Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:31:40 (3571877): wrapper (7.7.26015): starting
12:31:40 (3571877): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 12:31:40] Arguments: --nthreads 12
[2025-12-17 12:31:40] Threads: 12
[2025-12-17 12:31:40] Checking for CVMFS
[2025-12-17 12:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 12:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 12:31:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 12:31:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 12:31:41] 2.11.0.0 1971323 3379 100580 154111 3 188 3744073 6144000 11990 130560 0 43063527 99.999 128507 182 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-17 12:31:41] CVMFS is ok
[2025-12-17 12:31:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 12:31:41] Checking for apptainer binary...
[2025-12-17 12:31:41] apptainer is not installed, using version from CVMFS
[2025-12-17 12:31:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 12:31:41] radiat0r
[2025-12-17 12:31:41] apptainer works
[2025-12-17 12:31:41] Set ATHENA_PROC_NUMBER=12
[2025-12-17 12:31:41] Set ATHENA_CORE_NUMBER=12
[2025-12-17 12:31:41] Starting ATLAS job with PandaID=6931734648
[2025-12-17 12:31:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 13:47:07]  *** The last 200 lines of the pilot log: ***
[2025-12-17 13:47:07] 2025-12-17 13:45:53,014 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 13:47:07] 2025-12-17 13:45:53,014 | INFO     | summary of transferred files:
[2025-12-17 13:47:07] 2025-12-17 13:45:53,015 | INFO     |  -- lfn=log.47898763._020682.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 13:47:07] 2025-12-17 13:45:53,015 | INFO     | stage-out finished correctly
[2025-12-17 13:47:07] 2025-12-17 13:45:53,108 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 13:47:07] 2025-12-17 13:45:53,328 | INFO     | number of running child processes to parent process 3584761: 1
[2025-12-17 13:47:07] 2025-12-17 13:45:53,328 | INFO     | maximum number of monitored processes: 6
[2025-12-17 13:47:07] 2025-12-17 13:45:53,696 | INFO     | PID=3576606 has CPU usage=29.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 13:47:07] 2025-12-17 13:45:53,697 | INFO     | .. there are 14 such processes running
[2025-12-17 13:47:07] 2025-12-17 13:45:54,697 | INFO     | time since job start (4439s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:45:55,832 | INFO     | monitor loop #307: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:45:55,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:45:55,964 | INFO     | job 6931734648 has state=finished
[2025-12-17 13:47:07] 2025-12-17 13:45:55,964 | INFO     | preparing for final server update for job 6931734648 in state='finished'
[2025-12-17 13:47:07] 2025-12-17 13:45:55,965 | INFO     | this job has now completed (state=finished)
[2025-12-17 13:47:07] 2025-12-17 13:45:55,965 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 13:47:07] 2025-12-17 13:45:55,965 | INFO     | log transfer has been attempted: DONE
[2025-12-17 13:47:07] 2025-12-17 13:45:55,965 | INFO     | job 6931734648 has finished - writing final server update
[2025-12-17 13:47:07] 2025-12-17 13:45:55,966 | INFO     | total number of processed events: 400 (read)
[2025-12-17 13:47:07] 2025-12-17 13:45:55,967 | INFO     | executing command: lscpu
[2025-12-17 13:47:07] 2025-12-17 13:45:56,161 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 13:47:07] 2025-12-17 13:45:56,703 | INFO     | time since job start (4441s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:45:58,335 | INFO     | monitor loop #308: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:45:58,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:45:58,707 | INFO     | time since job start (4443s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:46:00,711 | INFO     | time since job start (4445s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:46:00,841 | INFO     | monitor loop #309: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:46:00,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:46:02,715 | INFO     | time since job start (4447s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:46:03,344 | INFO     | monitor loop #310: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:46:03,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:46:04,721 | INFO     | time since job start (4449s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:46:05,848 | INFO     | monitor loop #311: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:46:05,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:46:06,723 | INFO     | time since job start (4451s) is within the limit (174528.0s)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,235 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 13:47:07] 2025-12-17 13:46:08,297 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2459.797421875
[2025-12-17 13:47:07] 2025-12-17 13:46:08,351 | INFO     | monitor loop #312: job 0:6931734648 is in state 'finished'
[2025-12-17 13:47:07] 2025-12-17 13:46:08,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,367 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6931734648/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,368 | INFO     | extracted standard info from prmon json
[2025-12-17 13:47:07] 2025-12-17 13:46:08,368 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 13:47:07] 2025-12-17 13:46:08,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 13:47:07] 2025-12-17 13:46:08,368 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 13:47:07] 2025-12-17 13:46:08,368 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 13:47:07] 2025-12-17 13:46:08,369 | INFO     | fitting pss+swap vs Time
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | sum of square deviations: 89127252.5
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | sum of deviations: 2224921472.5
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | mean x: 1765977035.5
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | mean y: 2653324.3484848486
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | intersect: -44082181740.27829
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | chi2: 0.03614633414462227
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | current memory leak: 24.96 B/s (using 66 data points, chi2=0.04)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,370 | INFO     | could have reported an average CPU frequency of 2426 MHz (6 samples)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | ..............................
