Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:00:50 (3657): wrapper (7.7.26015): starting
07:00:50 (3657): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 07:00:50] Arguments: --nthreads 12
[2025-12-17 07:00:50] Threads: 12
[2025-12-17 07:00:50] Checking for CVMFS
[2025-12-17 07:00:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 07:00:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 07:00:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 07:00:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 07:00:51] 2.11.2.0 25590 218575 92084 154111 0 59 15561059 20275200 1 130560 2 112311390 99.963 9163501 27872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 07:00:51] CVMFS is ok
[2025-12-17 07:00:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 07:00:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 07:00:51] Further information can be found at the LHC@home message board.
[2025-12-17 07:00:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 07:00:51] Checking for apptainer binary...
[2025-12-17 07:00:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 07:00:51] Running /usr/bin/apptainer --version
[2025-12-17 07:00:51] apptainer version 1.3.2-1.el7
[2025-12-17 07:00:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 07:00:52] c-205-24.aglt2.org
[2025-12-17 07:00:52] apptainer works
[2025-12-17 07:00:52] Set ATHENA_PROC_NUMBER=12
[2025-12-17 07:00:52] Set ATHENA_CORE_NUMBER=12
[2025-12-17 07:00:52] Starting ATLAS job with PandaID=6931736449
[2025-12-17 07:00:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 08:40:22]  *** The last 200 lines of the pilot log: ***
[2025-12-17 08:40:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 08:40:22]  replicas=None
[2025-12-17 08:40:22]  scope=mc23_13p6TeV
[2025-12-17 08:40:22]  status=None
[2025-12-17 08:40:22]  status_code=0
[2025-12-17 08:40:22]  storage_token=
[2025-12-17 08:40:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931736449/log.47898763._020788.job.log.tgz.1
[2025-12-17 08:40:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/13/log.47898763._020788.job.log.tgz.1
[2025-12-17 08:40:22]  workdir=None
[2025-12-17 08:40:22] ]
[2025-12-17 08:40:22] 2025-12-17 13:39:15,541 | INFO     | transferring file log.47898763._020788.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931736449/log.47898763._020788.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-17 08:40:22] 2025-12-17 13:39:15,542 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931736449/log.47898763._020788.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._020788.job
[2025-12-17 08:40:22] 2025-12-17 13:39:15,565 | INFO     | adding to output.list: log.47898763._020788.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/13/log.47898763._020788.job.log.tg
[2025-12-17 08:40:22] 2025-12-17 13:39:15,565 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 08:40:22] 2025-12-17 13:39:15,566 | INFO     | summary of transferred files:
[2025-12-17 08:40:22] 2025-12-17 13:39:15,566 | INFO     |  -- lfn=log.47898763._020788.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 08:40:22] 2025-12-17 13:39:15,566 | INFO     | stage-out finished correctly
[2025-12-17 08:40:22] 2025-12-17 13:39:15,648 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 08:40:22] 2025-12-17 13:39:15,714 | INFO     | time since job start (5888s) is within the limit (174528.0s)
[2025-12-17 08:40:22] 2025-12-17 13:39:16,838 | INFO     | PID=7446 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 08:40:22] 2025-12-17 13:39:17,296 | INFO     | monitor loop #435: job 0:6931736449 is in state 'finished'
[2025-12-17 08:40:22] 2025-12-17 13:39:17,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 08:40:22] 2025-12-17 13:39:17,839 | INFO     | time since job start (5890s) is within the limit (174528.0s)
[2025-12-17 08:40:22] 2025-12-17 13:39:18,455 | INFO     | job 6931736449 has state=finished
[2025-12-17 08:40:22] 2025-12-17 13:39:18,455 | INFO     | preparing for final server update for job 6931736449 in state='finished'
[2025-12-17 08:40:22] 2025-12-17 13:39:18,456 | INFO     | this job has now completed (state=finished)
[2025-12-17 08:40:22] 2025-12-17 13:39:18,456 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 08:40:22] 2025-12-17 13:39:18,456 | INFO     | log transfer has been attempted: DONE
[2025-12-17 08:40:22] 2025-12-17 13:39:18,456 | INFO     | job 6931736449 has finished - writing final server update
[2025-12-17 08:40:22] 2025-12-17 13:39:18,456 | INFO     | total number of processed events: 400 (read)
[2025-12-17 08:40:22] 2025-12-17 13:39:18,457 | INFO     | executing command: lscpu
[2025-12-17 08:40:22] 2025-12-17 13:39:18,485 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 08:40:22] 2025-12-17 13:39:19,799 | INFO     | monitor loop #436: job 0:6931736449 is in state 'finished'
[2025-12-17 08:40:22] 2025-12-17 13:39:19,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 08:40:22] 2025-12-17 13:39:19,844 | INFO     | time since job start (5892s) is within the limit (174528.0s)
[2025-12-17 08:40:22] 2025-12-17 13:39:21,847 | INFO     | time since job start (5894s) is within the limit (174528.0s)
[2025-12-17 08:40:22] 2025-12-17 13:39:22,302 | INFO     | monitor loop #437: job 0:6931736449 is in state 'finished'
