Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
12:07:55 (152141): wrapper (7.7.26015): starting
12:07:55 (152141): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 12:07:55] Arguments: --nthreads 4
[2025-12-17 12:07:55] Threads: 4
[2025-12-17 12:07:55] Checking for CVMFS
[2025-12-17 12:07:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 12:07:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 12:07:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 12:07:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 12:07:56] 2.13.1.0 45898 5187 104648 154110 3 9 7058339 10240000 1822 130560 0 10228682 99.996 197939 291 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 12:07:56] CVMFS is ok
[2025-12-17 12:07:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 12:07:56] Checking for apptainer binary...
[2025-12-17 12:07:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 12:07:56] Running /usr/bin/apptainer --version
[2025-12-17 12:07:56] apptainer version 1.4.4
[2025-12-17 12:07:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 12:07:57] ellievl
[2025-12-17 12:07:57] apptainer works
[2025-12-17 12:07:57] Set ATHENA_PROC_NUMBER=4
[2025-12-17 12:07:57] Set ATHENA_CORE_NUMBER=4
[2025-12-17 12:07:57] Starting ATLAS job with PandaID=6931733558
[2025-12-17 12:07:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 13:40:30]  *** The last 200 lines of the pilot log: ***
[2025-12-17 13:40:30]  surl=/var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931733558/log.47886831._016311.job.log.tgz.1
[2025-12-17 13:40:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/bd/log.47886831._016311.job.log.tgz.1
[2025-12-17 13:40:30]  workdir=None
[2025-12-17 13:40:30] ]
[2025-12-17 13:40:30] 2025-12-17 12:39:45,109 | INFO     | transferring file log.47886831._016311.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931733558/log.47886831._016311.job.log.tgz.1 to /var/li
[2025-12-17 13:40:30] 2025-12-17 12:39:45,109 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931733558/log.47886831._016311.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-17 13:40:30] 2025-12-17 12:39:45,140 | INFO     | adding to output.list: log.47886831._016311.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/bd/log.47886831._016311.job.log.tg
[2025-12-17 13:40:30] 2025-12-17 12:39:45,141 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 13:40:30] 2025-12-17 12:39:45,141 | INFO     | summary of transferred files:
[2025-12-17 13:40:30] 2025-12-17 12:39:45,141 | INFO     |  -- lfn=log.47886831._016311.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 13:40:30] 2025-12-17 12:39:45,142 | INFO     | stage-out finished correctly
[2025-12-17 13:40:30] 2025-12-17 12:39:47,092 | INFO     | time since job start (5492s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:48,669 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 13:40:30] 2025-12-17 12:39:49,100 | INFO     | time since job start (5494s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:50,791 | INFO     | job 6931733558 has state=finished
[2025-12-17 13:40:30] 2025-12-17 12:39:50,791 | INFO     | preparing for final server update for job 6931733558 in state='finished'
[2025-12-17 13:40:30] 2025-12-17 12:39:50,791 | INFO     | this job has now completed (state=finished)
[2025-12-17 13:40:30] 2025-12-17 12:39:50,791 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 13:40:30] 2025-12-17 12:39:50,791 | INFO     | log transfer has been attempted: DONE
[2025-12-17 13:40:30] 2025-12-17 12:39:50,792 | INFO     | job 6931733558 has finished - writing final server update
[2025-12-17 13:40:30] 2025-12-17 12:39:50,792 | INFO     | total number of processed events: 400 (read)
[2025-12-17 13:40:30] 2025-12-17 12:39:50,792 | INFO     | executing command: lscpu
