Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:40:53 (24329): wrapper (7.7.26015): starting
05:40:53 (24329): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 05:40:53] Arguments: --nthreads 12
[2025-12-17 05:40:53] Threads: 12
[2025-12-17 05:40:53] Checking for CVMFS
[2025-12-17 05:40:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 05:40:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 05:40:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 05:40:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 05:40:54] 2.11.2.0 25590 218495 93784 154109 0 57 15452736 20275200 1 130560 2 112233311 99.963 9162073 27870 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 05:40:54] CVMFS is ok
[2025-12-17 05:40:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 05:40:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 05:40:54] Further information can be found at the LHC@home message board.
[2025-12-17 05:40:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 05:40:54] Checking for apptainer binary...
[2025-12-17 05:40:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 05:40:54] Running /usr/bin/apptainer --version
[2025-12-17 05:40:54] apptainer version 1.3.2-1.el7
[2025-12-17 05:40:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 05:40:55] c-205-24.aglt2.org
[2025-12-17 05:40:55] apptainer works
[2025-12-17 05:40:55] Set ATHENA_PROC_NUMBER=12
[2025-12-17 05:40:55] Set ATHENA_CORE_NUMBER=12
[2025-12-17 05:40:55] Starting ATLAS job with PandaID=6929222508
[2025-12-17 05:40:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 07:00:25]  *** The last 200 lines of the pilot log: ***
[2025-12-17 07:00:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 07:00:25]  replicas=None
[2025-12-17 07:00:25]  scope=mc23_13p6TeV
[2025-12-17 07:00:25]  status=None
[2025-12-17 07:00:25]  status_code=0
[2025-12-17 07:00:25]  storage_token=
[2025-12-17 07:00:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929222508/log.47886831._004475.job.log.tgz.1
[2025-12-17 07:00:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/7c/log.47886831._004475.job.log.tgz.1
[2025-12-17 07:00:25]  workdir=None
[2025-12-17 07:00:25] ]
[2025-12-17 07:00:25] 2025-12-17 11:59:40,735 | INFO     | transferring file log.47886831._004475.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929222508/log.47886831._004475.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-17 07:00:25] 2025-12-17 11:59:40,735 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929222508/log.47886831._004475.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._004475.job
[2025-12-17 07:00:25] 2025-12-17 11:59:40,757 | INFO     | adding to output.list: log.47886831._004475.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/7c/log.47886831._004475.job.log.tg
[2025-12-17 07:00:25] 2025-12-17 11:59:40,758 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 07:00:25] 2025-12-17 11:59:40,758 | INFO     | summary of transferred files:
[2025-12-17 07:00:25] 2025-12-17 11:59:40,759 | INFO     |  -- lfn=log.47886831._004475.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 07:00:25] 2025-12-17 11:59:40,759 | INFO     | stage-out finished correctly
[2025-12-17 07:00:25] 2025-12-17 11:59:41,024 | WARNING  | process 2101 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 07:00:25] 2025-12-17 11:59:41,024 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222508/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 07:00:25] 2025-12-17 11:59:41,076 | INFO     | time since job start (4710s) is within the limit (174528.0s)
[2025-12-17 07:00:25] 2025-12-17 11:59:41,106 | INFO     | number of running child processes to parent process 2101: 1
[2025-12-17 07:00:25] 2025-12-17 11:59:41,107 | INFO     | maximum number of monitored processes: 6
[2025-12-17 07:00:25] 2025-12-17 11:59:41,691 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 07:00:25] 2025-12-17 11:59:42,304 | INFO     | job 6929222508 has state=finished
[2025-12-17 07:00:25] 2025-12-17 11:59:42,304 | INFO     | preparing for final server update for job 6929222508 in state='finished'
[2025-12-17 07:00:25] 2025-12-17 11:59:42,305 | INFO     | this job has now completed (state=finished)
[2025-12-17 07:00:25] 2025-12-17 11:59:42,305 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 07:00:25] 2025-12-17 11:59:42,305 | INFO     | log transfer has been attempted: DONE
[2025-12-17 07:00:25] 2025-12-17 11:59:42,305 | INFO     | job 6929222508 has finished - writing final server update
[2025-12-17 07:00:25] 2025-12-17 11:59:42,306 | INFO     | total number of processed events: 400 (read)
[2025-12-17 07:00:25] 2025-12-17 11:59:42,306 | INFO     | executing command: lscpu
[2025-12-17 07:00:25] 2025-12-17 11:59:42,333 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 07:00:25] 2025-12-17 11:59:43,081 | INFO     | time since job start (4712s) is within the limit (174528.0s)
[2025-12-17 07:00:25] 2025-12-17 11:59:43,610 | INFO     | monitor loop #350: job 0:6929222508 is in state 'finished'
[2025-12-17 07:00:25] 2025-12-17 11:59:43,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 07:00:25] 2025-12-17 11:59:45,087 | INFO     | time since job start (4714s) is within the limit (174528.0s)
[2025-12-17 07:00:25] 2025-12-17 11:59:46,113 | INFO     | monitor loop #351: job 0:6929222508 is in state 'finished'