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . Timing measurements:
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . get job = 0 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . initial setup = 1 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . payload setup = 7 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . stage-in = 0 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . payload execution = 4405 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . stage-out = 1 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | . log creation = 0 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,371 | INFO     | ..............................
[2025-12-17 13:47:07] 2025-12-17 13:46:08,439 | INFO     | 
[2025-12-17 13:47:07] 2025-12-17 13:46:08,439 | INFO     | job summary report
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | --------------------------------------------------
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | PanDA job id: 6931734648
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | task id: 47898763
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | errors: (none)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | pilot state: finished 
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | transexitcode: 0
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | exeerrorcode: 0
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | exeerrordiag: 
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | exitcode: 0
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | exitmsg: OK
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | cpuconsumptiontime: 47428 s
[2025-12-17 13:47:07] 2025-12-17 13:46:08,440 | INFO     | nevents: 400
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | neventsw: 0
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | pid: 3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | pgrp: 3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | corecount: 12
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | event service: False
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | sizes: {0: 2283958, 1: 2283958, 7: 2284248, 11: 2284276, 4417: 2310469, 4418: 2310468, 4419: 2319650, 4420: 2319706, 4435: 2319900}
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | --------------------------------------------------
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | 
[2025-12-17 13:47:07] 2025-12-17 13:46:08,441 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-17 13:47:07] 2025-12-17 13:46:08,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | job 6931734648 has completed (purged errors)
[2025-12-17 13:47:07] 2025-12-17 13:46:08,470 | INFO     | overall cleanup function is called
[2025-12-17 13:47:07] 2025-12-17 13:46:09,479 | INFO     | --- collectZombieJob: --- 10, [3584761]
[2025-12-17 13:47:07] 2025-12-17 13:46:09,479 | INFO     | zombie collector waiting for pid 3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:09,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 13:47:07] 2025-12-17 13:46:09,479 | INFO     | collected zombie processes
[2025-12-17 13:47:07] 2025-12-17 13:46:09,479 | INFO     | will attempt to kill all subprocesses of pid=3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:10,310 | INFO     | process IDs to be killed: [3584761] (in reverse order)
[2025-12-17 13:47:07] 2025-12-17 13:46:10,579 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 13:47:07] 2025-12-17 13:46:10,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 13:47:07] 2025-12-17 13:46:10,608 | INFO     | did not find any defunct processes belonging to 3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:10,635 | INFO     | did not find any defunct processes belonging to 3584761
[2025-12-17 13:47:07] 2025-12-17 13:46:10,636 | INFO     | ready for new job
[2025-12-17 13:47:07] 2025-12-17 13:46:10,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 13:47:07] 2025-12-17 13:46:10,638 | INFO     | ***************************************
[2025-12-17 13:47:07] 2025-12-17 13:46:10,639 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 13:47:07] 2025-12-17 13:46:10,639 | INFO     | ***************************************
[2025-12-17 13:47:07] 2025-12-17 13:46:10,639 | INFO     | 
[2025-12-17 13:47:07] 2025-12-17 13:46:10,681 | INFO     | architecture information:
[2025-12-17 13:47:07] 2025-12-17 13:46:10,682 | INFO     | executing command: cat /etc/os-release
[2025-12-17 13:47:07] 2025-12-17 13:46:10,707 | INFO     | cat /etc/os-release:
[2025-12-17 13:47:07] NAME="CentOS Linux"
[2025-12-17 13:47:07] VERSION="7 (Core)"
[2025-12-17 13:47:07] ID="centos"
[2025-12-17 13:47:07] ID_LIKE="rhel fedora"
[2025-12-17 13:47:07] VERSION_ID="7"
[2025-12-17 13:47:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 13:47:07] ANSI_COLOR="0;31"
[2025-12-17 13:47:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 13:47:07] HOME_URL="https://www.centos.org/"
[2025-12-17 13:47:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 13:47:07] 
[2025-12-17 13:47:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 13:47:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 13:47:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 13:47:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 13:47:07] 
[2025-12-17 13:47:07] 2025-12-17 13:46:10,708 | INFO     | ***************************************
[2025-12-17 13:47:07] 2025-12-17 13:46:11,211 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-17 13:47:07] 2025-12-17 13:46:11,238 | INFO     | sufficient remaining disk space (1702582288384 B)
[2025-12-17 13:47:07] 2025-12-17 13:46:11,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 13:47:07] 2025-12-17 13:46:11,238 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 13:47:07] 2025-12-17 13:46:11,238 | INFO     | update_server=False
[2025-12-17 13:47:07] 2025-12-17 13:46:11,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 13:47:07] 2025-12-17 13:46:11,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 13:47:07] 2025-12-17 13:46:11,663 | INFO     | all data control threads have been joined
[2025-12-17 13:47:07] 2025-12-17 13:46:11,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:47:07] 2025-12-17 13:46:11,861 | INFO     | aborting loop
[2025-12-17 13:47:07] 2025-12-17 13:46:12,244 | INFO     | [job] retrieve thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:12,364 | INFO     | [payload] failed_post thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:12,467 | INFO     | all payload control threads have been joined
[2025-12-17 13:47:07] 2025-12-17 13:46:12,570 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:12,659 | INFO     | all job control threads have been joined
[2025-12-17 13:47:07] 2025-12-17 13:46:12,667 | INFO     | [data] control thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:12,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 13:47:07] 2025-12-17 13:46:12,747 | INFO     | [data] copytool_in thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:12,863 | INFO     | [job] job monitor thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,072 | INFO     | [payload] validate_post thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,245 | INFO     | [data] copytool_out thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,264 | INFO     | [job] validate thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:47:07] 2025-12-17 13:46:13,473 | INFO     | [payload] control thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,599 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,664 | INFO     | [job] control thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:13,735 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:14,451 | INFO     | [job] queue monitor thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:16,731 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 13:47:07] 2025-12-17 13:46:40,820 | INFO     | PID=3576606 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 13:47:07] 2025-12-17 13:46:40,820 | INFO     | .. there are 14 such processes running
[2025-12-17 13:47:07] 2025-12-17 13:46:40,822 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 13:47:07] 2025-12-17 13:46:40,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 13:47:07] 2025-12-17 13:46:40,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 13:47:07] 2025-12-17 13:46:52,855 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-12-17 13:47:07] 2025-12-17 13:47:01,615 | INFO     | [monitor] cgroup control has ended
[2025-12-17 13:47:07] 2025-12-17 13:47:02,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403771410240)>', '<ExcThread(monitor, started 140403311355648)>']
[2025-12-17 13:47:07] 2025-12-17 13:47:02,934 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 13:47:07] 2025-12-17 13:47:02,934 | INFO     | [monitor] control thread has ended
[2025-12-17 13:47:07] 2025-12-17 13:47:07,423 | INFO     | all workflow threads have been joined
[2025-12-17 13:47:07] 2025-12-17 13:47:07,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 13:47:07] 2025-12-17 13:47:07,424 | INFO     | traces error code: 0
[2025-12-17 13:47:07] 2025-12-17 13:47:07,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 13:47:07] 2025-12-17 13:47:07,583 [wrapper] ==== pilot stdout END ====
[2025-12-17 13:47:07] 2025-12-17 13:47:07,586 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 13:47:07] 2025-12-17 13:47:07,590 [wrapper] pilotpid: 3576606
[2025-12-17 13:47:07] 2025-12-17 13:47:07,593 [wrapper] Pilot exit status: 0
[2025-12-17 13:47:07] 2025-12-17 13:47:07,606 [wrapper] pandaids: 6931734648
[2025-12-17 13:47:07] 2025-12-17 13:47:07,777 [wrapper] cleanup supervisor_pilot 4007503 3576607
[2025-12-17 13:47:07] 2025-12-17 13:47:07,781 [wrapper] Test setup, not cleaning
[2025-12-17 13:47:07] 2025-12-17 13:47:07,785 [wrapper] apfmon messages muted
[2025-12-17 13:47:07] 2025-12-17 13:47:07,788 [wrapper] ==== wrapper stdout END ====
[2025-12-17 13:47:07] 2025-12-17 13:47:07,790 [wrapper] ==== wrapper stderr END ====
[2025-12-17 13:47:07]  *** Error codes and diagnostics ***
[2025-12-17 13:47:07]     "exeErrorCode": 0,
[2025-12-17 13:47:07]     "exeErrorDiag": "",
[2025-12-17 13:47:07]     "pilotErrorCode": 0,
[2025-12-17 13:47:07]     "pilotErrorDiag": "",
[2025-12-17 13:47:07]  *** Listing of results directory ***
[2025-12-17 13:47:07] total 447828
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc    579449 Dec 17 01:05 pilot3.tar.gz
[2025-12-17 13:47:07] -rwx------ 1 boinc boinc     36322 Dec 17 01:06 runpilot2-wrapper.sh
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc      5112 Dec 17 01:08 queuedata.json
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc       100 Dec 17 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 13:47:07] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 12:31 run_atlas
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc       105 Dec 17 12:31 job.xml
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc     15847 Dec 17 12:31 start_atlas.sh
[2025-12-17 13:47:07] drwxrwx--x 2 boinc boinc      4096 Dec 17 12:31 shared
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc    592394 Dec 17 12:31 input.tar.gz
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc      9416 Dec 17 12:31 init_data.xml
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc 227567159 Dec 17 12:31 EVNT.47898761._000802.pool.root.1
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc         0 Dec 17 12:31 boinc_setup_complete
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc         0 Dec 17 12:31 boinc_lockfile
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc      2508 Dec 17 12:31 pandaJob.out
[2025-12-17 13:47:07] -rw------- 1 boinc boinc    987423 Dec 17 12:31 agis_schedconf.cvmfs.json
[2025-12-17 13:47:07] -rw------- 1 boinc boinc   1516240 Dec 17 12:31 agis_ddmendpoints.agis.ALL.json
[2025-12-17 13:47:07] drwx------ 5 boinc boinc      4096 Dec 17 12:31 pilot3
[2025-12-17 13:47:07] -rw------- 1 boinc boinc 225015609 Dec 17 13:45 HITS.47898763._020682.pool.root.1
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc       529 Dec 17 13:45 boinc_task_state.xml
[2025-12-17 13:47:07] -rw------- 1 boinc boinc      1029 Dec 17 13:45 memory_monitor_summary.json
[2025-12-17 13:47:07] -rw------- 1 boinc boinc    393769 Dec 17 13:45 log.47898763._020682.job.log.tgz.1
[2025-12-17 13:47:07] -rw------- 1 boinc boinc      7742 Dec 17 13:46 heartbeat.json
[2025-12-17 13:47:07] -rw------- 1 boinc boinc        95 Dec 17 13:46 pilot_heartbeat.json
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc        27 Dec 17 13:47 wrapper_checkpoint.txt
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc      8192 Dec 17 13:47 boinc_mmap_file
[2025-12-17 13:47:07] -rw------- 1 boinc boinc      4826 Dec 17 13:47 pilotlog.txt
[2025-12-17 13:47:07] -rw------- 1 boinc boinc    640984 Dec 17 13:47 log.47898763._020682.job.log.1
[2025-12-17 13:47:07] -rw------- 1 boinc boinc       357 Dec 17 13:47 output.list
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc       620 Dec 17 13:47 runtime_log
[2025-12-17 13:47:07] -rw------- 1 boinc boinc   1054720 Dec 17 13:47 result.tar.gz
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc      8772 Dec 17 13:47 runtime_log.err
[2025-12-17 13:47:07] -rw------- 1 boinc boinc       643 Dec 17 13:47 lfpKDmRBvp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj5aKDmnbhrim.diag
[2025-12-17 13:47:07] -rw-r--r-- 1 boinc boinc     22007 Dec 17 13:47 stderr.txt
[2025-12-17 13:47:07] HITS file was successfully produced:
[2025-12-17 13:47:07] -rw------- 1 boinc boinc 225015609 Dec 17 13:45 shared/HITS.pool.root.1
[2025-12-17 13:47:07]  *** Contents of shared directory: ***
[2025-12-17 13:47:07] total 443616
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc     15847 Dec 17 12:31 start_atlas.sh
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc    592394 Dec 17 12:31 input.tar.gz
[2025-12-17 13:47:07] -rw-r--r-- 2 boinc boinc 227567159 Dec 17 12:31 ATLAS.root_0
[2025-12-17 13:47:07] -rw------- 1 boinc boinc 225015609 Dec 17 13:45 HITS.pool.root.1
[2025-12-17 13:47:07] -rw------- 1 boinc boinc   1054720 Dec 17 13:47 result.tar.gz
13:47:09 (3571877): run_atlas exited; CPU time 47706.143720
13:47:09 (3571877): called boinc_finish(0)

</stderr_txt>
]]>

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