Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
13:20:45 (212455): wrapper (7.7.26015): starting
13:20:45 (212455): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 13:20:45] Arguments: --nthreads 4
[2025-12-17 13:20:45] Threads: 4
[2025-12-17 13:20:45] Checking for CVMFS
[2025-12-17 13:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 13:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 13:20:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 13:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 13:20:45] 2.13.1.0 45898 5260 104908 154111 3 188 7109248 10240000 1822 130560 0 10377050 99.996 199354 291 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 13:20:45] CVMFS is ok
[2025-12-17 13:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 13:20:45] Checking for apptainer binary...
[2025-12-17 13:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 13:20:45] Running /usr/bin/apptainer --version
[2025-12-17 13:20:46] apptainer version 1.4.4
[2025-12-17 13:20:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 13:20:46] ellievl
[2025-12-17 13:20:46] apptainer works
[2025-12-17 13:20:46] Set ATHENA_PROC_NUMBER=4
[2025-12-17 13:20:46] Set ATHENA_CORE_NUMBER=4
[2025-12-17 13:20:46] Starting ATLAS job with PandaID=6931733295
[2025-12-17 13:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:54:16]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:54:16] 2025-12-17 13:53:21,346 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 14:54:16] 2025-12-17 13:53:21,346 | INFO     | summary of transferred files:
[2025-12-17 14:54:16] 2025-12-17 13:53:21,346 | INFO     |  -- lfn=log.47886933._007806.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 14:54:16] 2025-12-17 13:53:21,346 | INFO     | stage-out finished correctly
[2025-12-17 14:54:16] 2025-12-17 13:53:21,440 | INFO     | time since job start (5538s) is within the limit (174528.0s)
[2025-12-17 14:54:16] 2025-12-17 13:53:22,341 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 14:54:16] 2025-12-17 13:53:23,447 | INFO     | time since job start (5540s) is within the limit (174528.0s)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,517 | INFO     | job 6931733295 has state=finished
[2025-12-17 14:54:16] 2025-12-17 13:53:23,518 | INFO     | preparing for final server update for job 6931733295 in state='finished'
[2025-12-17 14:54:16] 2025-12-17 13:53:23,519 | INFO     | this job has now completed (state=finished)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,519 | INFO     | log transfer has been attempted: DONE
[2025-12-17 14:54:16] 2025-12-17 13:53:23,519 | INFO     | job 6931733295 has finished - writing final server update
[2025-12-17 14:54:16] 2025-12-17 13:53:23,519 | INFO     | total number of processed events: 400 (read)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,522 | INFO     | executing command: lscpu
[2025-12-17 14:54:16] 2025-12-17 13:53:23,563 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 14:54:16] 2025-12-17 13:53:23,756 | WARNING  | process 222956 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 14:54:16] 2025-12-17 13:53:23,757 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,759 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:54:16] 2025-12-17 13:53:23,759 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-17 14:54:16] 2025-12-17 13:53:23,759 | WARNING  | maxPSS not found in memory monitor output
[2025-12-17 14:54:16] 2025-12-17 13:53:23,760 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2517210 B
[2025-12-17 14:54:16] 2025-12-17 13:53:23,760 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15624 B
[2025-12-17 14:54:16] 2025-12-17 13:53:23,760 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2025-12-17 14:54:16] 2025-12-17 13:53:25,453 | INFO     | time since job start (5542s) is within the limit (174528.0s)
[2025-12-17 14:54:16] 2025-12-17 13:53:27,459 | INFO     | time since job start (5544s) is within the limit (174528.0s)
[2025-12-17 14:54:16] 2025-12-17 13:53:29,466 | INFO     | time since job start (5546s) is within the limit (174528.0s)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,778 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 14:54:16] 2025-12-17 13:53:30,785 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.0359999999987
[2025-12-17 14:54:16] 2025-12-17 13:53:30,790 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,790 | INFO     | extracted standard info from prmon json
[2025-12-17 14:54:16] 2025-12-17 13:53:30,791 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:54:16] 2025-12-17 13:53:30,791 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:54:16] 2025-12-17 13:53:30,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:54:16] 2025-12-17 13:53:30,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:54:16] 2025-12-17 13:53:30,793 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | sum of square deviations: 183761585.0
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | sum of deviations: -5957613098.5
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | mean x: 1765976937.5
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | mean y: 2357312.75
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | intersect: 57255930384.0691
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | chi2: 0.04577380184335548
[2025-12-17 14:54:16] 2025-12-17 13:53:30,794 | INFO     | current memory leak: -32.42 B/s (using 84 data points, chi2=0.05)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | ..............................
