Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
14:54:21 (297621): wrapper (7.7.26015): starting
14:54:21 (297621): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 14:54:21] Arguments: --nthreads 4
[2025-12-17 14:54:21] Threads: 4
[2025-12-17 14:54:21] Checking for CVMFS
[2025-12-17 14:54:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 14:54:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 14:54:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 14:54:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 14:54:22] 2.13.1.0 45898 5354 104752 154112 1 188 7119747 10240000 1822 130560 0 10591106 99.996 200703 292 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 14:54:22] CVMFS is ok
[2025-12-17 14:54:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 14:54:22] Checking for apptainer binary...
[2025-12-17 14:54:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 14:54:22] Running /usr/bin/apptainer --version
[2025-12-17 14:54:22] apptainer version 1.4.4
[2025-12-17 14:54:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 14:54:22] ellievl
[2025-12-17 14:54:22] apptainer works
[2025-12-17 14:54:22] Set ATHENA_PROC_NUMBER=4
[2025-12-17 14:54:22] Set ATHENA_CORE_NUMBER=4
[2025-12-17 14:54:22] Starting ATLAS job with PandaID=6932314449
[2025-12-17 14:54:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 16:26:14]  *** The last 200 lines of the pilot log: ***
[2025-12-17 16:26:14]  workdir=None
[2025-12-17 16:26:14] ]
[2025-12-17 16:26:14] 2025-12-17 15:25:29,199 | INFO     | transferring file log.47886831._017376.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6932314449/log.47886831._017376.job.log.tgz.1 to /var/li
[2025-12-17 16:26:14] 2025-12-17 15:25:29,199 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6932314449/log.47886831._017376.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-17 16:26:14] 2025-12-17 15:25:29,229 | INFO     | adding to output.list: log.47886831._017376.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/02/log.47886831._017376.job.log.tg
[2025-12-17 16:26:14] 2025-12-17 15:25:29,231 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 16:26:14] 2025-12-17 15:25:29,231 | INFO     | summary of transferred files:
[2025-12-17 16:26:14] 2025-12-17 15:25:29,231 | INFO     |  -- lfn=log.47886831._017376.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 16:26:14] 2025-12-17 15:25:29,231 | INFO     | stage-out finished correctly
[2025-12-17 16:26:14] 2025-12-17 15:25:30,583 | INFO     | time since job start (5451s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:31,479 | INFO     | monitor loop #405: job 0:6932314449 is in state 'finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:31,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:26:14] 2025-12-17 15:25:32,517 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 16:26:14] 2025-12-17 15:25:32,589 | INFO     | time since job start (5453s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:33,984 | INFO     | monitor loop #406: job 0:6932314449 is in state 'finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:33,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:26:14] 2025-12-17 15:25:34,596 | INFO     | time since job start (5455s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:34,853 | INFO     | job 6932314449 has state=finished
[2025-12-17 16:26:14] 2025-12-17 15:25:34,853 | INFO     | preparing for final server update for job 6932314449 in state='finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:34,854 | INFO     | this job has now completed (state=finished)
[2025-12-17 16:26:14] 2025-12-17 15:25:34,854 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 16:26:14] 2025-12-17 15:25:34,854 | INFO     | log transfer has been attempted: DONE
[2025-12-17 16:26:14] 2025-12-17 15:25:34,854 | INFO     | job 6932314449 has finished - writing final server update
[2025-12-17 16:26:14] 2025-12-17 15:25:34,855 | INFO     | total number of processed events: 400 (read)
[2025-12-17 16:26:14] 2025-12-17 15:25:34,855 | INFO     | executing command: lscpu
[2025-12-17 16:26:14] 2025-12-17 15:25:34,892 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 16:26:14] 2025-12-17 15:25:36,489 | INFO     | monitor loop #407: job 0:6932314449 is in state 'finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:36,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:26:14] 2025-12-17 15:25:36,602 | INFO     | time since job start (5457s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:38,608 | INFO     | time since job start (5459s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:38,994 | INFO     | monitor loop #408: job 0:6932314449 is in state 'finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:38,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:26:14] 2025-12-17 15:25:39,896 | INFO     | PID=301470 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 16:26:14] 2025-12-17 15:25:39,896 | INFO     | .. there are 3 such processes running
[2025-12-17 16:26:14] 2025-12-17 15:25:40,897 | INFO     | time since job start (5461s) is within the limit (174528.0s)
[2025-12-17 16:26:14] 2025-12-17 15:25:41,498 | INFO     | monitor loop #409: job 0:6932314449 is in state 'finished'
[2025-12-17 16:26:14] 2025-12-17 15:25:41,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,203 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 16:26:14] 2025-12-17 15:25:42,205 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.0359999999987
[2025-12-17 16:26:14] 2025-12-17 15:25:42,209 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6932314449/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,210 | INFO     | extracted standard info from prmon json
[2025-12-17 16:26:14] 2025-12-17 15:25:42,210 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 16:26:14] 2025-12-17 15:25:42,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 16:26:14] 2025-12-17 15:25:42,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 16:26:14] 2025-12-17 15:25:42,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 16:26:14] 2025-12-17 15:25:42,213 | INFO     | fitting pss+swap vs Time
[2025-12-17 16:26:14] 2025-12-17 15:25:42,213 | INFO     | sum of square deviations: 170944600.5
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | sum of deviations: -293203667.49999994
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | mean x: 1765982491.5
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | mean y: 2461788.9146341463
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | intersect: 3031469676.4646564
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | chi2: 0.006282850080597417
[2025-12-17 16:26:14] 2025-12-17 15:25:42,214 | INFO     | current memory leak: -1.72 B/s (using 82 data points, chi2=0.01)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | ..............................
