Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:07:07 (1658662): wrapper (7.7.26015): starting
21:07:07 (1658662): wrapper: running run_atlas (--nthreads 2)
[2025-12-17 21:07:07] Arguments: --nthreads 2
[2025-12-17 21:07:07] Threads: 2
[2025-12-17 21:07:07] Checking for CVMFS
[2025-12-17 21:07:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 21:07:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 21:07:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 21:07:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 21:07:08] 2.9.2.0 357904 6656 63188 154121 1 57 28053257 36864000 0 130560 0 3428606 99.987 239120 15995 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 21:07:08] CVMFS is ok
[2025-12-17 21:07:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 21:07:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 21:07:08] Further information can be found at the LHC@home message board.
[2025-12-17 21:07:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 21:07:08] Checking for apptainer binary...
[2025-12-17 21:07:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 21:07:08] Running /usr/bin/apptainer --version
[2025-12-17 21:07:08] apptainer version 1.4.1-1.1
[2025-12-17 21:07:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 21:07:08] atlasA229
[2025-12-17 21:07:08] apptainer works
[2025-12-17 21:07:08] Set ATHENA_PROC_NUMBER=2
[2025-12-17 21:07:08] Set ATHENA_CORE_NUMBER=2
[2025-12-17 21:07:08] Starting ATLAS job with PandaID=6932314718
[2025-12-17 21:07:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 23:15:45]  *** The last 200 lines of the pilot log: ***
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | job 6932314718 has completed (purged errors)
[2025-12-17 23:15:45] 2025-12-17 22:15:13,132 | INFO     | overall cleanup function is called
[2025-12-17 23:15:45] 2025-12-17 22:15:14,138 | INFO     | --- collectZombieJob: --- 10, [1668792]
[2025-12-17 23:15:45] 2025-12-17 22:15:14,139 | INFO     | zombie collector waiting for pid 1668792
[2025-12-17 23:15:45] 2025-12-17 22:15:14,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 23:15:45] 2025-12-17 22:15:14,139 | INFO     | collected zombie processes
[2025-12-17 23:15:45] 2025-12-17 22:15:14,140 | INFO     | will attempt to kill all subprocesses of pid=1668792
[2025-12-17 23:15:45] 2025-12-17 22:15:14,175 | INFO     | process IDs to be killed: [1668792] (in reverse order)
[2025-12-17 23:15:45] 2025-12-17 22:15:14,196 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 23:15:45] 2025-12-17 22:15:14,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 23:15:45] 2025-12-17 22:15:14,197 | INFO     | did not find any defunct processes belonging to 1668792
[2025-12-17 23:15:45] 2025-12-17 22:15:14,198 | INFO     | did not find any defunct processes belonging to 1668792
[2025-12-17 23:15:45] 2025-12-17 22:15:14,198 | INFO     | ready for new job
[2025-12-17 23:15:45] 2025-12-17 22:15:14,198 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 23:15:45] 2025-12-17 22:15:14,198 | INFO     | ***************************************
[2025-12-17 23:15:45] 2025-12-17 22:15:14,199 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 23:15:45] 2025-12-17 22:15:14,199 | INFO     | ***************************************
[2025-12-17 23:15:45] 2025-12-17 22:15:14,199 | INFO     | 
[2025-12-17 23:15:45] 2025-12-17 22:15:14,199 | INFO     | architecture information:
[2025-12-17 23:15:45] 2025-12-17 22:15:14,199 | INFO     | executing command: cat /etc/os-release
[2025-12-17 23:15:45] 2025-12-17 22:15:14,208 | INFO     | cat /etc/os-release:
[2025-12-17 23:15:45] NAME="CentOS Linux"
[2025-12-17 23:15:45] VERSION="7 (Core)"
[2025-12-17 23:15:45] ID="centos"
[2025-12-17 23:15:45] ID_LIKE="rhel fedora"
[2025-12-17 23:15:45] VERSION_ID="7"
[2025-12-17 23:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 23:15:45] ANSI_COLOR="0;31"
[2025-12-17 23:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 23:15:45] HOME_URL="https://www.centos.org/"
[2025-12-17 23:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 23:15:45] 
[2025-12-17 23:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 23:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 23:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 23:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 23:15:45] 