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . Timing measurements:
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . get job = 0 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . initial setup = 2 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . payload setup = 10 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . stage-in = 0 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . payload execution = 5505 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . stage-out = 0 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | . log creation = 0 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,795 | INFO     | ..............................
[2025-12-17 14:54:16] 2025-12-17 13:53:30,822 | INFO     | sufficient remaining disk space (55122591744 B)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,822 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,844 | INFO     | 
[2025-12-17 14:54:16] 2025-12-17 13:53:30,844 | INFO     | job summary report
[2025-12-17 14:54:16] 2025-12-17 13:53:30,844 | INFO     | --------------------------------------------------
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | PanDA job id: 6931733295
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | task id: 47886933
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | errors: (none)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | pilot state: finished 
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | transexitcode: 0
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | exeerrorcode: 0
[2025-12-17 14:54:16] 2025-12-17 13:53:30,845 | INFO     | exeerrordiag: 
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | exitcode: 0
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | exitmsg: OK
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | cpuconsumptiontime: 21044 s
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | nevents: 400
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | neventsw: 0
[2025-12-17 14:54:16] 2025-12-17 13:53:30,846 | INFO     | pid: 222956
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | pgrp: 222956
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | corecount: 4
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | event service: False
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | sizes: {0: 2283809, 1: 2284008, 8: 2284270, 11: 2284298, 5519: 2310961, 5520: 2319987, 5521: 2320171, 5529: 2320365}
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | --------------------------------------------------
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | 
[2025-12-17 14:54:16] 2025-12-17 13:53:30,847 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2025-12-17 14:54:16] 2025-12-17 13:53:30,854 | INFO     | size of work directory /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295: 2818958 B (within 2768240640 B limit)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,856 | INFO     | pfn file=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295/HITS.47886933._007806.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,856 | INFO     | total size of present files: 0 B (workdir size: 2818958 B)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,857 | INFO     | output file size check: skipping output file /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6931733295/HITS.47886933._007806.pool.root.1 since it does not exist
[2025-12-17 14:54:16] 2025-12-17 13:53:30,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,876 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,876 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,876 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,879 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:54:16] 2025-12-17 13:53:30,879 | INFO     | job 6931733295 has completed (purged errors)
[2025-12-17 14:54:16] 2025-12-17 13:53:30,879 | INFO     | overall cleanup function is called
[2025-12-17 14:54:16] 2025-12-17 13:53:31,080 | INFO     | number of running child processes to parent process 222956: 1
[2025-12-17 14:54:16] 2025-12-17 13:53:31,080 | INFO     | maximum number of monitored processes: 6
[2025-12-17 14:54:16] 2025-12-17 13:53:31,080 | INFO     | aborting job monitoring since job object (job id=6931733295) has expired
[2025-12-17 14:54:16] 2025-12-17 13:53:31,890 | INFO     | --- collectZombieJob: --- 10, [222956]
[2025-12-17 14:54:16] 2025-12-17 13:53:31,890 | INFO     | zombie collector waiting for pid 222956
[2025-12-17 14:54:16] 2025-12-17 13:53:31,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:54:16] 2025-12-17 13:53:31,890 | INFO     | collected zombie processes
[2025-12-17 14:54:16] 2025-12-17 13:53:31,890 | INFO     | will attempt to kill all subprocesses of pid=222956
[2025-12-17 14:54:16] 2025-12-17 13:53:32,102 | INFO     | process IDs to be killed: [222956] (in reverse order)
[2025-12-17 14:54:16] 2025-12-17 13:53:32,196 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:54:16] 2025-12-17 13:53:32,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:54:16] 2025-12-17 13:53:32,203 | INFO     | did not find any defunct processes belonging to 222956
[2025-12-17 14:54:16] 2025-12-17 13:53:32,208 | INFO     | did not find any defunct processes belonging to 222956