[2025-12-17 08:40:22] 2025-12-17 13:39:22,302 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,193 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-17 08:40:22] 2025-12-17 13:39:23,197 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-12-17 08:40:22] 2025-12-17 13:39:23,199 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931736449/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,200 | INFO     | extracted standard info from prmon json
[2025-12-17 08:40:22] 2025-12-17 13:39:23,200 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 08:40:22] 2025-12-17 13:39:23,200 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 08:40:22] 2025-12-17 13:39:23,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 08:40:22] 2025-12-17 13:39:23,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 08:40:22] 2025-12-17 13:39:23,202 | INFO     | fitting pss+swap vs Time
[2025-12-17 08:40:22] 2025-12-17 13:39:23,203 | INFO     | sum of square deviations: 218571540.0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,203 | INFO     | sum of deviations: -15509200224.0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,203 | INFO     | mean x: 1765975885.0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,203 | INFO     | mean y: 2786795.8314606743
[2025-12-17 08:40:22] 2025-12-17 13:39:23,203 | INFO     | intersect: 125311294899.03922
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | chi2: 0.07432103838676433
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | current memory leak: -70.96 B/s (using 89 data points, chi2=0.07)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | could have reported an average CPU frequency of 2142 MHz (7 samples)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | ..............................
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | . Timing measurements:
[2025-12-17 08:40:22] 2025-12-17 13:39:23,204 | INFO     | . get job = 0 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . initial setup = 2 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . payload setup = 7 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . stage-in = 0 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . payload execution = 5860 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . stage-out = 0 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | . log creation = 0 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,205 | INFO     | ..............................
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | 
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | job summary report
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | --------------------------------------------------
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | PanDA job id: 6931736449
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | task id: 47898763
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | errors: (none)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | pilot state: finished 
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | transexitcode: 0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | exeerrorcode: 0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | exeerrordiag: 
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | exitcode: 0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | exitmsg: OK
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | cpuconsumptiontime: 65097 s
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | nevents: 400
[2025-12-17 08:40:22] 2025-12-17 13:39:23,287 | INFO     | neventsw: 0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | pid: 13826
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | pgrp: 13826
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | corecount: 12
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | event service: False
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | sizes: {0: 2283956, 5: 2284218, 11: 2284274, 5870: 2310968, 5872: 2320022, 5879: 2320160}
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | --------------------------------------------------
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | 
[2025-12-17 08:40:22] 2025-12-17 13:39:23,288 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-17 08:40:22] 2025-12-17 13:39:23,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,315 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,315 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,315 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,315 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 08:40:22] 2025-12-17 13:39:23,316 | INFO     | job 6931736449 has completed (purged errors)
[2025-12-17 08:40:22] 2025-12-17 13:39:23,316 | INFO     | overall cleanup function is called
[2025-12-17 08:40:22] 2025-12-17 13:39:24,324 | INFO     | --- collectZombieJob: --- 10, [13826]
[2025-12-17 08:40:22] 2025-12-17 13:39:24,324 | INFO     | zombie collector waiting for pid 13826
[2025-12-17 08:40:22] 2025-12-17 13:39:24,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 08:40:22] 2025-12-17 13:39:24,324 | INFO     | collected zombie processes
[2025-12-17 08:40:22] 2025-12-17 13:39:24,325 | INFO     | will attempt to kill all subprocesses of pid=13826
[2025-12-17 08:40:22] 2025-12-17 13:39:24,418 | INFO     | process IDs to be killed: [13826] (in reverse order)
[2025-12-17 08:40:22] 2025-12-17 13:39:24,467 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 08:40:22] 2025-12-17 13:39:24,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 08:40:22] 2025-12-17 13:39:24,470 | INFO     | did not find any defunct processes belonging to 13826