[2025-12-17 13:40:30] 2025-12-17 12:39:50,832 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 13:40:30] 2025-12-17 12:39:51,107 | INFO     | time since job start (5496s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:51,107 | INFO     | 5498s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-17 13:40:30] 2025-12-17 12:39:51,245 | WARNING  | process 162636 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 13:40:30] 2025-12-17 12:39:51,246 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931733558/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 13:40:30] 2025-12-17 12:39:51,505 | INFO     | number of running child processes to parent process 162636: 1
[2025-12-17 13:40:30] 2025-12-17 12:39:51,505 | INFO     | maximum number of monitored processes: 6
[2025-12-17 13:40:30] 2025-12-17 12:39:53,114 | INFO     | time since job start (5498s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:54,010 | INFO     | monitor loop #409: job 0:6931733558 is in state 'finished'
[2025-12-17 13:40:30] 2025-12-17 12:39:54,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:30] 2025-12-17 12:39:55,121 | INFO     | time since job start (5500s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:56,514 | INFO     | monitor loop #410: job 0:6931733558 is in state 'finished'
[2025-12-17 13:40:30] 2025-12-17 12:39:56,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 13:40:30] 2025-12-17 12:39:57,126 | INFO     | time since job start (5502s) is within the limit (174528.0s)
[2025-12-17 13:40:30] 2025-12-17 12:39:57,974 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 13:40:30] 2025-12-17 12:39:57,975 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.0359999999987
[2025-12-17 13:40:30] 2025-12-17 12:39:57,977 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-6931733558/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 13:40:30] 2025-12-17 12:39:57,977 | INFO     | extracted standard info from prmon json
[2025-12-17 13:40:30] 2025-12-17 12:39:57,977 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 13:40:30] 2025-12-17 12:39:57,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 13:40:30] 2025-12-17 12:39:57,978 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 13:40:30] 2025-12-17 12:39:57,978 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 13:40:30] 2025-12-17 12:39:57,979 | INFO     | fitting pss+swap vs Time
[2025-12-17 13:40:30] 2025-12-17 12:39:57,980 | INFO     | sum of square deviations: 177275882.0
[2025-12-17 13:40:30] 2025-12-17 12:39:57,980 | INFO     | sum of deviations: -1069782010.0000002
[2025-12-17 13:40:30] 2025-12-17 12:39:57,980 | INFO     | mean x: 1765972540.0
[2025-12-17 13:40:30] 2025-12-17 12:39:57,980 | INFO     | mean y: 2322173.2409638553
[2025-12-17 13:40:30] 2025-12-17 12:39:57,981 | INFO     | intersect: 10659190056.972635
[2025-12-17 13:40:30] 2025-12-17 12:39:57,981 | INFO     | chi2: 0.0461068917755983
[2025-12-17 13:40:30] 2025-12-17 12:39:57,981 | INFO     | current memory leak: -6.03 B/s (using 83 data points, chi2=0.05)
[2025-12-17 13:40:30] 2025-12-17 12:39:57,981 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | ..............................
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . Timing measurements:
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . get job = 0 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . initial setup = 2 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . payload setup = 11 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . stage-in = 0 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . payload execution = 5456 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . stage-out = 0 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | . log creation = 0 s
[2025-12-17 13:40:30] 2025-12-17 12:39:57,982 | INFO     | ..............................