[2025-12-17 14:54:16] 2025-12-17 13:53:32,208 | INFO     | ready for new job
[2025-12-17 14:54:16] 2025-12-17 13:53:32,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:54:16] 2025-12-17 13:53:32,210 | INFO     | ***************************************
[2025-12-17 14:54:16] 2025-12-17 13:53:32,211 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:54:16] 2025-12-17 13:53:32,211 | INFO     | ***************************************
[2025-12-17 14:54:16] 2025-12-17 13:53:32,211 | INFO     | 
[2025-12-17 14:54:16] 2025-12-17 13:53:32,211 | INFO     | pilot is running in a VM
[2025-12-17 14:54:16] 2025-12-17 13:53:32,212 | INFO     | architecture information:
[2025-12-17 14:54:16] 2025-12-17 13:53:32,212 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:54:16] 2025-12-17 13:53:32,230 | INFO     | cat /etc/os-release:
[2025-12-17 14:54:16] NAME="CentOS Linux"
[2025-12-17 14:54:16] VERSION="7 (Core)"
[2025-12-17 14:54:16] ID="centos"
[2025-12-17 14:54:16] ID_LIKE="rhel fedora"
[2025-12-17 14:54:16] VERSION_ID="7"
[2025-12-17 14:54:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:54:16] ANSI_COLOR="0;31"
[2025-12-17 14:54:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:54:16] HOME_URL="https://www.centos.org/"
[2025-12-17 14:54:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:54:16] 
[2025-12-17 14:54:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:54:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:54:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:54:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:54:16] 
[2025-12-17 14:54:16] 2025-12-17 13:53:32,230 | INFO     | ***************************************
[2025-12-17 14:54:16] 2025-12-17 13:53:32,734 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2025-12-17 14:54:16] 2025-12-17 13:53:32,753 | INFO     | sufficient remaining disk space (55126786048 B)
[2025-12-17 14:54:16] 2025-12-17 13:53:32,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:54:16] 2025-12-17 13:53:32,754 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:54:16] 2025-12-17 13:53:32,754 | INFO     | update_server=False
[2025-12-17 14:54:16] 2025-12-17 13:53:32,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:54:16] 2025-12-17 13:53:32,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:54:16] 2025-12-17 13:53:32,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:54:16] 2025-12-17 13:53:32,755 | INFO     | aborting loop
[2025-12-17 14:54:16] 2025-12-17 13:53:32,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:54:16] 2025-12-17 13:53:32,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:54:16] 2025-12-17 13:53:33,264 | INFO     | all job control threads have been joined
[2025-12-17 14:54:16] 2025-12-17 13:53:33,502 | INFO     | all data control threads have been joined
[2025-12-17 14:54:16] 2025-12-17 13:53:33,760 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:33,761 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:33,761 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:33,937 | INFO     | [job] validate thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,055 | INFO     | all payload control threads have been joined
[2025-12-17 14:54:16] 2025-12-17 13:53:34,080 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,205 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,239 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,270 | INFO     | [job] control thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,326 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,507 | INFO     | [data] control thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,762 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:34,857 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:35,061 | INFO     | [payload] control thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:35,276 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:36,896 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:53:43,737 | INFO     | job.realtimelogging is not enabled
[2025-12-17 14:54:16] 2025-12-17 13:53:44,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:54:16] 2025-12-17 13:54:02,813 | INFO     | PID=216307 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 14:54:16] 2025-12-17 13:54:02,813 | INFO     | .. there are 3 such processes running
[2025-12-17 14:54:16] 2025-12-17 13:54:02,814 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:54:16] 2025-12-17 13:54:02,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:54:16] 2025-12-17 13:54:02,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:54:16] 2025-12-17 13:54:10,483 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:54:16] 2025-12-17 13:54:11,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132326945285952)>', '<ExcThread(monitor, started 132325845227264)>']
[2025-12-17 14:54:16] 2025-12-17 13:54:11,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:54:16] 2025-12-17 13:54:11,863 | INFO     | [monitor] control thread has ended
[2025-12-17 14:54:16] 2025-12-17 13:54:16,421 | INFO     | all workflow threads have been joined
[2025-12-17 14:54:16] 2025-12-17 13:54:16,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:54:16] 2025-12-17 13:54:16,421 | INFO     | traces error code: 0
