | [payload] failed_post thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:05,971 | INFO     | [data] control thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,109 | INFO     | [data] copytool_in thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,119 | INFO     | [payload] control thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,263 | INFO     | [payload] validate_post thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 00:02:09] 2025-12-17 23:01:06,474 | INFO     | [data] copytool_out thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,564 | INFO     | [job] validate thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,695 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,708 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:06,748 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:10,301 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:14,610 | INFO     | job.realtimelogging is not enabled
[2025-12-18 00:02:09] 2025-12-17 23:01:15,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 00:02:09] 2025-12-17 23:01:35,320 | INFO     | PID=2064451 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 00:02:09] 2025-12-17 23:01:35,320 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 00:02:09] 2025-12-17 23:01:35,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 00:02:09] 2025-12-17 23:01:35,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 00:02:09] 2025-12-17 23:02:02,095 | INFO     | [monitor] cgroup control has ended
[2025-12-18 00:02:09] 2025-12-17 23:02:04,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664998008640)>', '<ExcThread(monitor, started 139664635696896)>']
[2025-12-18 00:02:09] 2025-12-17 23:02:04,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 00:02:09] 2025-12-17 23:02:04,468 | INFO     | [monitor] control thread has ended
[2025-12-18 00:02:09] 2025-12-17 23:02:09,168 | INFO     | all workflow threads have been joined
[2025-12-18 00:02:09] 2025-12-17 23:02:09,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 00:02:09] 2025-12-17 23:02:09,168 | INFO     | traces error code: 0
[2025-12-18 00:02:09] 2025-12-17 23:02:09,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 00:02:09] 2025-12-17 23:02:09,220 [wrapper] ==== pilot stdout END ====
[2025-12-18 00:02:09] 2025-12-17 23:02:09,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 00:02:09] 2025-12-17 23:02:09,225 [wrapper] pilotpid: 2064451
[2025-12-18 00:02:09] 2025-12-17 23:02:09,227 [wrapper] Pilot exit status: 0
[2025-12-18 00:02:09] 2025-12-17 23:02:09,234 [wrapper] pandaids: 6931736433
[2025-12-18 00:02:09] 2025-12-17 23:02:09,252 [wrapper] cleanup supervisor_pilot 2085903 2064452
[2025-12-18 00:02:09] 2025-12-17 23:02:09,254 [wrapper] Test setup, not cleaning
[2025-12-18 00:02:09] 2025-12-17 23:02:09,257 [wrapper] apfmon messages muted
[2025-12-18 00:02:09] 2025-12-17 23:02:09,259 [wrapper] ==== wrapper stdout END ====
[2025-12-18 00:02:09] 2025-12-17 23:02:09,261 [wrapper] ==== wrapper stderr END ====
[2025-12-18 00:02:09]  *** Error codes and diagnostics ***
[2025-12-18 00:02:09]     "exeErrorCode": 0,
[2025-12-18 00:02:09]     "exeErrorDiag": "",
[2025-12-18 00:02:09]     "pilotErrorCode": 0,
[2025-12-18 00:02:09]     "pilotErrorDiag": "",
[2025-12-18 00:02:09]  *** Listing of results directory ***
[2025-12-18 00:02:09] total 436416
[2025-12-18 00:02:09] -rwx------ 1 boinc boinc     36322 Dec 17 02:09 runpilot2-wrapper.sh
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc    579449 Dec 17 02:11 pilot3.tar.gz
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc      5112 Dec 17 02:12 queuedata.json
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc       100 Dec 17 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 00:02:09] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 22:08 run_atlas
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc       105 Dec 17 22:08 job.xml
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc 222512923 Dec 17 22:08 EVNT.47898761._000806.pool.root.1
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc    592401 Dec 17 22:08 input.tar.gz
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc     15847 Dec 17 22:08 start_atlas.sh
[2025-12-18 00:02:09] drwxrwx--x 2 boinc boinc      4096 Dec 17 22:08 shared
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc         0 Dec 17 22:08 boinc_setup_complete
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc      6447 Dec 17 22:08 init_data.xml
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc         0 Dec 17 22:08 boinc_lockfile
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc      2508 Dec 17 22:08 pandaJob.out
[2025-12-18 00:02:09] -rw------- 1 boinc boinc    988150 Dec 17 22:08 agis_schedconf.cvmfs.json
[2025-12-18 00:02:09] -rw------- 1 boinc boinc   1516240 Dec 17 22:08 agis_ddmendpoints.agis.ALL.json
[2025-12-18 00:02:09] drwx------ 5 boinc boinc      4096 Dec 17 22:08 pilot3
[2025-12-18 00:02:09] -rw------- 1 boinc boinc 217977155 Dec 18 00:00 HITS.47898763._020772.pool.root.1
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc       529 Dec 18 00:00 boinc_task_state.xml
[2025-12-18 00:02:09] -rw------- 1 boinc boinc      1016 Dec 18 00:00 memory_monitor_summary.json
[2025-12-18 00:02:09] -rw------- 1 boinc boinc    277094 Dec 18 00:00 log.47898763._020772.job.log.tgz.1
[2025-12-18 00:02:09] -rw------- 1 boinc boinc      7748 Dec 18 00:01 heartbeat.json
[2025-12-18 00:02:09] -rw------- 1 boinc boinc        95 Dec 18 00:01 pilot_heartbeat.json
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc        27 Dec 18 00:02 wrapper_checkpoint.txt
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc      8192 Dec 18 00:02 boinc_mmap_file
[2025-12-18 00:02:09] -rw------- 1 boinc boinc      5010 Dec 18 00:02 pilotlog.txt
[2025-12-18 00:02:09] -rw------- 1 boinc boinc    973914 Dec 18 00:02 log.47898763._020772.job.log.1
[2025-12-18 00:02:09] -rw------- 1 boinc boinc       357 Dec 18 00:02 output.list
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc       620 Dec 18 00:02 runtime_log
[2025-12-18 00:02:09] -rw------- 1 boinc boinc   1269760 Dec 18 00:02 result.tar.gz
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc      8917 Dec 18 00:02 runtime_log.err
[2025-12-18 00:02:09] -rw------- 1 boinc boinc       663 Dec 18 00:02 gEnMDm0Dvp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrhWKDmyv3wdn.diag
[2025-12-18 00:02:09] -rw-r--r-- 1 boinc boinc     11948 Dec 18 00:02 stderr.txt
[2025-12-18 00:02:09] HITS file was successfully produced:
[2025-12-18 00:02:09] -rw------- 1 boinc boinc 217977155 Dec 18 00:00 shared/HITS.pool.root.1
[2025-12-18 00:02:09]  *** Contents of shared directory: ***
[2025-12-18 00:02:09] total 432012
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc 222512923 Dec 17 22:08 ATLAS.root_0
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc    592401 Dec 17 22:08 input.tar.gz
[2025-12-18 00:02:09] -rw-r--r-- 2 boinc boinc     15847 Dec 17 22:08 start_atlas.sh
[2025-12-18 00:02:09] -rw------- 1 boinc boinc 217977155 Dec 18 00:00 HITS.pool.root.1
[2025-12-18 00:02:09] -rw------- 1 boinc boinc   1269760 Dec 18 00:02 result.tar.gz
00:02:10 (2060728): run_atlas exited; CPU time 19437.155355
00:02:10 (2060728): called boinc_finish(0)

</stderr_txt>
]]>

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