[2025-12-17 07:00:25] 2025-12-17 11:59:46,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 07:00:25] 2025-12-17 11:59:47,092 | INFO     | time since job start (4716s) is within the limit (174528.0s)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,135 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-17 07:00:25] 2025-12-17 11:59:48,138 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-17 07:00:25] 2025-12-17 11:59:48,140 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222508/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,141 | INFO     | extracted standard info from prmon json
[2025-12-17 07:00:25] 2025-12-17 11:59:48,141 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 07:00:25] 2025-12-17 11:59:48,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 07:00:25] 2025-12-17 11:59:48,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 07:00:25] 2025-12-17 11:59:48,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 07:00:25] 2025-12-17 11:59:48,143 | INFO     | fitting pss+swap vs Time
[2025-12-17 07:00:25] 2025-12-17 11:59:48,144 | INFO     | sum of square deviations: 106336877.5
[2025-12-17 07:00:25] 2025-12-17 11:59:48,144 | INFO     | sum of deviations: -8123118130.999998
[2025-12-17 07:00:25] 2025-12-17 11:59:48,144 | INFO     | mean x: 1765970509.5
[2025-12-17 07:00:25] 2025-12-17 11:59:48,144 | INFO     | mean y: 2769578.742857143
[2025-12-17 07:00:25] 2025-12-17 11:59:48,144 | INFO     | intersect: 134905988497.60526
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | chi2: 0.08434949800943325
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | current memory leak: -76.39 B/s (using 70 data points, chi2=0.08)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | ..............................
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | . Timing measurements:
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | . get job = 0 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,145 | INFO     | . initial setup = 2 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | . payload setup = 7 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | . stage-in = 0 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | . payload execution = 4682 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | . stage-out = 0 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | . log creation = 0 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,146 | INFO     | ..............................
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | 
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | job summary report
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | --------------------------------------------------
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | PanDA job id: 6929222508
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | task id: 47886831
[2025-12-17 07:00:25] 2025-12-17 11:59:48,396 | INFO     | errors: (none)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | pilot state: finished 
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | transexitcode: 0
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | exeerrorcode: 0
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | exeerrordiag: 
[2025-12-17 07:00:25] 2025-12-17 11:59:48,397 | INFO     | exitcode: 0
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | exitmsg: OK
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | cpuconsumptiontime: 50533 s
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | nevents: 400
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | neventsw: 0
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | pid: 2101
[2025-12-17 07:00:25] 2025-12-17 11:59:48,398 | INFO     | pgrp: 2101
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | corecount: 12
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | event service: False
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | sizes: {0: 2283989, 5: 2284251, 11: 2284307, 4692: 2310457, 4693: 2319455, 4694: 2319511, 4700: 2319833}
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | --------------------------------------------------
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | 
[2025-12-17 07:00:25] 2025-12-17 11:59:48,399 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-17 07:00:25] 2025-12-17 11:59:48,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 07:00:25] 2025-12-17 11:59:48,425 | INFO     | job 6929222508 has completed (purged errors)
[2025-12-17 07:00:25] 2025-12-17 11:59:48,425 | INFO     | overall cleanup function is called
[2025-12-17 07:00:25] 2025-12-17 11:59:49,434 | INFO     | --- collectZombieJob: --- 10, [2101]
[2025-12-17 07:00:25] 2025-12-17 11:59:49,434 | INFO     | zombie collector waiting for pid 2101
[2025-12-17 07:00:25] 2025-12-17 11:59:49,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 07:00:25] 2025-12-17 11:59:49,434 | INFO     | collected zombie processes
[2025-12-17 07:00:25] 2025-12-17 11:59:49,434 | INFO     | will attempt to kill all subprocesses of pid=2101
[2025-12-17 07:00:25] 2025-12-17 11:59:49,524 | INFO     | process IDs to be killed: [2101] (in reverse order)
[2025-12-17 07:00:25] 2025-12-17 11:59:49,575 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 07:00:25] 2025-12-17 11:59:49,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 07:00:25] 2025-12-17 11:59:49,579 | INFO     | did not find any defunct processes belonging to 2101