[2025-12-17 23:15:45] 2025-12-17 22:15:14,209 | INFO     | ***************************************
[2025-12-17 23:15:45] 2025-12-17 22:15:14,712 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | INFO     | sufficient remaining disk space (332857868288 B)
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | INFO     | update_server=False
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 23:15:45] 2025-12-17 22:15:14,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 23:15:45] 2025-12-17 22:15:14,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 23:15:45] 2025-12-17 22:15:14,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 23:15:45] 2025-12-17 22:15:15,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 23:15:45] 2025-12-17 22:15:15,102 | INFO     | aborting loop
[2025-12-17 23:15:45] 2025-12-17 22:15:15,220 | INFO     | all data control threads have been joined
[2025-12-17 23:15:45] 2025-12-17 22:15:15,472 | INFO     | all payload control threads have been joined
[2025-12-17 23:15:45] 2025-12-17 22:15:15,730 | INFO     | [job] retrieve thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:15,731 | INFO     | [job] queue monitor thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,108 | INFO     | [job] job monitor thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,174 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,226 | INFO     | [data] control thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,311 | INFO     | all job control threads have been joined
[2025-12-17 23:15:45] 2025-12-17 22:15:16,365 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,414 | INFO     | [job] validate thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,417 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,435 | INFO     | [payload] failed_post thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,478 | INFO     | [payload] control thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:16,730 | INFO     | [data] copytool_out thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:17,014 | INFO     | [payload] validate_post thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:17,155 | INFO     | [data] copytool_in thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:17,316 | INFO     | [job] control thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:18,732 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:24,894 | INFO     | job.realtimelogging is not enabled
[2025-12-17 23:15:45] 2025-12-17 22:15:25,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 23:15:45] 2025-12-17 22:15:32,461 | INFO     | [monitor] cgroup control has ended
[2025-12-17 23:15:45] 2025-12-17 22:15:34,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611343419200)>', '<ExcThread(monitor, started 140610686138112)>']
[2025-12-17 23:15:45] 2025-12-17 22:15:39,254 | INFO     | all workflow threads have been joined
[2025-12-17 23:15:45] 2025-12-17 22:15:39,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 23:15:45] 2025-12-17 22:15:39,255 | INFO     | traces error code: 0
[2025-12-17 23:15:45] 2025-12-17 22:15:39,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | INFO     | PID=1662370 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 23:15:45] 2025-12-17 22:15:44,945 | INFO     | [monitor] control thread has ended
[2025-12-17 23:15:45] 2025-12-17 22:15:44,986 [wrapper] ==== pilot stdout END ====
[2025-12-17 23:15:45] 2025-12-17 22:15:44,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 23:15:45] 2025-12-17 22:15:44,991 [wrapper] pilotpid: 1662370
[2025-12-17 23:15:45] 2025-12-17 22:15:44,994 [wrapper] Pilot exit status: 0
[2025-12-17 23:15:45] 2025-12-17 22:15:45,000 [wrapper] pandaids: 6932314718
[2025-12-17 23:15:45] 2025-12-17 22:15:45,014 [wrapper] cleanup supervisor_pilot 1682775 1662371
[2025-12-17 23:15:45] 2025-12-17 22:15:45,016 [wrapper] Test setup, not cleaning
[2025-12-17 23:15:45] 2025-12-17 22:15:45,018 [wrapper] apfmon messages muted
[2025-12-17 23:15:45] 2025-12-17 22:15:45,020 [wrapper] ==== wrapper stdout END ====
[2025-12-17 23:15:45] 2025-12-17 22:15:45,022 [wrapper] ==== wrapper stderr END ====
[2025-12-17 23:15:45]  *** Error codes and diagnostics ***
[2025-12-17 23:15:45]     "exeErrorCode": 0,
[2025-12-17 23:15:45]     "exeErrorDiag": "",
[2025-12-17 23:15:45]     "pilotErrorCode": 0,
[2025-12-17 23:15:45]     "pilotErrorDiag": "",
[2025-12-17 23:15:45]  *** Listing of results directory ***
[2025-12-17 23:15:45] total 332096
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc    579449 Dec 17 06:30 pilot3.tar.gz
[2025-12-17 23:15:45] -rwx------ 1 boinc boinc     36322 Dec 17 06:33 runpilot2-wrapper.sh
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc      5112 Dec 17 06:35 queuedata.json
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc       100 Dec 17 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 23:15:45] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 21:07 run_atlas
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc       105 Dec 17 21:07 job.xml
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc 190890182 Dec 17 21:07 EVNT.47886829._000638.pool.root.1
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc    592422 Dec 17 21:07 input.tar.gz
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc     15847 Dec 17 21:07 start_atlas.sh
[2025-12-17 23:15:45] drwxrwx--x 2 boinc boinc      4096 Dec 17 21:07 shared
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc         0 Dec 17 21:07 boinc_setup_complete
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc      6207 Dec 17 21:07 init_data.xml
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc         0 Dec 17 21:07 boinc_lockfile
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc      2539 Dec 17 21:07 pandaJob.out
[2025-12-17 23:15:45] -rw------- 1 boinc boinc    988136 Dec 17 21:07 agis_schedconf.cvmfs.json
[2025-12-17 23:15:45] -rw------- 1 boinc boinc   1516240 Dec 17 21:07 agis_ddmendpoints.agis.ALL.json
[2025-12-17 23:15:45] drwx------ 5 boinc boinc      4096 Dec 17 21:07 pilot3
[2025-12-17 23:15:45] -rw------- 1 boinc boinc 142532175 Dec 17 23:14 HITS.47886831._017521.pool.root.1
[2025-12-17 23:15:45] -rw------- 1 boinc boinc        95 Dec 17 23:14 pilot_heartbeat.json
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc       529 Dec 17 23:14 boinc_task_state.xml
[2025-12-17 23:15:45] -rw------- 1 boinc boinc      1013 Dec 17 23:15 memory_monitor_summary.json
[2025-12-17 23:15:45] -rw------- 1 boinc boinc    272669 Dec 17 23:15 log.47886831._017521.job.log.tgz.1
[2025-12-17 23:15:45] -rw------- 1 boinc boinc      7750 Dec 17 23:15 heartbeat.json
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc      8192 Dec 17 23:15 boinc_mmap_file
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc        27 Dec 17 23:15 wrapper_checkpoint.txt
[2025-12-17 23:15:45] -rw------- 1 boinc boinc       747 Dec 17 23:15 pilotlog.txt
[2025-12-17 23:15:45] -rw------- 1 boinc boinc   1105147 Dec 17 23:15 log.47886831._017521.job.log.1
[2025-12-17 23:15:45] -rw------- 1 boinc boinc       357 Dec 17 23:15 output.list
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc       620 Dec 17 23:15 runtime_log
[2025-12-17 23:15:45] -rw------- 1 boinc boinc   1392640 Dec 17 23:15 result.tar.gz
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc      8912 Dec 17 23:15 runtime_log.err
[2025-12-17 23:15:45] -rw------- 1 boinc boinc       662 Dec 17 23:15 8kNODmNLzp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG5WKDmVqmMlm.diag
[2025-12-17 23:15:45] -rw-r--r-- 1 boinc boinc     11618 Dec 17 23:15 stderr.txt
[2025-12-17 23:15:45] HITS file was successfully produced:
[2025-12-17 23:15:45] -rw------- 1 boinc boinc 142532175 Dec 17 23:14 shared/HITS.pool.root.1
[2025-12-17 23:15:45]  *** Contents of shared directory: ***
[2025-12-17 23:15:45] total 327572
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc 190890182 Dec 17 21:07 ATLAS.root_0
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc    592422 Dec 17 21:07 input.tar.gz
[2025-12-17 23:15:45] -rw-r--r-- 2 boinc boinc     15847 Dec 17 21:07 start_atlas.sh
[2025-12-17 23:15:45] -rw------- 1 boinc boinc 142532175 Dec 17 23:14 HITS.pool.root.1
[2025-12-17 23:15:45] -rw------- 1 boinc boinc   1392640 Dec 17 23:15 result.tar.gz
23:15:46 (1658662): run_atlas exited; CPU time 14971.653286
23:15:46 (1658662): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN