Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:16:29 (2515191): wrapper (7.7.26015): starting
21:16:29 (2515191): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 21:16:29] Arguments: --nthreads 4
[2025-12-17 21:16:29] Threads: 4
[2025-12-17 21:16:29] Checking for CVMFS
[2025-12-17 21:16:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 21:16:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 21:16:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 21:16:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 21:16:29] 2.9.2.0 639704 6501 98520 154122 3 9 19735468 36864001 0 130560 0 4728928 99.990 234340 17545 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 21:16:29] CVMFS is ok
[2025-12-17 21:16:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 21:16:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 21:16:29] Further information can be found at the LHC@home message board.
[2025-12-17 21:16:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 21:16:29] Checking for apptainer binary...
[2025-12-17 21:16:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 21:16:29] Running /usr/bin/apptainer --version
[2025-12-17 21:16:29] apptainer version 1.4.1-1.1
[2025-12-17 21:16:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 21:16:29] thA309
[2025-12-17 21:16:29] apptainer works
[2025-12-17 21:16:29] Set ATHENA_PROC_NUMBER=4
[2025-12-17 21:16:29] Set ATHENA_CORE_NUMBER=4
[2025-12-17 21:16:29] Starting ATLAS job with PandaID=6932314807
[2025-12-17 21:16:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 22:31:56]  *** The last 200 lines of the pilot log: ***
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | job 6932314807 has completed (purged errors)
[2025-12-17 22:31:56] 2025-12-17 21:31:23,590 | INFO     | overall cleanup function is called
[2025-12-17 22:31:56] 2025-12-17 21:31:24,597 | INFO     | --- collectZombieJob: --- 10, [2525551]
[2025-12-17 22:31:56] 2025-12-17 21:31:24,597 | INFO     | zombie collector waiting for pid 2525551
[2025-12-17 22:31:56] 2025-12-17 21:31:24,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 22:31:56] 2025-12-17 21:31:24,597 | INFO     | collected zombie processes
[2025-12-17 22:31:56] 2025-12-17 21:31:24,597 | INFO     | will attempt to kill all subprocesses of pid=2525551
[2025-12-17 22:31:56] 2025-12-17 21:31:24,649 | INFO     | process IDs to be killed: [2525551] (in reverse order)
[2025-12-17 22:31:56] 2025-12-17 21:31:24,686 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 22:31:56] 2025-12-17 21:31:24,687 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 22:31:56] 2025-12-17 21:31:24,689 | INFO     | did not find any defunct processes belonging to 2525551
[2025-12-17 22:31:56] 2025-12-17 21:31:24,690 | INFO     | did not find any defunct processes belonging to 2525551
[2025-12-17 22:31:56] 2025-12-17 21:31:24,690 | INFO     | ready for new job
[2025-12-17 22:31:56] 2025-12-17 21:31:24,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 22:31:56] 2025-12-17 21:31:24,691 | INFO     | ***************************************
[2025-12-17 22:31:56] 2025-12-17 21:31:24,691 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 22:31:56] 2025-12-17 21:31:24,691 | INFO     | ***************************************
[2025-12-17 22:31:56] 2025-12-17 21:31:24,691 | INFO     | 
[2025-12-17 22:31:56] 2025-12-17 21:31:24,692 | INFO     | architecture information:
[2025-12-17 22:31:56] 2025-12-17 21:31:24,692 | INFO     | executing command: cat /etc/os-release
[2025-12-17 22:31:56] 2025-12-17 21:31:24,707 | INFO     | cat /etc/os-release:
[2025-12-17 22:31:56] NAME="CentOS Linux"
[2025-12-17 22:31:56] VERSION="7 (Core)"
[2025-12-17 22:31:56] ID="centos"
[2025-12-17 22:31:56] ID_LIKE="rhel fedora"
[2025-12-17 22:31:56] VERSION_ID="7"
[2025-12-17 22:31:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 22:31:56] ANSI_COLOR="0;31"
[2025-12-17 22:31:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 22:31:56] HOME_URL="https://www.centos.org/"
[2025-12-17 22:31:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 22:31:56] 
[2025-12-17 22:31:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 22:31:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 22:31:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 22:31:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 22:31:56] 
[2025-12-17 22:31:56] 2025-12-17 21:31:24,707 | INFO     | ***************************************