[2025-12-17 07:00:25] 2025-12-17 11:59:49,581 | INFO     | did not find any defunct processes belonging to 2101
[2025-12-17 07:00:25] 2025-12-17 11:59:49,581 | INFO     | ready for new job
[2025-12-17 07:00:25] 2025-12-17 11:59:49,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 07:00:25] 2025-12-17 11:59:49,582 | INFO     | ***************************************
[2025-12-17 07:00:25] 2025-12-17 11:59:49,582 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 07:00:25] 2025-12-17 11:59:49,583 | INFO     | ***************************************
[2025-12-17 07:00:25] 2025-12-17 11:59:49,583 | INFO     | 
[2025-12-17 07:00:25] 2025-12-17 11:59:49,583 | INFO     | architecture information:
[2025-12-17 07:00:25] 2025-12-17 11:59:49,584 | INFO     | executing command: cat /etc/os-release
[2025-12-17 07:00:25] 2025-12-17 11:59:49,598 | INFO     | cat /etc/os-release:
[2025-12-17 07:00:25] NAME="CentOS Linux"
[2025-12-17 07:00:25] VERSION="7 (Core)"
[2025-12-17 07:00:25] ID="centos"
[2025-12-17 07:00:25] ID_LIKE="rhel fedora"
[2025-12-17 07:00:25] VERSION_ID="7"
[2025-12-17 07:00:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 07:00:25] ANSI_COLOR="0;31"
[2025-12-17 07:00:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 07:00:25] HOME_URL="https://www.centos.org/"
[2025-12-17 07:00:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 07:00:25] 
[2025-12-17 07:00:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 07:00:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 07:00:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 07:00:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 07:00:25] 
[2025-12-17 07:00:25] 2025-12-17 11:59:49,598 | INFO     | ***************************************
[2025-12-17 07:00:25] 2025-12-17 11:59:50,101 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-17 07:00:25] 2025-12-17 11:59:50,158 | INFO     | sufficient remaining disk space (29448208384 B)
[2025-12-17 07:00:25] 2025-12-17 11:59:50,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 07:00:25] 2025-12-17 11:59:50,158 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 07:00:25] 2025-12-17 11:59:50,158 | INFO     | update_server=False
[2025-12-17 07:00:25] 2025-12-17 11:59:50,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 07:00:25] 2025-12-17 11:59:50,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 07:00:25] 2025-12-17 11:59:50,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 07:00:25] 2025-12-17 11:59:50,159 | INFO     | aborting loop
[2025-12-17 07:00:25] 2025-12-17 11:59:50,658 | INFO     | all data control threads have been joined
[2025-12-17 07:00:25] 2025-12-17 11:59:50,878 | INFO     | all payload control threads have been joined
[2025-12-17 07:00:25] 2025-12-17 11:59:50,994 | INFO     | all job control threads have been joined
[2025-12-17 07:00:25] 2025-12-17 11:59:51,164 | INFO     | [job] retrieve thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,165 | INFO     | [job] queue monitor thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,165 | INFO     | [job] job monitor thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,307 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,355 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 07:00:25] 2025-12-17 11:59:51,477 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,495 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,661 | INFO     | [data] control thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,883 | INFO     | [payload] control thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,898 | INFO     | [data] copytool_in thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,967 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:51,999 | INFO     | [job] control thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:52,256 | INFO     | [payload] validate_post thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:52,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 07:00:25] 2025-12-17 11:59:52,353 | INFO     | [payload] failed_post thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:52,418 | INFO     | [job] validate thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:53,360 | INFO     | [data] copytool_out thread has finished
[2025-12-17 07:00:25] 2025-12-17 11:59:56,285 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 07:00:25] 2025-12-17 12:00:18,345 | INFO     | [monitor] cgroup control has ended
[2025-12-17 07:00:25] 2025-12-17 12:00:20,291 | INFO     | PID=28073 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-17 07:00:25] 2025-12-17 12:00:20,292 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 07:00:25] 2025-12-17 12:00:20,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 07:00:25] 2025-12-17 12:00:20,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 07:00:25] 2025-12-17 12:00:20,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715230201664)>', '<ExcThread(monitor, started 139714195609344)>']
[2025-12-17 07:00:25] 2025-12-17 12:00:21,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 07:00:25] 2025-12-17 12:00:21,298 | INFO     | [monitor] control thread has ended
[2025-12-17 07:00:25] 2025-12-17 12:00:25,467 | INFO     | all workflow threads have been joined
[2025-12-17 07:00:25] 2025-12-17 12:00:25,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 07:00:25] 2025-12-17 12:00:25,467 | INFO     | traces error code: 0
[2025-12-17 07:00:25] 2025-12-17 12:00:25,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 07:00:25] 2025-12-17 12:00:25,558 [wrapper] ==== pilot stdout END ====
[2025-12-17 07:00:25] 2025-12-17 12:00:25,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 07:00:25] 2025-12-17 12:00:25,566 [wrapper] pilotpid: 28073
[2025-12-17 07:00:25] 2025-12-17 12:00:25,570 [wrapper] Pilot exit status: 0
[2025-12-17 07:00:25] 2025-12-17 12:00:25,585 [wrapper] pandaids: 6929222508
[2025-12-17 07:00:25] 2025-12-17 12:00:25,630 [wrapper] cleanup supervisor_pilot 32623 28074
[2025-12-17 07:00:25] 2025-12-17 12:00:25,634 [wrapper] Test setup, not cleaning
[2025-12-17 07:00:25] 2025-12-17 12:00:25,638 [wrapper] apfmon messages muted
[2025-12-17 07:00:25] 2025-12-17 12:00:25,641 [wrapper] ==== wrapper stdout END ====
[2025-12-17 07:00:25] 2025-12-17 12:00:25,645 [wrapper] ==== wrapper stderr END ====
[2025-12-17 07:00:25]  *** Error codes and diagnostics ***
[2025-12-17 07:00:25]     "exeErrorCode": 0,
[2025-12-17 07:00:25]     "exeErrorDiag": "",
[2025-12-17 07:00:25]     "pilotErrorCode": 0,
[2025-12-17 07:00:25]     "pilotErrorDiag": "",
[2025-12-17 07:00:25]  *** Listing of results directory ***
[2025-12-17 07:00:25] total 341352
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:48 pilot3.tar.gz
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 03:48 queuedata.json
[2025-12-17 07:00:25] -rwx------ 1 boincer umatlas     36322 Dec 13 03:48 runpilot2-wrapper.sh
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas       100 Dec 17 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 07:00:25] -rwxr-xr-x 1 boincer umatlas      7986 Dec 17 05:40 run_atlas
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas       105 Dec 17 05:40 job.xml
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas 193359123 Dec 17 05:40 EVNT.47886829._000179.pool.root.1
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 05:40 start_atlas.sh
[2025-12-17 07:00:25] drwxrwx--x 2 boincer umatlas      4096 Dec 17 05:40 shared
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas    592414 Dec 17 05:40 input.tar.gz
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas         0 Dec 17 05:40 boinc_lockfile
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas      2537 Dec 17 05:40 pandaJob.out
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas        57 Dec 17 05:40 setup.sh.local
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas    987423 Dec 17 05:41 agis_schedconf.cvmfs.json
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas   1516240 Dec 17 05:41 agis_ddmendpoints.agis.ALL.json
[2025-12-17 07:00:25] drwx------ 5 boincer umatlas      4096 Dec 17 05:41 pilot3
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas      5953 Dec 17 06:55 init_data.xml
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas 150110368 Dec 17 06:59 HITS.47886831._004475.pool.root.1
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas      1057 Dec 17 06:59 memory_monitor_summary.json
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas       529 Dec 17 06:59 boinc_task_state.xml
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas    393949 Dec 17 06:59 log.47886831._004475.job.log.tgz.1
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas      7848 Dec 17 06:59 heartbeat.json
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas      8192 Dec 17 07:00 boinc_mmap_file
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas        27 Dec 17 07:00 wrapper_checkpoint.txt
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas        95 Dec 17 07:00 pilot_heartbeat.json
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas      4746 Dec 17 07:00 pilotlog.txt
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas    680973 Dec 17 07:00 log.47886831._004475.job.log.1
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas       357 Dec 17 07:00 output.list
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas       620 Dec 17 07:00 runtime_log
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas   1095680 Dec 17 07:00 result.tar.gz
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas      9344 Dec 17 07:00 runtime_log.err
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas       659 Dec 17 07:00 lXhMDmnTao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8BOKDmzWpEVm.diag
[2025-12-17 07:00:25] -rw-r--r-- 1 boincer umatlas     21933 Dec 17 07:00 stderr.txt
[2025-12-17 07:00:25] HITS file was successfully produced:
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas 150110368 Dec 17 06:59 shared/HITS.pool.root.1
[2025-12-17 07:00:25]  *** Contents of shared directory: ***
[2025-12-17 07:00:25] total 337100
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas 193359123 Dec 17 05:40 ATLAS.root_0
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 05:40 start_atlas.sh
[2025-12-17 07:00:25] -rw-r--r-- 2 boincer umatlas    592414 Dec 17 05:40 input.tar.gz
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas 150110368 Dec 17 06:59 HITS.pool.root.1
[2025-12-17 07:00:25] -rw------- 1 boincer umatlas   1095680 Dec 17 07:00 result.tar.gz
07:00:27 (24329): run_atlas exited; CPU time 50516.519611
07:00:27 (24329): called boinc_finish(0)

</stderr_txt>
]]>

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