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | . Timing measurements:
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | . get job = 0 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | . initial setup = 1 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,215 | INFO     | . payload setup = 10 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,216 | INFO     | . stage-in = 0 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,216 | INFO     | . payload execution = 5409 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,216 | INFO     | . stage-out = 7 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,216 | INFO     | . log creation = 0 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,216 | INFO     | ..............................
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | 
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | job summary report
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | --------------------------------------------------
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | PanDA job id: 6932314449
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | task id: 47886831
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | errors: (none)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | pilot state: finished 
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | transexitcode: 0
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | exeerrorcode: 0
[2025-12-17 16:26:14] 2025-12-17 15:25:42,260 | INFO     | exeerrordiag: 
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | exitcode: 0
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | exitmsg: OK
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | cpuconsumptiontime: 20555 s
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | nevents: 400
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | neventsw: 0
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | pid: 308104
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | pgrp: 308104
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | corecount: 4
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | event service: False
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | sizes: {0: 2284007, 8: 2284269, 11: 2284297, 5423: 2310934, 5432: 2320154, 5435: 2320210, 5445: 2320362}
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | --------------------------------------------------
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | 
[2025-12-17 16:26:14] 2025-12-17 15:25:42,261 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2025-12-17 16:26:14] 2025-12-17 15:25:42,290 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,293 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,293 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 16:26:14] 2025-12-17 15:25:42,293 | INFO     | job 6932314449 has completed (purged errors)
[2025-12-17 16:26:14] 2025-12-17 15:25:42,293 | INFO     | overall cleanup function is called
[2025-12-17 16:26:14] 2025-12-17 15:25:43,301 | INFO     | --- collectZombieJob: --- 10, [308104]
[2025-12-17 16:26:14] 2025-12-17 15:25:43,301 | INFO     | zombie collector waiting for pid 308104
[2025-12-17 16:26:14] 2025-12-17 15:25:43,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 16:26:14] 2025-12-17 15:25:43,301 | INFO     | collected zombie processes
[2025-12-17 16:26:14] 2025-12-17 15:25:43,301 | INFO     | will attempt to kill all subprocesses of pid=308104
[2025-12-17 16:26:14] 2025-12-17 15:25:43,515 | INFO     | process IDs to be killed: [308104] (in reverse order)
[2025-12-17 16:26:14] 2025-12-17 15:25:43,607 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 16:26:14] 2025-12-17 15:25:43,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 16:26:14] 2025-12-17 15:25:43,614 | INFO     | did not find any defunct processes belonging to 308104
[2025-12-17 16:26:14] 2025-12-17 15:25:43,619 | INFO     | did not find any defunct processes belonging to 308104
[2025-12-17 16:26:14] 2025-12-17 15:25:43,619 | INFO     | ready for new job
[2025-12-17 16:26:14] 2025-12-17 15:25:43,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 16:26:14] 2025-12-17 15:25:43,622 | INFO     | ***************************************
[2025-12-17 16:26:14] 2025-12-17 15:25:43,622 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 16:26:14] 2025-12-17 15:25:43,622 | INFO     | ***************************************
[2025-12-17 16:26:14] 2025-12-17 15:25:43,622 | INFO     | 
[2025-12-17 16:26:14] 2025-12-17 15:25:43,623 | INFO     | pilot is running in a VM
[2025-12-17 16:26:14] 2025-12-17 15:25:43,623 | INFO     | architecture information:
[2025-12-17 16:26:14] 2025-12-17 15:25:43,623 | INFO     | executing command: cat /etc/os-release
[2025-12-17 16:26:14] 2025-12-17 15:25:43,644 | INFO     | cat /etc/os-release:
[2025-12-17 16:26:14] NAME="CentOS Linux"
[2025-12-17 16:26:14] VERSION="7 (Core)"
[2025-12-17 16:26:14] ID="centos"
[2025-12-17 16:26:14] ID_LIKE="rhel fedora"
[2025-12-17 16:26:14] VERSION_ID="7"
[2025-12-17 16:26:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 16:26:14] ANSI_COLOR="0;31"
[2025-12-17 16:26:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 16:26:14] HOME_URL="https://www.centos.org/"
[2025-12-17 16:26:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 16:26:14] 
[2025-12-17 16:26:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 16:26:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 16:26:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 16:26:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 16:26:14] 
[2025-12-17 16:26:14] 2025-12-17 15:25:43,645 | INFO     | ***************************************
[2025-12-17 16:26:14] 2025-12-17 15:25:44,149 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2025-12-17 16:26:14] 2025-12-17 15:25:44,168 | INFO     | sufficient remaining disk space (54352936960 B)
[2025-12-17 16:26:14] 2025-12-17 15:25:44,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 16:26:14] 2025-12-17 15:25:44,169 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 16:26:14] 2025-12-17 15:25:44,169 | INFO     | update_server=False
[2025-12-17 16:26:14] 2025-12-17 15:25:44,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 16:26:14] 2025-12-17 15:25:44,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:26:14] 2025-12-17 15:25:44,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 16:26:14] 2025-12-17 15:25:44,853 | INFO     | all job control threads have been joined
[2025-12-17 16:26:14] 2025-12-17 15:25:44,896 | INFO     | all data control threads have been joined
[2025-12-17 16:26:14] 2025-12-17 15:25:45,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:26:14] 2025-12-17 15:25:45,005 | INFO     | aborting loop
[2025-12-17 16:26:14] 2025-12-17 15:25:45,110 | INFO     | all payload control threads have been joined
[2025-12-17 16:26:14] 2025-12-17 15:25:45,175 | INFO     | [job] queue monitor thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,176 | INFO     | [job] retrieve thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,461 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,504 | INFO     | [job] validate thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,504 | INFO     | [payload] validate_post thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,570 | INFO     | [data] copytool_in thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,596 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,738 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,859 | INFO     | [job] control thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,890 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:45,901 | INFO     | [data] control thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:46,010 | INFO     | [job] job monitor thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:46,019 | INFO     | [monitor] cgroup control has ended
[2025-12-17 16:26:14] 2025-12-17 15:25:46,099 | INFO     | [payload] failed_post thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:46,111 | INFO     | [payload] control thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:46,807 | INFO     | [data] copytool_out thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:47,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 16:26:14] 2025-12-17 15:25:51,580 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 16:26:14] 2025-12-17 15:25:53,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136550368364352)>', '<ExcThread(monitor, started 136549266081536)>']
[2025-12-17 16:26:14] 2025-12-17 15:25:58,019 | INFO     | all workflow threads have been joined
[2025-12-17 16:26:14] 2025-12-17 15:25:58,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 16:26:14] 2025-12-17 15:25:58,020 | INFO     | traces error code: 0
[2025-12-17 16:26:14] 2025-12-17 15:25:58,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 16:26:14] 2025-12-17 15:26:14,258 | INFO     | PID=301470 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 16:26:14] 2025-12-17 15:26:14,258 | INFO     | .. there are 3 such processes running
[2025-12-17 16:26:14] 2025-12-17 15:26:14,260 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 16:26:14] 2025-12-17 15:26:14,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 16:26:14] 2025-12-17 15:26:14,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 16:26:14] 2025-12-17 15:26:14,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 16:26:14] 2025-12-17 15:26:14,260 | INFO     | [monitor] control thread has ended
[2025-12-17 16:26:14] 2025-12-17 15:26:14,363 [wrapper] ==== pilot stdout END ====
[2025-12-17 16:26:14] 2025-12-17 15:26:14,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 16:26:14] 2025-12-17 15:26:14,375 [wrapper] pilotpid: 301470
[2025-12-17 16:26:14] 2025-12-17 15:26:14,381 [wrapper] Pilot exit status: 0
