Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:09 (382880): wrapper (7.7.26015): starting
15:44:09 (382880): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 15:44:09] Arguments: --nthreads 4
[2025-12-18 15:44:09] Threads: 4
[2025-12-18 15:44:09] Checking for CVMFS
[2025-12-18 15:44:09] No cvmfs_config command found, will try listing directly
[2025-12-18 15:44:09] CVMFS is ok
[2025-12-18 15:44:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 15:44:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 15:44:09] Further information can be found at the LHC@home message board.
[2025-12-18 15:44:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 15:44:09] Checking for apptainer binary...
[2025-12-18 15:44:09] which: no apptainer in ((null))
[2025-12-18 15:44:09] apptainer is not installed, using version from CVMFS
[2025-12-18 15:44:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 15:44:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-12-18 15:44:10] apptainer works
[2025-12-18 15:44:10] Set ATHENA_PROC_NUMBER=4
[2025-12-18 15:44:10] Set ATHENA_CORE_NUMBER=4
[2025-12-18 15:44:10] Starting ATLAS job with PandaID=6932314480
[2025-12-18 15:44:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 18:39:04]  *** The last 200 lines of the pilot log: ***
[2025-12-18 18:39:04] 2025-12-18 17:32:57,360 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 18:39:04] 2025-12-18 17:32:57,418 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2719.2874999999995
[2025-12-18 18:39:04] 2025-12-18 17:32:57,449 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6932314480/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,450 | INFO     | extracted standard info from prmon json
[2025-12-18 18:39:04] 2025-12-18 17:32:57,450 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 18:39:04] 2025-12-18 17:32:57,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 18:39:04] 2025-12-18 17:32:57,450 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 18:39:04] 2025-12-18 17:32:57,450 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 18:39:04] 2025-12-18 17:32:57,454 | INFO     | fitting pss+swap vs Time
[2025-12-18 18:39:04] 2025-12-18 17:32:57,454 | INFO     | sum of square deviations: 1418361477.5
[2025-12-18 18:39:04] 2025-12-18 17:32:57,455 | INFO     | sum of deviations: -23959097978.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,455 | INFO     | mean x: 1766074132.5
[2025-12-18 18:39:04] 2025-12-18 17:32:57,455 | INFO     | mean y: 2333707.4698795183
[2025-12-18 18:39:04] 2025-12-18 17:32:57,455 | INFO     | intersect: 29835027169.760315
[2025-12-18 18:39:04] 2025-12-18 17:32:57,456 | INFO     | chi2: 2.4974806986905556
[2025-12-18 18:39:04] 2025-12-18 17:32:57,456 | INFO     | sum of square deviations: 1294014960.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,457 | INFO     | sum of deviations: -11727070050.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,457 | INFO     | mean x: 1766073980.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,457 | INFO     | mean y: 2348365.49689441
[2025-12-18 18:39:04] 2025-12-18 17:32:57,457 | INFO     | intersect: 16007474980.835485
[2025-12-18 18:39:04] 2025-12-18 17:32:57,458 | INFO     | chi2: 1.5028574676961175
[2025-12-18 18:39:04] 2025-12-18 17:32:57,458 | INFO     | current chi2=1.5028574676961175 (change=39.825061771885764 %)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,458 | INFO     | sum of square deviations: 1177156955.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,459 | INFO     | sum of deviations: -11188605238.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,459 | INFO     | mean x: 1766073827.5
[2025-12-18 18:39:04] 2025-12-18 17:32:57,459 | INFO     | mean y: 2349068.3846153845
[2025-12-18 18:39:04] 2025-12-18 17:32:57,459 | INFO     | intersect: 16788473291.777756
[2025-12-18 18:39:04] 2025-12-18 17:32:57,460 | INFO     | chi2: 1.5007536023914279
[2025-12-18 18:39:04] 2025-12-18 17:32:57,460 | INFO     | current chi2=1.5007536023914279 (change=0.13999100712557083 %)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,460 | INFO     | right removable region: 155