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | 
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | job summary report
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | --------------------------------------------------
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | PanDA job id: 6931733558
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | task id: 47886831
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | errors: (none)
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 13:40:30] 2025-12-17 12:39:58,026 | INFO     | pilot state: finished 
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | transexitcode: 0
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | exeerrorcode: 0
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | exeerrordiag: 
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | exitcode: 0
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | exitmsg: OK
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | cpuconsumptiontime: 20668 s
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | nevents: 400
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | neventsw: 0
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | pid: 162636
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | pgrp: 162636
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | corecount: 4
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | event service: False
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | sizes: {0: 2284007, 8: 2284269, 11: 2284297, 5471: 2310962, 5472: 2319988, 5475: 2320044, 5485: 2320366}
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | --------------------------------------------------
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | 
[2025-12-17 13:40:30] 2025-12-17 12:39:58,027 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3
[2025-12-17 13:40:30] 2025-12-17 12:39:58,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 13:40:30] 2025-12-17 12:39:58,060 | INFO     | job 6931733558 has completed (purged errors)
[2025-12-17 13:40:30] 2025-12-17 12:39:58,061 | INFO     | overall cleanup function is called
[2025-12-17 13:40:30] 2025-12-17 12:39:59,069 | INFO     | --- collectZombieJob: --- 10, [162636]
[2025-12-17 13:40:30] 2025-12-17 12:39:59,069 | INFO     | zombie collector waiting for pid 162636
[2025-12-17 13:40:30] 2025-12-17 12:39:59,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 13:40:30] 2025-12-17 12:39:59,069 | INFO     | collected zombie processes
[2025-12-17 13:40:30] 2025-12-17 12:39:59,069 | INFO     | will attempt to kill all subprocesses of pid=162636
[2025-12-17 13:40:30] 2025-12-17 12:39:59,284 | INFO     | process IDs to be killed: [162636] (in reverse order)
[2025-12-17 13:40:30] 2025-12-17 12:39:59,370 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 13:40:30] 2025-12-17 12:39:59,371 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 13:40:30] 2025-12-17 12:39:59,376 | INFO     | did not find any defunct processes belonging to 162636
[2025-12-17 13:40:30] 2025-12-17 12:39:59,381 | INFO     | did not find any defunct processes belonging to 162636
[2025-12-17 13:40:30] 2025-12-17 12:39:59,381 | INFO     | ready for new job
[2025-12-17 13:40:30] 2025-12-17 12:39:59,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 13:40:30] 2025-12-17 12:39:59,384 | INFO     | ***************************************
[2025-12-17 13:40:30] 2025-12-17 12:39:59,384 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 13:40:30] 2025-12-17 12:39:59,384 | INFO     | ***************************************
[2025-12-17 13:40:30] 2025-12-17 12:39:59,384 | INFO     | 
[2025-12-17 13:40:30] 2025-12-17 12:39:59,385 | INFO     | pilot is running in a VM
[2025-12-17 13:40:30] 2025-12-17 12:39:59,385 | INFO     | architecture information:
[2025-12-17 13:40:30] 2025-12-17 12:39:59,385 | INFO     | executing command: cat /etc/os-release
[2025-12-17 13:40:30] 2025-12-17 12:39:59,405 | INFO     | cat /etc/os-release:
[2025-12-17 13:40:30] NAME="CentOS Linux"
[2025-12-17 13:40:30] VERSION="7 (Core)"
[2025-12-17 13:40:30] ID="centos"
[2025-12-17 13:40:30] ID_LIKE="rhel fedora"
[2025-12-17 13:40:30] VERSION_ID="7"
[2025-12-17 13:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 13:40:30] ANSI_COLOR="0;31"
[2025-12-17 13:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 13:40:30] HOME_URL="https://www.centos.org/"
[2025-12-17 13:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 13:40:30] 
[2025-12-17 13:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 13:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 13:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 13:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 13:40:30] 