[2025-12-17 22:31:56] 2025-12-17 21:31:25,210 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 22:31:56] 2025-12-17 21:31:25,229 | INFO     | sufficient remaining disk space (240258121728 B)
[2025-12-17 22:31:56] 2025-12-17 21:31:25,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | INFO     | update_server=False
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | INFO     | aborting loop
[2025-12-17 22:31:56] 2025-12-17 21:31:25,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 22:31:56] 2025-12-17 21:31:25,855 | INFO     | all payload control threads have been joined
[2025-12-17 22:31:56] 2025-12-17 21:31:25,953 | INFO     | all data control threads have been joined
[2025-12-17 22:31:56] 2025-12-17 21:31:26,191 | INFO     | all job control threads have been joined
[2025-12-17 22:31:56] 2025-12-17 21:31:26,233 | INFO     | [job] job monitor thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,235 | INFO     | [job] retrieve thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,339 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,476 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,861 | INFO     | [payload] control thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,950 | INFO     | [data] copytool_in thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:26,958 | INFO     | [data] control thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,119 | INFO     | [payload] validate_post thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,192 | INFO     | [job] control thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,236 | INFO     | [data] copytool_out thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 22:31:56] 2025-12-17 21:31:27,550 | INFO     | [payload] failed_post thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,585 | INFO     | [job] validate thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:27,711 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:28,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 22:31:56] 2025-12-17 21:31:29,154 | INFO     | [job] queue monitor thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:31,444 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:35,536 | INFO     | job.realtimelogging is not enabled
[2025-12-17 22:31:56] 2025-12-17 21:31:36,379 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-12-17 22:31:56] 2025-12-17 21:31:36,542 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 22:31:56] 2025-12-17 21:31:42,325 | INFO     | [monitor] cgroup control has ended
[2025-12-17 22:31:56] 2025-12-17 21:31:43,547 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567972767552)>', '<ExcThread(monitor, started 140567317026560)>']
[2025-12-17 22:31:56] 2025-12-17 21:31:48,572 | INFO     | all workflow threads have been joined
[2025-12-17 22:31:56] 2025-12-17 21:31:48,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 22:31:56] 2025-12-17 21:31:48,573 | INFO     | traces error code: 0
[2025-12-17 22:31:56] 2025-12-17 21:31:48,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 22:31:56] 2025-12-17 21:31:55,805 | INFO     | PID=2518980 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 22:31:56] 2025-12-17 21:31:55,806 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 22:31:56] 2025-12-17 21:31:55,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 22:31:56] 2025-12-17 21:31:55,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 22:31:56] 2025-12-17 21:31:55,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 22:31:56] 2025-12-17 21:31:55,806 | INFO     | [monitor] control thread has ended
[2025-12-17 22:31:56] 2025-12-17 21:31:55,885 [wrapper] ==== pilot stdout END ====
[2025-12-17 22:31:56] 2025-12-17 21:31:55,889 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 22:31:56] 2025-12-17 21:31:55,893 [wrapper] pilotpid: 2518980
[2025-12-17 22:31:56] 2025-12-17 21:31:55,897 [wrapper] Pilot exit status: 0
[2025-12-17 22:31:56] 2025-12-17 21:31:55,909 [wrapper] pandaids: 6932314807
[2025-12-17 22:31:56] 2025-12-17 21:31:55,933 [wrapper] cleanup supervisor_pilot 2541125 2518981
[2025-12-17 22:31:56] 2025-12-17 21:31:55,937 [wrapper] Test setup, not cleaning
[2025-12-17 22:31:56] 2025-12-17 21:31:55,942 [wrapper] apfmon messages muted
[2025-12-17 22:31:56] 2025-12-17 21:31:55,946 [wrapper] ==== wrapper stdout END ====
[2025-12-17 22:31:56] 2025-12-17 21:31:55,950 [wrapper] ==== wrapper stderr END ====
[2025-12-17 22:31:56]  *** Error codes and diagnostics ***
[2025-12-17 22:31:56]     "exeErrorCode": 0,
[2025-12-17 22:31:56]     "exeErrorDiag": "",
[2025-12-17 22:31:56]     "pilotErrorCode": 0,
[2025-12-17 22:31:56]     "pilotErrorDiag": "",
[2025-12-17 22:31:56]  *** Listing of results directory ***
[2025-12-17 22:31:56] total 338764
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc    579449 Dec 17 06:30 pilot3.tar.gz
[2025-12-17 22:31:56] -rwx------ 1 boinc boinc     36322 Dec 17 06:34 runpilot2-wrapper.sh
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc      5112 Dec 17 06:37 queuedata.json
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc       100 Dec 17 21:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 22:31:56] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 21:16 run_atlas
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc       105 Dec 17 21:16 job.xml
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc 194141231 Dec 17 21:16 EVNT.47886829._000641.pool.root.1
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc    592413 Dec 17 21:16 input.tar.gz
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc     15847 Dec 17 21:16 start_atlas.sh
[2025-12-17 22:31:56] drwxrwx--x 2 boinc boinc      4096 Dec 17 21:16 shared
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc         0 Dec 17 21:16 boinc_setup_complete
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc      6377 Dec 17 21:16 init_data.xml
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc         0 Dec 17 21:16 boinc_lockfile
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc      2539 Dec 17 21:16 pandaJob.out
[2025-12-17 22:31:56] -rw------- 1 boinc boinc    988150 Dec 17 21:16 agis_schedconf.cvmfs.json
[2025-12-17 22:31:56] -rw------- 1 boinc boinc   1516240 Dec 17 21:16 agis_ddmendpoints.agis.ALL.json
[2025-12-17 22:31:56] drwx------ 5 boinc boinc      4096 Dec 17 21:16 pilot3
[2025-12-17 22:31:56] -rw------- 1 boinc boinc 146986907 Dec 17 22:30 HITS.47886831._017610.pool.root.1
[2025-12-17 22:31:56] -rw------- 1 boinc boinc        95 Dec 17 22:31 pilot_heartbeat.json
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc       529 Dec 17 22:31 boinc_task_state.xml
[2025-12-17 22:31:56] -rw------- 1 boinc boinc      1023 Dec 17 22:31 memory_monitor_summary.json
[2025-12-17 22:31:56] -rw------- 1 boinc boinc    273690 Dec 17 22:31 log.47886831._017610.job.log.tgz.1
[2025-12-17 22:31:56] -rw------- 1 boinc boinc      7760 Dec 17 22:31 heartbeat.json
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc        27 Dec 17 22:31 wrapper_checkpoint.txt
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc      8192 Dec 17 22:31 boinc_mmap_file
[2025-12-17 22:31:56] -rw------- 1 boinc boinc       747 Dec 17 22:31 pilotlog.txt
[2025-12-17 22:31:56] -rw------- 1 boinc boinc    662922 Dec 17 22:31 log.47886831._017610.job.log.1
[2025-12-17 22:31:56] -rw------- 1 boinc boinc       357 Dec 17 22:31 output.list
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc       620 Dec 17 22:31 runtime_log
[2025-12-17 22:31:56] -rw------- 1 boinc boinc    952320 Dec 17 22:31 result.tar.gz
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc      8897 Dec 17 22:31 runtime_log.err
[2025-12-17 22:31:56] -rw------- 1 boinc boinc       658 Dec 17 22:31 6HSLDmMMzp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrcbKDmym1j6m.diag
[2025-12-17 22:31:56] -rw-r--r-- 1 boinc boinc     11509 Dec 17 22:31 stderr.txt
[2025-12-17 22:31:56] HITS file was successfully produced:
[2025-12-17 22:31:56] -rw------- 1 boinc boinc 146986907 Dec 17 22:30 shared/HITS.pool.root.1
[2025-12-17 22:31:56]  *** Contents of shared directory: ***
[2025-12-17 22:31:56] total 334672
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc 194141231 Dec 17 21:16 ATLAS.root_0
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc    592413 Dec 17 21:16 input.tar.gz
[2025-12-17 22:31:56] -rw-r--r-- 2 boinc boinc     15847 Dec 17 21:16 start_atlas.sh
[2025-12-17 22:31:56] -rw------- 1 boinc boinc 146986907 Dec 17 22:30 HITS.pool.root.1
[2025-12-17 22:31:56] -rw------- 1 boinc boinc    952320 Dec 17 22:31 result.tar.gz
22:31:58 (2515191): run_atlas exited; CPU time 16808.363933
22:31:58 (2515191): called boinc_finish(0)

</stderr_txt>
]]>

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