[2025-12-18 18:39:04] 2025-12-18 17:32:57,460 | INFO     | sum of square deviations: 1294014960.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,461 | INFO     | sum of deviations: -39109931498.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,461 | INFO     | mean x: 1766074285.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,461 | INFO     | mean y: 2351838.596273292
[2025-12-18 18:39:04] 2025-12-18 17:32:57,461 | INFO     | intersect: 53379666971.59082
[2025-12-18 18:39:04] 2025-12-18 17:32:57,462 | INFO     | chi2: 1.315852387732641
[2025-12-18 18:39:04] 2025-12-18 17:32:57,462 | INFO     | current chi2=1.315852387732641 (change=47.31281052852379 %)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,462 | INFO     | sum of square deviations: 1177156955.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,463 | INFO     | sum of deviations: -30787637844.5
[2025-12-18 18:39:04] 2025-12-18 17:32:57,463 | INFO     | mean x: 1766074437.5
[2025-12-18 18:39:04] 2025-12-18 17:32:57,463 | INFO     | mean y: 2340969.0833333335
[2025-12-18 18:39:04] 2025-12-18 17:32:57,463 | INFO     | intersect: 46192664151.75446
[2025-12-18 18:39:04] 2025-12-18 17:32:57,463 | INFO     | chi2: 1.2716721668904891
[2025-12-18 18:39:04] 2025-12-18 17:32:57,464 | INFO     | current chi2=1.2716721668904891 (change=3.3575362444931374 %)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,464 | INFO     | left removable region: 20
[2025-12-18 18:39:04] 2025-12-18 17:32:57,464 | INFO     | sum of square deviations: 762879420.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | sum of deviations: -2805451732.000001
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | mean x: 1766074407.0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | mean y: 2332180.1481481483
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | intersect: 6496984380.831481
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | chi2: 0.08023395861281984
[2025-12-18 18:39:04] 2025-12-18 17:32:57,465 | INFO     | current memory leak: -3.68 B/s (using 135 data points, chi2=0.08)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,466 | INFO     | could have reported an average CPU frequency of 2686 MHz (9 samples)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,466 | INFO     | ..............................
[2025-12-18 18:39:04] 2025-12-18 17:32:57,466 | INFO     | . Timing measurements:
[2025-12-18 18:39:04] 2025-12-18 17:32:57,466 | INFO     | . get job = 0 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,466 | INFO     | . initial setup = 1 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | . payload setup = 8 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | . stage-in = 0 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | . payload execution = 10072 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | . stage-out = 0 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | . log creation = 0 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,467 | INFO     | ..............................
[2025-12-18 18:39:04] 2025-12-18 17:32:57,562 | INFO     | 
[2025-12-18 18:39:04] 2025-12-18 17:32:57,562 | INFO     | job summary report
[2025-12-18 18:39:04] 2025-12-18 17:32:57,562 | INFO     | --------------------------------------------------
[2025-12-18 18:39:04] 2025-12-18 17:32:57,562 | INFO     | PanDA job id: 6932314480
[2025-12-18 18:39:04] 2025-12-18 17:32:57,562 | INFO     | task id: 47886831
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | errors: (none)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | pilot state: finished 
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | transexitcode: 0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | exeerrorcode: 0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | exeerrordiag: 
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | exitcode: 0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | exitmsg: OK
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | cpuconsumptiontime: 38367 s
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | nevents: 400