[2025-12-17 13:40:30] 2025-12-17 12:39:59,405 | INFO     | ***************************************
[2025-12-17 13:40:30] 2025-12-17 12:39:59,909 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/3
[2025-12-17 13:40:30] 2025-12-17 12:39:59,927 | INFO     | sufficient remaining disk space (55710842880 B)
[2025-12-17 13:40:30] 2025-12-17 12:39:59,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 13:40:30] 2025-12-17 12:39:59,928 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 13:40:30] 2025-12-17 12:39:59,928 | INFO     | update_server=False
[2025-12-17 13:40:30] 2025-12-17 12:39:59,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 13:40:30] 2025-12-17 12:39:59,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:40:30] 2025-12-17 12:39:59,929 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 13:40:30] 2025-12-17 12:39:59,987 | INFO     | all payload control threads have been joined
[2025-12-17 13:40:30] 2025-12-17 12:39:59,994 | INFO     | all job control threads have been joined
[2025-12-17 13:40:30] 2025-12-17 12:40:00,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:40:30] 2025-12-17 12:40:00,025 | INFO     | aborting loop
[2025-12-17 13:40:30] 2025-12-17 12:40:00,649 | INFO     | all data control threads have been joined
[2025-12-17 13:40:30] 2025-12-17 12:40:00,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 13:40:30] 2025-12-17 12:40:00,934 | INFO     | [job] retrieve thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:00,935 | INFO     | [job] queue monitor thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:00,992 | INFO     | [payload] control thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,000 | INFO     | [job] control thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,031 | INFO     | [job] job monitor thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,245 | INFO     | [payload] validate_post thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,654 | INFO     | [data] control thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,657 | INFO     | [payload] failed_post thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,714 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,729 | INFO     | [job] validate thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:01,742 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:02,045 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:02,102 | INFO     | [data] copytool_in thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:02,721 | INFO     | [data] copytool_out thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:03,934 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:10,107 | INFO     | job.realtimelogging is not enabled
[2025-12-17 13:40:30] 2025-12-17 12:40:11,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 13:40:30] 2025-12-17 12:40:21,307 | INFO     | [monitor] cgroup control has ended
[2025-12-17 13:40:30] 2025-12-17 12:40:22,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138409628759872)>', '<ExcThread(monitor, started 138408391333632)>']
[2025-12-17 13:40:30] 2025-12-17 12:40:27,234 | INFO     | all workflow threads have been joined
[2025-12-17 13:40:30] 2025-12-17 12:40:27,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 13:40:30] 2025-12-17 12:40:27,235 | INFO     | traces error code: 0
[2025-12-17 13:40:30] 2025-12-17 12:40:27,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 13:40:30] 2025-12-17 12:40:30,468 | INFO     | PID=155999 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 13:40:30] 2025-12-17 12:40:30,468 | INFO     | .. there are 3 such processes running
[2025-12-17 13:40:30] 2025-12-17 12:40:30,469 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 13:40:30] 2025-12-17 12:40:30,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 13:40:30] 2025-12-17 12:40:30,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 13:40:30] 2025-12-17 12:40:30,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 13:40:30] 2025-12-17 12:40:30,469 | INFO     | [monitor] control thread has ended
[2025-12-17 13:40:30] 2025-12-17 12:40:30,568 [wrapper] ==== pilot stdout END ====
[2025-12-17 13:40:30] 2025-12-17 12:40:30,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 13:40:30] 2025-12-17 12:40:30,583 [wrapper] pilotpid: 155999
[2025-12-17 13:40:30] 2025-12-17 12:40:30,589 [wrapper] Pilot exit status: 0
[2025-12-17 13:40:30] 2025-12-17 12:40:30,612 [wrapper] pandaids: 6931733558
[2025-12-17 13:40:30] 2025-12-17 12:40:30,695 [wrapper] cleanup supervisor_pilot  232943 156000
[2025-12-17 13:40:30] 2025-12-17 12:40:30,702 [wrapper] Test setup, not cleaning