[2025-12-17 08:40:22] 2025-12-17 13:39:24,473 | INFO     | did not find any defunct processes belonging to 13826
[2025-12-17 08:40:22] 2025-12-17 13:39:24,473 | INFO     | ready for new job
[2025-12-17 08:40:22] 2025-12-17 13:39:24,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 08:40:22] 2025-12-17 13:39:24,474 | INFO     | ***************************************
[2025-12-17 08:40:22] 2025-12-17 13:39:24,474 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 08:40:22] 2025-12-17 13:39:24,474 | INFO     | ***************************************
[2025-12-17 08:40:22] 2025-12-17 13:39:24,474 | INFO     | 
[2025-12-17 08:40:22] 2025-12-17 13:39:24,475 | INFO     | architecture information:
[2025-12-17 08:40:22] 2025-12-17 13:39:24,475 | INFO     | executing command: cat /etc/os-release
[2025-12-17 08:40:22] 2025-12-17 13:39:24,492 | INFO     | cat /etc/os-release:
[2025-12-17 08:40:22] NAME="CentOS Linux"
[2025-12-17 08:40:22] VERSION="7 (Core)"
[2025-12-17 08:40:22] ID="centos"
[2025-12-17 08:40:22] ID_LIKE="rhel fedora"
[2025-12-17 08:40:22] VERSION_ID="7"
[2025-12-17 08:40:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 08:40:22] ANSI_COLOR="0;31"
[2025-12-17 08:40:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 08:40:22] HOME_URL="https://www.centos.org/"
[2025-12-17 08:40:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 08:40:22] 
[2025-12-17 08:40:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 08:40:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 08:40:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 08:40:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 08:40:22] 
[2025-12-17 08:40:22] 2025-12-17 13:39:24,492 | INFO     | ***************************************
[2025-12-17 08:40:22] 2025-12-17 13:39:24,995 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-17 08:40:22] 2025-12-17 13:39:25,012 | INFO     | sufficient remaining disk space (29328670720 B)
[2025-12-17 08:40:22] 2025-12-17 13:39:25,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 08:40:22] 2025-12-17 13:39:25,013 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 08:40:22] 2025-12-17 13:39:25,013 | INFO     | update_server=False
[2025-12-17 08:40:22] 2025-12-17 13:39:25,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 08:40:22] 2025-12-17 13:39:25,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 08:40:22] 2025-12-17 13:39:25,754 | INFO     | all data control threads have been joined
[2025-12-17 08:40:22] 2025-12-17 13:39:25,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 08:40:22] 2025-12-17 13:39:25,810 | INFO     | aborting loop
[2025-12-17 08:40:22] 2025-12-17 13:39:26,018 | INFO     | [job] queue monitor thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,019 | INFO     | [job] retrieve thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,132 | INFO     | all payload control threads have been joined
[2025-12-17 08:40:22] 2025-12-17 13:39:26,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 08:40:22] 2025-12-17 13:39:26,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 08:40:22] 2025-12-17 13:39:26,305 | INFO     | [job] validate thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,491 | INFO     | [payload] validate_post thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,654 | INFO     | all job control threads have been joined
[2025-12-17 08:40:22] 2025-12-17 13:39:26,723 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,755 | INFO     | [data] control thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:26,816 | INFO     | [job] job monitor thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,075 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,138 | INFO     | [payload] control thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,231 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,278 | INFO     | [data] copytool_in thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,346 | INFO     | [payload] failed_post thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:27,658 | INFO     | [job] control thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:28,168 | INFO     | [data] copytool_out thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:30,238 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:35,388 | INFO     | job.realtimelogging is not enabled
[2025-12-17 08:40:22] 2025-12-17 13:39:36,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 08:40:22] 2025-12-17 13:39:55,047 | INFO     | PID=7446 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 08:40:22] 2025-12-17 13:39:55,047 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 08:40:22] 2025-12-17 13:39:55,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 08:40:22] 2025-12-17 13:39:55,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 08:40:22] 2025-12-17 13:40:16,538 | INFO     | [monitor] cgroup control has ended
[2025-12-17 08:40:22] 2025-12-17 13:40:17,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644071954240)>', '<ExcThread(monitor, started 140643192006400)>']
[2025-12-17 08:40:22] 2025-12-17 13:40:18,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 08:40:22] 2025-12-17 13:40:18,156 | INFO     | [monitor] control thread has ended
[2025-12-17 08:40:22] 2025-12-17 13:40:22,621 | INFO     | all workflow threads have been joined
[2025-12-17 08:40:22] 2025-12-17 13:40:22,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 08:40:22] 2025-12-17 13:40:22,621 | INFO     | traces error code: 0
[2025-12-17 08:40:22] 2025-12-17 13:40:22,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 08:40:22] 2025-12-17 13:40:22,710 [wrapper] ==== pilot stdout END ====
[2025-12-17 08:40:22] 2025-12-17 13:40:22,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 08:40:22] 2025-12-17 13:40:22,717 [wrapper] pilotpid: 7446
[2025-12-17 08:40:22] 2025-12-17 13:40:22,720 [wrapper] Pilot exit status: 0
[2025-12-17 08:40:22] 2025-12-17 13:40:22,736 [wrapper] pandaids: 6931736449
[2025-12-17 08:40:22] 2025-12-17 13:40:22,782 [wrapper] cleanup supervisor_pilot 13080 7447
[2025-12-17 08:40:22] 2025-12-17 13:40:22,786 [wrapper] Test setup, not cleaning
[2025-12-17 08:40:22] 2025-12-17 13:40:22,790 [wrapper] apfmon messages muted
[2025-12-17 08:40:22] 2025-12-17 13:40:22,794 [wrapper] ==== wrapper stdout END ====
[2025-12-17 08:40:22] 2025-12-17 13:40:22,798 [wrapper] ==== wrapper stderr END ====
[2025-12-17 08:40:22]  *** Error codes and diagnostics ***
[2025-12-17 08:40:22]     "exeErrorCode": 0,
[2025-12-17 08:40:22]     "exeErrorDiag": "",
[2025-12-17 08:40:22]     "pilotErrorCode": 0,
[2025-12-17 08:40:22]     "pilotErrorDiag": "",
[2025-12-17 08:40:22]  *** Listing of results directory ***
[2025-12-17 08:40:22] total 431064
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 20:05 pilot3.tar.gz
[2025-12-17 08:40:22] -rwx------ 1 boincer umatlas     36322 Dec 16 20:06 runpilot2-wrapper.sh
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 20:08 queuedata.json
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas       100 Dec 17 07:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 08:40:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 17 07:00 run_atlas
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas       105 Dec 17 07:00 job.xml
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas 221082554 Dec 17 07:00 EVNT.47898761._000807.pool.root.1
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 07:00 start_atlas.sh
[2025-12-17 08:40:22] drwxrwx--x 2 boincer umatlas      4096 Dec 17 07:00 shared
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas    592396 Dec 17 07:00 input.tar.gz
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas         0 Dec 17 07:00 boinc_lockfile
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas      2507 Dec 17 07:00 pandaJob.out
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas        57 Dec 17 07:00 setup.sh.local
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas    987423 Dec 17 07:01 agis_schedconf.cvmfs.json
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas   1516240 Dec 17 07:01 agis_ddmendpoints.agis.ALL.json
[2025-12-17 08:40:22] drwx------ 5 boincer umatlas      4096 Dec 17 07:01 pilot3
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas 213953954 Dec 17 08:38 HITS.47898763._020788.pool.root.1
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas       529 Dec 17 08:39 boinc_task_state.xml
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas      1045 Dec 17 08:39 memory_monitor_summary.json
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas    390001 Dec 17 08:39 log.47898763._020788.job.log.tgz.1
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas      7850 Dec 17 08:39 heartbeat.json
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas      5953 Dec 17 08:39 init_data.xml
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas        95 Dec 17 08:39 pilot_heartbeat.json
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 17 08:40 boinc_mmap_file
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas        27 Dec 17 08:40 wrapper_checkpoint.txt
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas      4817 Dec 17 08:40 pilotlog.txt
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas    838961 Dec 17 08:40 log.47898763._020788.job.log.1
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas       357 Dec 17 08:40 output.list
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas       620 Dec 17 08:40 runtime_log
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas   1249280 Dec 17 08:40 result.tar.gz
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas      9344 Dec 17 08:40 runtime_log.err
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas       659 Dec 17 08:40 qJ2LDmRBvp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf6aKDmj2LoWn.diag
[2025-12-17 08:40:22] -rw-r--r-- 1 boincer umatlas     21990 Dec 17 08:40 stderr.txt
[2025-12-17 08:40:22] HITS file was successfully produced:
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas 213953954 Dec 17 08:38 shared/HITS.pool.root.1
[2025-12-17 08:40:22]  *** Contents of shared directory: ***
[2025-12-17 08:40:22] total 426664
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas 221082554 Dec 17 07:00 ATLAS.root_0
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 07:00 start_atlas.sh
[2025-12-17 08:40:22] -rw-r--r-- 2 boincer umatlas    592396 Dec 17 07:00 input.tar.gz
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas 213953954 Dec 17 08:38 HITS.pool.root.1
[2025-12-17 08:40:22] -rw------- 1 boincer umatlas   1249280 Dec 17 08:40 result.tar.gz
08:40:24 (3657): run_atlas exited; CPU time 65080.940087
08:40:24 (3657): called boinc_finish(0)

</stderr_txt>
]]>

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