[2025-12-18 18:39:04] 2025-12-18 17:32:57,563 | INFO     | neventsw: 0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | pid: 399116
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | pgrp: 399116
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | corecount: 4
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | event service: False
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | sizes: {0: 2284005, 7: 2284267, 11: 2284295, 10085: 2313450, 10087: 2322528, 10094: 2322730}
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | --------------------------------------------------
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | 
[2025-12-18 18:39:04] 2025-12-18 17:32:57,564 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | job 6932314480 has completed (purged errors)
[2025-12-18 18:39:04] 2025-12-18 17:32:57,600 | INFO     | overall cleanup function is called
[2025-12-18 18:39:04] 2025-12-18 17:32:57,990 | INFO     | PID=389484 has CPU usage=22.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 18:39:04] 2025-12-18 17:32:57,990 | INFO     | .. there are 6 such processes running
[2025-12-18 18:39:04] 2025-12-18 17:32:58,609 | INFO     | --- collectZombieJob: --- 10, [399116]
[2025-12-18 18:39:04] 2025-12-18 17:32:58,609 | INFO     | zombie collector waiting for pid 399116
[2025-12-18 18:39:04] 2025-12-18 17:32:58,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 18:39:04] 2025-12-18 17:32:58,609 | INFO     | collected zombie processes
[2025-12-18 18:39:04] 2025-12-18 17:32:58,609 | INFO     | will attempt to kill all subprocesses of pid=399116
[2025-12-18 18:39:04] 2025-12-18 17:32:59,357 | INFO     | process IDs to be killed: [399116] (in reverse order)
[2025-12-18 18:39:04] 2025-12-18 17:32:59,603 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 18:39:04] 2025-12-18 17:32:59,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 18:39:04] 2025-12-18 17:32:59,635 | INFO     | did not find any defunct processes belonging to 399116
[2025-12-18 18:39:04] 2025-12-18 17:32:59,662 | INFO     | did not find any defunct processes belonging to 399116
[2025-12-18 18:39:04] 2025-12-18 17:32:59,662 | INFO     | ready for new job
[2025-12-18 18:39:04] 2025-12-18 17:32:59,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 18:39:04] 2025-12-18 17:32:59,664 | INFO     | ***************************************
[2025-12-18 18:39:04] 2025-12-18 17:32:59,664 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 18:39:04] 2025-12-18 17:32:59,664 | INFO     | ***************************************
[2025-12-18 18:39:04] 2025-12-18 17:32:59,664 | INFO     | 
[2025-12-18 18:39:04] 2025-12-18 17:32:59,672 | INFO     | architecture information:
[2025-12-18 18:39:04] 2025-12-18 17:32:59,672 | INFO     | executing command: cat /etc/os-release
[2025-12-18 18:39:04] 2025-12-18 17:32:59,696 | INFO     | cat /etc/os-release:
[2025-12-18 18:39:04] NAME="CentOS Linux"
[2025-12-18 18:39:04] VERSION="7 (Core)"
[2025-12-18 18:39:04] ID="centos"
[2025-12-18 18:39:04] ID_LIKE="rhel fedora"
[2025-12-18 18:39:04] VERSION_ID="7"
[2025-12-18 18:39:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 18:39:04] ANSI_COLOR="0;31"
[2025-12-18 18:39:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 18:39:04] HOME_URL="https://www.centos.org/"
[2025-12-18 18:39:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 18:39:04] 
[2025-12-18 18:39:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 18:39:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 18:39:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 18:39:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 18:39:04] 
[2025-12-18 18:39:04] 2025-12-18 17:32:59,697 | INFO     | ***************************************
[2025-12-18 18:39:04] 2025-12-18 17:33:00,200 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-12-18 18:39:04] 2025-12-18 17:33:00,226 | INFO     | sufficient remaining disk space (3317495234560 B)
[2025-12-18 18:39:04] 2025-12-18 17:33:00,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 18:39:04] 2025-12-18 17:33:00,227 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 18:39:04] 2025-12-18 17:33:00,227 | INFO     | update_server=False