[2025-12-17 14:54:16] 2025-12-17 13:54:16,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:54:16] 2025-12-17 13:54:16,510 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:54:16] 2025-12-17 13:54:16,517 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:54:16] 2025-12-17 13:54:16,524 [wrapper] pilotpid: 216307
[2025-12-17 14:54:16] 2025-12-17 13:54:16,529 [wrapper] Pilot exit status: 0
[2025-12-17 14:54:16] 2025-12-17 13:54:16,553 [wrapper] pandaids: 6931733295
[2025-12-17 14:54:16] 2025-12-17 13:54:16,624 [wrapper] cleanup supervisor_pilot  293069 216308
[2025-12-17 14:54:16] 2025-12-17 13:54:16,631 [wrapper] Test setup, not cleaning
[2025-12-17 14:54:16] 2025-12-17 13:54:16,638 [wrapper] apfmon messages muted
[2025-12-17 14:54:16] 2025-12-17 13:54:16,645 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:54:16] 2025-12-17 13:54:16,651 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:54:16]  *** Error codes and diagnostics ***
[2025-12-17 14:54:16]     "exeErrorCode": 0,
[2025-12-17 14:54:16]     "exeErrorDiag": "",
[2025-12-17 14:54:16]     "pilotErrorCode": 0,
[2025-12-17 14:54:16]     "pilotErrorDiag": "",
[2025-12-17 14:54:16]  *** Listing of results directory ***
[2025-12-17 14:54:16] insgesamt 336244
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc    579449 Dez 16 23:36 pilot3.tar.gz
[2025-12-17 14:54:16] -rwx------ 1 yeti boinc     36322 Dez 16 23:40 runpilot2-wrapper.sh
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc      5112 Dez 16 23:43 queuedata.json
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc       100 Dez 17 13:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:54:16] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 13:20 run_atlas
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc       105 Dez 17 13:20 job.xml
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc 191181261 Dez 17 13:20 EVNT.47886929._000299.pool.root.1
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc     15847 Dez 17 13:20 start_atlas.sh
[2025-12-17 14:54:16] drwxrwx--x 2 yeti boinc      4096 Dez 17 13:20 shared
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc    592395 Dez 17 13:20 input.tar.gz
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc      6556 Dez 17 13:20 init_data.xml
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc         0 Dez 17 13:20 boinc_setup_complete
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc         0 Dez 17 13:20 boinc_lockfile
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc      2514 Dez 17 13:20 pandaJob.out
[2025-12-17 14:54:16] -rw------- 1 yeti boinc        52 Dez 17 13:20 setup.sh.local
[2025-12-17 14:54:16] -rw------- 1 yeti boinc    987423 Dez 17 13:21 agis_schedconf.cvmfs.json
[2025-12-17 14:54:16] -rw------- 1 yeti boinc   1516240 Dez 17 13:21 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:54:16] drwx------ 5 yeti boinc      4096 Dez 17 13:21 pilot3
[2025-12-17 14:54:16] -rw------- 1 yeti boinc 147016410 Dez 17 14:53 HITS.47886933._007806.pool.root.1
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc       529 Dez 17 14:53 boinc_task_state.xml
[2025-12-17 14:54:16] -rw------- 1 yeti boinc      1020 Dez 17 14:53 memory_monitor_summary.json
[2025-12-17 14:54:16] -rw------- 1 yeti boinc    281691 Dez 17 14:53 log.47886933._007806.job.log.tgz.1
[2025-12-17 14:54:16] -rw------- 1 yeti boinc      7729 Dez 17 14:53 heartbeat.json
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc      8192 Dez 17 14:54 boinc_mmap_file
[2025-12-17 14:54:16] -rw------- 1 yeti boinc        95 Dez 17 14:54 pilot_heartbeat.json
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc        27 Dez 17 14:54 wrapper_checkpoint.txt
[2025-12-17 14:54:16] -rw------- 1 yeti boinc      4970 Dez 17 14:54 pilotlog.txt
[2025-12-17 14:54:16] -rw------- 1 yeti boinc    816811 Dez 17 14:54 log.47886933._007806.job.log.1
[2025-12-17 14:54:16] -rw------- 1 yeti boinc       357 Dez 17 14:54 output.list
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc       620 Dez 17 14:54 runtime_log
[2025-12-17 14:54:16] -rw------- 1 yeti boinc   1116160 Dez 17 14:54 result.tar.gz
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc      9537 Dez 17 14:54 runtime_log.err
[2025-12-17 14:54:16] -rw------- 1 yeti boinc       636 Dez 17 14:54 BZULDmDtsp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPTWKDmc2AlPn.diag
[2025-12-17 14:54:16] -rw-r--r-- 1 yeti boinc     22237 Dez 17 14:54 stderr.txt
[2025-12-17 14:54:16] HITS file was successfully produced:
[2025-12-17 14:54:16] -rw------- 1 yeti boinc 147016410 Dez 17 14:53 shared/HITS.pool.root.1
[2025-12-17 14:54:16]  *** Contents of shared directory: ***
[2025-12-17 14:54:16] insgesamt 331972
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc 191181261 Dez 17 13:20 ATLAS.root_0
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc     15847 Dez 17 13:20 start_atlas.sh
[2025-12-17 14:54:16] -rw-r--r-- 2 yeti boinc    592395 Dez 17 13:20 input.tar.gz
[2025-12-17 14:54:16] -rw------- 1 yeti boinc 147016410 Dez 17 14:53 HITS.pool.root.1
[2025-12-17 14:54:16] -rw------- 1 yeti boinc   1116160 Dez 17 14:54 result.tar.gz
14:54:17 (212455): run_atlas exited; CPU time 21273.691215
14:54:17 (212455): called boinc_finish(0)

</stderr_txt>
]]>

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