[2025-12-17 13:40:30] 2025-12-17 12:40:30,708 [wrapper] apfmon messages muted
[2025-12-17 13:40:30] 2025-12-17 12:40:30,715 [wrapper] ==== wrapper stdout END ====
[2025-12-17 13:40:30] 2025-12-17 12:40:30,720 [wrapper] ==== wrapper stderr END ====
[2025-12-17 13:40:30]  *** Error codes and diagnostics ***
[2025-12-17 13:40:30]     "exeErrorCode": 0,
[2025-12-17 13:40:30]     "exeErrorDiag": "",
[2025-12-17 13:40:30]     "pilotErrorCode": 0,
[2025-12-17 13:40:30]     "pilotErrorDiag": "",
[2025-12-17 13:40:30]  *** Listing of results directory ***
[2025-12-17 13:40:30] insgesamt 337424
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc    579449 Dez 16 23:36 pilot3.tar.gz
[2025-12-17 13:40:30] -rwx------ 1 yeti boinc     36322 Dez 16 23:39 runpilot2-wrapper.sh
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc      5112 Dez 16 23:43 queuedata.json
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc       100 Dez 17 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 13:40:30] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 12:07 run_atlas
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc       105 Dez 17 12:07 job.xml
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc 194474630 Dez 17 12:07 EVNT.47886829._000651.pool.root.1
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc     15847 Dez 17 12:07 start_atlas.sh
[2025-12-17 13:40:30] drwxrwx--x 2 yeti boinc      4096 Dez 17 12:07 shared
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc    592416 Dez 17 12:07 input.tar.gz
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc      6556 Dez 17 12:07 init_data.xml
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc         0 Dez 17 12:07 boinc_setup_complete
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc         0 Dez 17 12:07 boinc_lockfile
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc      2539 Dez 17 12:07 pandaJob.out
[2025-12-17 13:40:30] -rw------- 1 yeti boinc        52 Dez 17 12:07 setup.sh.local
[2025-12-17 13:40:30] -rw------- 1 yeti boinc    987423 Dez 17 12:08 agis_schedconf.cvmfs.json
[2025-12-17 13:40:30] -rw------- 1 yeti boinc   1516240 Dez 17 12:08 agis_ddmendpoints.agis.ALL.json
[2025-12-17 13:40:30] drwx------ 5 yeti boinc      4096 Dez 17 12:08 pilot3
[2025-12-17 13:40:30] -rw------- 1 yeti boinc 144960860 Dez 17 13:39 HITS.47886831._016311.pool.root.1
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc       529 Dez 17 13:39 boinc_task_state.xml
[2025-12-17 13:40:30] -rw------- 1 yeti boinc      1023 Dez 17 13:39 memory_monitor_summary.json
[2025-12-17 13:40:30] -rw------- 1 yeti boinc    277456 Dez 17 13:39 log.47886831._016311.job.log.tgz.1
[2025-12-17 13:40:30] -rw------- 1 yeti boinc        95 Dez 17 13:39 pilot_heartbeat.json
[2025-12-17 13:40:30] -rw------- 1 yeti boinc      7731 Dez 17 13:39 heartbeat.json
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc      8192 Dez 17 13:40 boinc_mmap_file
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc        27 Dez 17 13:40 wrapper_checkpoint.txt
[2025-12-17 13:40:30] -rw------- 1 yeti boinc       821 Dez 17 13:40 pilotlog.txt
[2025-12-17 13:40:30] -rw------- 1 yeti boinc    810380 Dez 17 13:40 log.47886831._016311.job.log.1
[2025-12-17 13:40:30] -rw------- 1 yeti boinc       357 Dez 17 13:40 output.list
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc       620 Dez 17 13:40 runtime_log
[2025-12-17 13:40:30] -rw------- 1 yeti boinc   1105920 Dez 17 13:40 result.tar.gz
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc      9537 Dez 17 13:40 runtime_log.err
[2025-12-17 13:40:30] -rw------- 1 yeti boinc       637 Dez 17 13:40 EEwNDm3ssp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfyaKDmXq2BEn.diag
[2025-12-17 13:40:30] -rw-r--r-- 1 yeti boinc     22040 Dez 17 13:40 stderr.txt
[2025-12-17 13:40:30] HITS file was successfully produced:
[2025-12-17 13:40:30] -rw------- 1 yeti boinc 144960860 Dez 17 13:39 shared/HITS.pool.root.1
[2025-12-17 13:40:30]  *** Contents of shared directory: ***
[2025-12-17 13:40:30] insgesamt 333168
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc 194474630 Dez 17 12:07 ATLAS.root_0
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc     15847 Dez 17 12:07 start_atlas.sh
[2025-12-17 13:40:30] -rw-r--r-- 2 yeti boinc    592416 Dez 17 12:07 input.tar.gz
[2025-12-17 13:40:30] -rw------- 1 yeti boinc 144960860 Dez 17 13:39 HITS.pool.root.1
[2025-12-17 13:40:30] -rw------- 1 yeti boinc   1105920 Dez 17 13:40 result.tar.gz
13:40:32 (152141): run_atlas exited; CPU time 20891.089244
13:40:32 (152141): called boinc_finish(0)

</stderr_txt>
]]>

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