[2025-12-17 16:26:14] 2025-12-17 15:26:14,405 [wrapper] pandaids: 6932314449
[2025-12-17 16:26:14] 2025-12-17 15:26:14,483 [wrapper] cleanup supervisor_pilot  383326 301471
[2025-12-17 16:26:14] 2025-12-17 15:26:14,491 [wrapper] Test setup, not cleaning
[2025-12-17 16:26:14] 2025-12-17 15:26:14,499 [wrapper] apfmon messages muted
[2025-12-17 16:26:14] 2025-12-17 15:26:14,506 [wrapper] ==== wrapper stdout END ====
[2025-12-17 16:26:14] 2025-12-17 15:26:14,512 [wrapper] ==== wrapper stderr END ====
[2025-12-17 16:26:14]  *** Error codes and diagnostics ***
[2025-12-17 16:26:14]     "exeErrorCode": 0,
[2025-12-17 16:26:14]     "exeErrorDiag": "",
[2025-12-17 16:26:14]     "pilotErrorCode": 0,
[2025-12-17 16:26:14]     "pilotErrorDiag": "",
[2025-12-17 16:26:14]  *** Listing of results directory ***
[2025-12-17 16:26:14] insgesamt 332472
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc    579449 Dez 17 06:30 pilot3.tar.gz
[2025-12-17 16:26:14] -rwx------ 1 yeti boinc     36322 Dez 17 06:33 runpilot2-wrapper.sh
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc      5112 Dez 17 06:35 queuedata.json
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc       100 Dez 17 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 16:26:14] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 14:54 run_atlas
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc       105 Dez 17 14:54 job.xml
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc 190454575 Dez 17 14:54 EVNT.47886829._000632.pool.root.1
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc     15847 Dez 17 14:54 start_atlas.sh
[2025-12-17 16:26:14] drwxrwx--x 2 yeti boinc      4096 Dez 17 14:54 shared
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc    592418 Dez 17 14:54 input.tar.gz
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc         0 Dez 17 14:54 boinc_setup_complete
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc      6556 Dez 17 14:54 init_data.xml
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc         0 Dez 17 14:54 boinc_lockfile
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc      2539 Dez 17 14:54 pandaJob.out
[2025-12-17 16:26:14] -rw------- 1 yeti boinc        52 Dez 17 14:54 setup.sh.local
[2025-12-17 16:26:14] -rw------- 1 yeti boinc    987423 Dez 17 14:54 agis_schedconf.cvmfs.json
[2025-12-17 16:26:14] -rw------- 1 yeti boinc   1516240 Dez 17 14:54 agis_ddmendpoints.agis.ALL.json
[2025-12-17 16:26:14] drwx------ 5 yeti boinc      4096 Dez 17 14:54 pilot3
[2025-12-17 16:26:14] -rw------- 1 yeti boinc 143922302 Dez 17 16:25 HITS.47886831._017376.pool.root.1
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc       529 Dez 17 16:25 boinc_task_state.xml
[2025-12-17 16:26:14] -rw------- 1 yeti boinc      1018 Dez 17 16:25 memory_monitor_summary.json
[2025-12-17 16:26:14] -rw------- 1 yeti boinc    275236 Dez 17 16:25 log.47886831._017376.job.log.tgz.1
[2025-12-17 16:26:14] -rw------- 1 yeti boinc      7736 Dez 17 16:25 heartbeat.json
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc        27 Dez 17 16:26 wrapper_checkpoint.txt
[2025-12-17 16:26:14] -rw------- 1 yeti boinc        95 Dez 17 16:26 pilot_heartbeat.json
[2025-12-17 16:26:14] -rw------- 1 yeti boinc       821 Dez 17 16:26 pilotlog.txt
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc      8192 Dez 17 16:26 boinc_mmap_file
[2025-12-17 16:26:14] -rw------- 1 yeti boinc    805052 Dez 17 16:26 log.47886831._017376.job.log.1
[2025-12-17 16:26:14] -rw------- 1 yeti boinc       357 Dez 17 16:26 output.list
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc       620 Dez 17 16:26 runtime_log
[2025-12-17 16:26:14] -rw------- 1 yeti boinc   1095680 Dez 17 16:26 result.tar.gz
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc      9537 Dez 17 16:26 runtime_log.err
[2025-12-17 16:26:14] -rw------- 1 yeti boinc       635 Dez 17 16:26 6ibNDmNLzp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHYbKDmT6bFln.diag
[2025-12-17 16:26:14] -rw-r--r-- 1 yeti boinc     22112 Dez 17 16:26 stderr.txt
[2025-12-17 16:26:14] HITS file was successfully produced:
[2025-12-17 16:26:14] -rw------- 1 yeti boinc 143922302 Dez 17 16:25 shared/HITS.pool.root.1
[2025-12-17 16:26:14]  *** Contents of shared directory: ***
[2025-12-17 16:26:14] insgesamt 328220
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc 190454575 Dez 17 14:54 ATLAS.root_0
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc     15847 Dez 17 14:54 start_atlas.sh
[2025-12-17 16:26:14] -rw-r--r-- 2 yeti boinc    592418 Dez 17 14:54 input.tar.gz
[2025-12-17 16:26:14] -rw------- 1 yeti boinc 143922302 Dez 17 16:25 HITS.pool.root.1
[2025-12-17 16:26:14] -rw------- 1 yeti boinc   1095680 Dez 17 16:26 result.tar.gz
16:26:16 (297621): run_atlas exited; CPU time 20783.657142
16:26:16 (297621): called boinc_finish(0)

</stderr_txt>
]]>

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