[2025-12-18 18:39:04] 2025-12-18 17:33:00,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 18:39:04] 2025-12-18 17:33:00,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 18:39:04] 2025-12-18 17:33:00,228 | INFO     | aborting loop
[2025-12-18 18:39:04] 2025-12-18 17:33:00,300 | INFO     | all job control threads have been joined
[2025-12-18 18:39:04] 2025-12-18 17:33:00,720 | INFO     | all data control threads have been joined
[2025-12-18 18:39:04] 2025-12-18 17:33:01,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 18:39:04] 2025-12-18 17:33:01,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 18:39:04] 2025-12-18 17:33:01,232 | INFO     | [job] retrieve thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,233 | INFO     | [job] job monitor thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,286 | INFO     | [payload] validate_post thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,306 | INFO     | [job] control thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,491 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:01,673 | INFO     | all payload control threads have been joined
[2025-12-18 18:39:04] 2025-12-18 17:33:01,726 | INFO     | [data] control thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,080 | INFO     | [job] validate thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,094 | INFO     | [data] copytool_in thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,438 | INFO     | [payload] failed_post thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 18:39:04] 2025-12-18 17:33:02,620 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,679 | INFO     | [payload] control thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:02,700 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:03,048 | INFO     | [data] copytool_out thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:03,572 | INFO     | [job] queue monitor thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:05,132 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 18:39:04] 2025-12-18 17:33:31,010 | INFO     | PID=389484 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-18 18:39:04] 2025-12-18 17:33:31,010 | INFO     | .. there are 6 such processes running
[2025-12-18 18:39:04] 2025-12-18 17:33:31,011 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 18:39:04] 2025-12-18 17:33:31,011 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 18:39:04] 2025-12-18 17:33:31,011 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 18:39:04] 2025-12-18 17:33:40,314 | INFO     | [monitor] cgroup control has ended
[2025-12-18 18:39:04] 2025-12-18 17:33:40,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22458184824640)>', '<ExcThread(monitor, started 22457947752192)>']
[2025-12-18 18:39:04] 2025-12-18 17:33:41,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 18:39:04] 2025-12-18 17:33:41,062 | INFO     | [monitor] control thread has ended
[2025-12-18 18:39:04] 2025-12-18 17:33:45,927 | INFO     | all workflow threads have been joined
[2025-12-18 18:39:04] 2025-12-18 17:33:45,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 18:39:04] 2025-12-18 17:33:45,929 | INFO     | traces error code: 0
[2025-12-18 18:39:04] 2025-12-18 17:33:45,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 18:39:04] 2025-12-18 17:33:46,148 [wrapper] ==== pilot stdout END ====
[2025-12-18 18:39:04] 2025-12-18 17:33:46,152 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 18:39:04] 2025-12-18 17:33:46,157 [wrapper] pilotpid: 389484
[2025-12-18 18:39:04] 2025-12-18 17:33:46,161 [wrapper] Pilot exit status: 0
[2025-12-18 18:39:04] 2025-12-18 17:33:46,178 [wrapper] pandaids: 6932314480
[2025-12-18 18:39:04] 2025-12-18 17:33:46,353 [wrapper] cleanup supervisor_pilot  677057 389485
[2025-12-18 18:39:04] 2025-12-18 17:33:46,357 [wrapper] Test setup, not cleaning
[2025-12-18 18:39:04] 2025-12-18 17:33:46,361 [wrapper] apfmon messages muted
[2025-12-18 18:39:04] 2025-12-18 17:33:46,365 [wrapper] ==== wrapper stdout END ====
[2025-12-18 18:39:04] 2025-12-18 17:33:46,368 [wrapper] ==== wrapper stderr END ====
[2025-12-18 18:39:04]  *** Error codes and diagnostics ***
[2025-12-18 18:39:04]     "exeErrorCode": 0,
[2025-12-18 18:39:04]     "exeErrorDiag": "",
[2025-12-18 18:39:04]     "pilotErrorCode": 0,
[2025-12-18 18:39:04]     "pilotErrorDiag": "",
[2025-12-18 18:39:04]  *** Listing of results directory ***
[2025-12-18 18:39:04] total 337528
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc    579449 Dec 17 06:30 pilot3.tar.gz
[2025-12-18 18:39:04] -rwx------ 1 boinc boinc     36322 Dec 17 06:33 runpilot2-wrapper.sh
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc      5112 Dec 17 06:35 queuedata.json
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc       100 Dec 18 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 18:39:04] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 15:44 run_atlas
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc       105 Dec 18 15:44 job.xml
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc      6692 Dec 18 15:44 init_data.xml
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc 191476362 Dec 18 15:44 EVNT.47886829._000633.pool.root.1
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc     15847 Dec 18 15:44 start_atlas.sh
[2025-12-18 18:39:04] drwxrwx--x 2 boinc boinc      4096 Dec 18 15:44 shared
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc    592419 Dec 18 15:44 input.tar.gz
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc         0 Dec 18 15:44 boinc_lockfile
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc      2539 Dec 18 15:44 pandaJob.out
[2025-12-18 18:39:04] -rw------- 1 boinc boinc    988133 Dec 18 15:44 agis_schedconf.cvmfs.json
[2025-12-18 18:39:04] -rw------- 1 boinc boinc   1516240 Dec 18 15:44 agis_ddmendpoints.agis.ALL.json
[2025-12-18 18:39:04] drwx------ 5 boinc boinc      4096 Dec 18 15:44 pilot3
[2025-12-18 18:39:04] -rw------- 1 boinc boinc 146707723 Dec 18 18:32 HITS.47886831._017407.pool.root.1
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc       529 Dec 18 18:32 boinc_task_state.xml
[2025-12-18 18:39:04] -rw------- 1 boinc boinc        95 Dec 18 18:32 pilot_heartbeat.json
[2025-12-18 18:39:04] -rw------- 1 boinc boinc      1033 Dec 18 18:32 memory_monitor_summary.json
[2025-12-18 18:39:04] -rw------- 1 boinc boinc    351400 Dec 18 18:32 log.47886831._017407.job.log.tgz.1
[2025-12-18 18:39:04] -rw------- 1 boinc boinc      7789 Dec 18 18:32 heartbeat.json
[2025-12-18 18:39:04] -rw------- 1 boinc boinc      4834 Dec 18 18:33 pilotlog.txt
[2025-12-18 18:39:04] -rw------- 1 boinc boinc   1413407 Dec 18 18:33 log.47886831._017407.job.log.1
[2025-12-18 18:39:04] -rw------- 1 boinc boinc       357 Dec 18 18:33 output.list
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc       620 Dec 18 18:33 runtime_log
[2025-12-18 18:39:04] -rw------- 1 boinc boinc   1781760 Dec 18 18:33 result.tar.gz
[2025-12-18 18:39:04] -rw------- 1 boinc boinc       664 Dec 18 18:33 xEsNDmNLzp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVYbKDmY5EeLo.diag
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc      9223 Dec 18 18:33 runtime_log.err
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc        26 Dec 18 18:38 wrapper_checkpoint.txt
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc      8192 Dec 18 18:39 boinc_mmap_file
[2025-12-18 18:39:04] -rw-r--r-- 1 boinc boinc     20923 Dec 18 18:39 stderr.txt
[2025-12-18 18:39:04] HITS file was successfully produced:
[2025-12-18 18:39:04] -rw------- 1 boinc boinc 146707723 Dec 18 18:32 shared/HITS.pool.root.1
[2025-12-18 18:39:04]  *** Contents of shared directory: ***
[2025-12-18 18:39:04] total 332608
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc 191476362 Dec 18 15:44 ATLAS.root_0
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc     15847 Dec 18 15:44 start_atlas.sh
[2025-12-18 18:39:04] -rw-r--r-- 2 boinc boinc    592419 Dec 18 15:44 input.tar.gz
[2025-12-18 18:39:04] -rw------- 1 boinc boinc 146707723 Dec 18 18:32 HITS.pool.root.1
[2025-12-18 18:39:04] -rw------- 1 boinc boinc   1781760 Dec 18 18:33 result.tar.gz
18:39:05 (382880): run_atlas exited; CPU time 39077.537601
18:39:05 (382880): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN