Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
14:37:10 (272418): wrapper (7.7.26015): starting
14:37:10 (272418): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 14:37:10] Arguments: --nthreads 4
[2025-12-17 14:37:10] Threads: 4
[2025-12-17 14:37:10] Checking for CVMFS
[2025-12-17 14:37:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 14:37:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 14:37:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 14:37:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 14:37:11] 2.13.1.0 45898 5337 104736 154112 2 62 7119747 10240000 1822 130560 0 10525541 99.996 200701 292 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-17 14:37:11] CVMFS is ok
[2025-12-17 14:37:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 14:37:11] Checking for apptainer binary...
[2025-12-17 14:37:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 14:37:11] Running /usr/bin/apptainer --version
[2025-12-17 14:37:11] apptainer version 1.4.4
[2025-12-17 14:37:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 14:37:11] ellievl
[2025-12-17 14:37:11] apptainer works
[2025-12-17 14:37:11] Set ATHENA_PROC_NUMBER=4
[2025-12-17 14:37:11] Set ATHENA_CORE_NUMBER=4
[2025-12-17 14:37:11] Starting ATLAS job with PandaID=6931734251
[2025-12-17 14:37:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 16:10:41]  *** The last 200 lines of the pilot log: ***
[2025-12-17 16:10:41] 2025-12-17 15:09:43,530 | INFO     |  -- lfn=log.47886933._007999.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 16:10:41] 2025-12-17 15:09:43,531 | INFO     | stage-out finished correctly
[2025-12-17 16:10:41] 2025-12-17 15:09:43,578 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 16:10:41] 2025-12-17 15:09:44,076 | INFO     | job 6931734251 has state=finished
[2025-12-17 16:10:41] 2025-12-17 15:09:44,077 | INFO     | preparing for final server update for job 6931734251 in state='finished'
[2025-12-17 16:10:41] 2025-12-17 15:09:44,077 | INFO     | this job has now completed (state=finished)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,078 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,078 | INFO     | log transfer has been attempted: DONE
[2025-12-17 16:10:41] 2025-12-17 15:09:44,078 | INFO     | job 6931734251 has finished - writing final server update
[2025-12-17 16:10:41] 2025-12-17 15:09:44,078 | INFO     | total number of processed events: 400 (read)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,079 | INFO     | executing command: lscpu
[2025-12-17 16:10:41] 2025-12-17 15:09:44,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 16:10:41] 2025-12-17 15:09:44,362 | INFO     | time since job start (5536s) is within the limit (174528.0s)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,582 | WARNING  | process 282932 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 16:10:41] 2025-12-17 15:09:44,582 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,583 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,584 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-17 16:10:41] 2025-12-17 15:09:44,584 | WARNING  | maxPSS not found in memory monitor output
[2025-12-17 16:10:41] 2025-12-17 15:09:44,584 | INFO     | reaping zombies for max 20 seconds
[2025-12-17 16:10:41] 2025-12-17 15:09:44,602 | INFO     | checking for looping job (in state=finished)
[2025-12-17 16:10:41] 2025-12-17 15:09:44,603 | INFO     | using looping job limit: 7200 s
[2025-12-17 16:10:41] 2025-12-17 15:09:44,604 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2236067 B
[2025-12-17 16:10:41] 2025-12-17 15:09:44,604 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15377 B
[2025-12-17 16:10:41] 2025-12-17 15:09:44,604 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-17 16:10:41] 2025-12-17 15:09:46,369 | INFO     | time since job start (5538s) is within the limit (174528.0s)
[2025-12-17 16:10:41] 2025-12-17 15:09:48,374 | INFO     | time since job start (5540s) is within the limit (174528.0s)
[2025-12-17 16:10:41] 2025-12-17 15:09:50,380 | INFO     | time since job start (5542s) is within the limit (174528.0s)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,787 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 16:10:41] 2025-12-17 15:09:51,794 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.0359999999987
[2025-12-17 16:10:41] 2025-12-17 15:09:51,799 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,800 | INFO     | extracted standard info from prmon json
[2025-12-17 16:10:41] 2025-12-17 15:09:51,800 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 16:10:41] 2025-12-17 15:09:51,800 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 16:10:41] 2025-12-17 15:09:51,800 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 16:10:41] 2025-12-17 15:09:51,800 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 16:10:41] 2025-12-17 15:09:51,802 | INFO     | fitting pss+swap vs Time
[2025-12-17 16:10:41] 2025-12-17 15:09:51,802 | INFO     | sum of square deviations: 183761585.0
[2025-12-17 16:10:41] 2025-12-17 15:09:51,802 | INFO     | sum of deviations: -6318162687.5
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | mean x: 1765981522.5
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | mean y: 2503037.726190476
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | intersect: 60721170447.315315
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | chi2: 0.02671346966799731
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | current memory leak: -34.38 B/s (using 84 data points, chi2=0.03)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,803 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | ..............................
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . Timing measurements:
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . get job = 0 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . initial setup = 1 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . payload setup = 10 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . stage-in = 0 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . payload execution = 5502 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . stage-out = 0 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | . log creation = 0 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,804 | INFO     | ..............................
[2025-12-17 16:10:41] 2025-12-17 15:09:51,818 | INFO     | sufficient remaining disk space (54437871616 B)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,818 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,856 | INFO     | 
[2025-12-17 16:10:41] 2025-12-17 15:09:51,857 | INFO     | job summary report
[2025-12-17 16:10:41] 2025-12-17 15:09:51,857 | INFO     | --------------------------------------------------
[2025-12-17 16:10:41] 2025-12-17 15:09:51,857 | INFO     | PanDA job id: 6931734251
[2025-12-17 16:10:41] 2025-12-17 15:09:51,857 | INFO     | task id: 47886933
[2025-12-17 16:10:41] 2025-12-17 15:09:51,857 | INFO     | errors: (none)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | pilot state: finished 
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | transexitcode: 0
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | exeerrorcode: 0
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | exeerrordiag: 
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | exitcode: 0
[2025-12-17 16:10:41] 2025-12-17 15:09:51,858 | INFO     | exitmsg: OK
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | cpuconsumptiontime: 21020 s
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | nevents: 400
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | neventsw: 0
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | pid: 282932
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | pgrp: 282932
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | corecount: 4
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | event service: False
[2025-12-17 16:10:41] 2025-12-17 15:09:51,859 | INFO     | sizes: {0: 2283979, 8: 2284241, 11: 2284269, 5516: 2310784, 5517: 2319866, 5525: 2320004}
[2025-12-17 16:10:41] 2025-12-17 15:09:51,860 | INFO     | --------------------------------------------------
[2025-12-17 16:10:41] 2025-12-17 15:09:51,860 | INFO     | 
[2025-12-17 16:10:41] 2025-12-17 15:09:51,860 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-12-17 16:10:41] 2025-12-17 15:09:51,860 | INFO     | size of work directory /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251: 2537288 B (within 2768240640 B limit)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,861 | INFO     | pfn file=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251/HITS.47886933._007999.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,861 | INFO     | total size of present files: 0 B (workdir size: 2537288 B)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,861 | INFO     | output file size check: skipping output file /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6931734251/HITS.47886933._007999.pool.root.1 since it does not exist
[2025-12-17 16:10:41] 2025-12-17 15:09:51,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,892 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 16:10:41] 2025-12-17 15:09:51,894 | INFO     | job 6931734251 has completed (purged errors)
[2025-12-17 16:10:41] 2025-12-17 15:09:51,895 | INFO     | overall cleanup function is called
[2025-12-17 16:10:41] 2025-12-17 15:09:52,093 | INFO     | number of running child processes to parent process 282932: 1
[2025-12-17 16:10:41] 2025-12-17 15:09:52,094 | INFO     | maximum number of monitored processes: 6
[2025-12-17 16:10:41] 2025-12-17 15:09:52,094 | INFO     | aborting job monitoring since job object (job id=6931734251) has expired
[2025-12-17 16:10:41] 2025-12-17 15:09:52,905 | INFO     | --- collectZombieJob: --- 10, [282932]
[2025-12-17 16:10:41] 2025-12-17 15:09:52,905 | INFO     | zombie collector waiting for pid 282932
[2025-12-17 16:10:41] 2025-12-17 15:09:52,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 16:10:41] 2025-12-17 15:09:52,905 | INFO     | collected zombie processes
[2025-12-17 16:10:41] 2025-12-17 15:09:52,905 | INFO     | will attempt to kill all subprocesses of pid=282932
[2025-12-17 16:10:41] 2025-12-17 15:09:53,115 | INFO     | process IDs to be killed: [282932] (in reverse order)
[2025-12-17 16:10:41] 2025-12-17 15:09:53,212 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 16:10:41] 2025-12-17 15:09:53,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 16:10:41] 2025-12-17 15:09:53,218 | INFO     | did not find any defunct processes belonging to 282932
[2025-12-17 16:10:41] 2025-12-17 15:09:53,223 | INFO     | did not find any defunct processes belonging to 282932
[2025-12-17 16:10:41] 2025-12-17 15:09:53,223 | INFO     | ready for new job
[2025-12-17 16:10:41] 2025-12-17 15:09:53,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 16:10:41] 2025-12-17 15:09:53,225 | INFO     | ***************************************
[2025-12-17 16:10:41] 2025-12-17 15:09:53,225 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 16:10:41] 2025-12-17 15:09:53,225 | INFO     | ***************************************
[2025-12-17 16:10:41] 2025-12-17 15:09:53,226 | INFO     | 
[2025-12-17 16:10:41] 2025-12-17 15:09:53,226 | INFO     | pilot is running in a VM
[2025-12-17 16:10:41] 2025-12-17 15:09:53,226 | INFO     | architecture information:
[2025-12-17 16:10:41] 2025-12-17 15:09:53,227 | INFO     | executing command: cat /etc/os-release
[2025-12-17 16:10:41] 2025-12-17 15:09:53,245 | INFO     | cat /etc/os-release:
[2025-12-17 16:10:41] NAME="CentOS Linux"
[2025-12-17 16:10:41] VERSION="7 (Core)"
[2025-12-17 16:10:41] ID="centos"
[2025-12-17 16:10:41] ID_LIKE="rhel fedora"
[2025-12-17 16:10:41] VERSION_ID="7"
[2025-12-17 16:10:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 16:10:41] ANSI_COLOR="0;31"
[2025-12-17 16:10:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 16:10:41] HOME_URL="https://www.centos.org/"
[2025-12-17 16:10:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 16:10:41] 
[2025-12-17 16:10:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 16:10:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 16:10:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 16:10:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 16:10:41] 
[2025-12-17 16:10:41] 2025-12-17 15:09:53,246 | INFO     | ***************************************
[2025-12-17 16:10:41] 2025-12-17 15:09:53,750 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-17 16:10:41] 2025-12-17 15:09:53,773 | INFO     | sufficient remaining disk space (54442065920 B)
[2025-12-17 16:10:41] 2025-12-17 15:09:53,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 16:10:41] 2025-12-17 15:09:53,773 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 16:10:41] 2025-12-17 15:09:53,774 | INFO     | update_server=False
[2025-12-17 16:10:41] 2025-12-17 15:09:53,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 16:10:41] 2025-12-17 15:09:53,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:10:41] 2025-12-17 15:09:53,774 | INFO     | aborting loop
[2025-12-17 16:10:41] 2025-12-17 15:09:53,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 16:10:41] 2025-12-17 15:09:54,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 16:10:41] 2025-12-17 15:09:54,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 16:10:41] 2025-12-17 15:09:54,233 | INFO     | all payload control threads have been joined
[2025-12-17 16:10:41] 2025-12-17 15:09:54,541 | INFO     | all job control threads have been joined
[2025-12-17 16:10:41] 2025-12-17 15:09:54,775 | INFO     | [job] retrieve thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:54,780 | INFO     | [job] job monitor thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:54,780 | INFO     | [job] queue monitor thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:54,806 | INFO     | all data control threads have been joined
[2025-12-17 16:10:41] 2025-12-17 15:09:55,118 | INFO     | [payload] validate_post thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,219 | INFO     | [payload] failed_post thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,239 | INFO     | [payload] control thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,547 | INFO     | [job] control thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,756 | INFO     | [job] validate thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,806 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,811 | INFO     | [data] control thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,821 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,847 | INFO     | [data] copytool_in thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:55,885 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:56,103 | INFO     | [data] copytool_out thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:09:58,134 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:10:04,214 | INFO     | job.realtimelogging is not enabled
[2025-12-17 16:10:41] 2025-12-17 15:10:05,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 16:10:41] 2025-12-17 15:10:23,727 | INFO     | PID=276268 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 16:10:41] 2025-12-17 15:10:23,727 | INFO     | .. there are 3 such processes running
[2025-12-17 16:10:41] 2025-12-17 15:10:23,728 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 16:10:41] 2025-12-17 15:10:23,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 16:10:41] 2025-12-17 15:10:23,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 16:10:41] 2025-12-17 15:10:34,309 | INFO     | [monitor] cgroup control has ended
[2025-12-17 16:10:41] 2025-12-17 15:10:35,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126949844723520)>', '<ExcThread(monitor, started 126948671997696)>']
[2025-12-17 16:10:41] 2025-12-17 15:10:35,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 16:10:41] 2025-12-17 15:10:35,787 | INFO     | [monitor] control thread has ended
[2025-12-17 16:10:41] 2025-12-17 15:10:40,761 | INFO     | all workflow threads have been joined
[2025-12-17 16:10:41] 2025-12-17 15:10:40,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 16:10:41] 2025-12-17 15:10:40,762 | INFO     | traces error code: 0
[2025-12-17 16:10:41] 2025-12-17 15:10:40,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 16:10:41] 2025-12-17 15:10:40,854 [wrapper] ==== pilot stdout END ====
[2025-12-17 16:10:41] 2025-12-17 15:10:40,860 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 16:10:41] 2025-12-17 15:10:40,867 [wrapper] pilotpid: 276268
[2025-12-17 16:10:41] 2025-12-17 15:10:40,873 [wrapper] Pilot exit status: 0
[2025-12-17 16:10:41] 2025-12-17 15:10:40,898 [wrapper] pandaids: 6931734251
[2025-12-17 16:10:41] 2025-12-17 15:10:40,973 [wrapper] cleanup supervisor_pilot  356986 276269
[2025-12-17 16:10:41] 2025-12-17 15:10:40,980 [wrapper] Test setup, not cleaning
[2025-12-17 16:10:41] 2025-12-17 15:10:40,987 [wrapper] apfmon messages muted
[2025-12-17 16:10:41] 2025-12-17 15:10:40,993 [wrapper] ==== wrapper stdout END ====
[2025-12-17 16:10:41] 2025-12-17 15:10:40,999 [wrapper] ==== wrapper stderr END ====
[2025-12-17 16:10:41]  *** Error codes and diagnostics ***
[2025-12-17 16:10:41]     "exeErrorCode": 0,
[2025-12-17 16:10:41]     "exeErrorDiag": "",
[2025-12-17 16:10:41]     "pilotErrorCode": 0,
[2025-12-17 16:10:41]     "pilotErrorDiag": "",
[2025-12-17 16:10:41]  *** Listing of results directory ***
[2025-12-17 16:10:41] insgesamt 341252
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc    579449 Dez 16 23:36 pilot3.tar.gz
[2025-12-17 16:10:41] -rwx------ 1 yeti boinc     36322 Dez 16 23:40 runpilot2-wrapper.sh
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc      5112 Dez 16 23:43 queuedata.json
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc       100 Dez 17 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 16:10:41] -rwxr-xr-x 1 yeti boinc      7986 Dez 17 14:37 run_atlas
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc       105 Dez 17 14:37 job.xml
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc    592403 Dez 17 14:37 input.tar.gz
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc 194438369 Dez 17 14:37 EVNT.47886929._000327.pool.root.1
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc     15847 Dez 17 14:37 start_atlas.sh
[2025-12-17 16:10:41] drwxrwx--x 2 yeti boinc      4096 Dez 17 14:37 shared
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc      6556 Dez 17 14:37 init_data.xml
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc         0 Dez 17 14:37 boinc_setup_complete
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc         0 Dez 17 14:37 boinc_lockfile
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc      2513 Dez 17 14:37 pandaJob.out
[2025-12-17 16:10:41] -rw------- 1 yeti boinc        52 Dez 17 14:37 setup.sh.local
[2025-12-17 16:10:41] -rw------- 1 yeti boinc    987423 Dez 17 14:37 agis_schedconf.cvmfs.json
[2025-12-17 16:10:41] -rw------- 1 yeti boinc   1516240 Dez 17 14:37 agis_ddmendpoints.agis.ALL.json
[2025-12-17 16:10:41] drwx------ 5 yeti boinc      4096 Dez 17 14:37 pilot3
[2025-12-17 16:10:41] -rw------- 1 yeti boinc 148907888 Dez 17 16:09 HITS.47886933._007999.pool.root.1
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc       529 Dez 17 16:09 boinc_task_state.xml
[2025-12-17 16:10:41] -rw------- 1 yeti boinc      1018 Dez 17 16:09 memory_monitor_summary.json
[2025-12-17 16:10:41] -rw------- 1 yeti boinc    271714 Dez 17 16:09 log.47886933._007999.job.log.tgz.1
[2025-12-17 16:10:41] -rw------- 1 yeti boinc      7726 Dez 17 16:09 heartbeat.json
[2025-12-17 16:10:41] -rw------- 1 yeti boinc        95 Dez 17 16:10 pilot_heartbeat.json
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc      8192 Dez 17 16:10 boinc_mmap_file
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc        27 Dez 17 16:10 wrapper_checkpoint.txt
[2025-12-17 16:10:41] -rw------- 1 yeti boinc      4970 Dez 17 16:10 pilotlog.txt
[2025-12-17 16:10:41] -rw------- 1 yeti boinc    816591 Dez 17 16:10 log.47886933._007999.job.log.1
[2025-12-17 16:10:41] -rw------- 1 yeti boinc       357 Dez 17 16:10 output.list
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc       620 Dez 17 16:10 runtime_log
[2025-12-17 16:10:41] -rw------- 1 yeti boinc   1105920 Dez 17 16:10 result.tar.gz
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc      9537 Dez 17 16:10 runtime_log.err
[2025-12-17 16:10:41] -rw------- 1 yeti boinc       637 Dez 17 16:10 FC5MDmstsp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzTWKDmVzf08n.diag
[2025-12-17 16:10:41] -rw-r--r-- 1 yeti boinc     22117 Dez 17 16:10 stderr.txt
[2025-12-17 16:10:41] HITS file was successfully produced:
[2025-12-17 16:10:41] -rw------- 1 yeti boinc 148907888 Dez 17 16:09 shared/HITS.pool.root.1
[2025-12-17 16:10:41]  *** Contents of shared directory: ***
[2025-12-17 16:10:41] insgesamt 336988
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc    592403 Dez 17 14:37 input.tar.gz
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc 194438369 Dez 17 14:37 ATLAS.root_0
[2025-12-17 16:10:41] -rw-r--r-- 2 yeti boinc     15847 Dez 17 14:37 start_atlas.sh
[2025-12-17 16:10:41] -rw------- 1 yeti boinc 148907888 Dez 17 16:09 HITS.pool.root.1
[2025-12-17 16:10:41] -rw------- 1 yeti boinc   1105920 Dez 17 16:10 result.tar.gz
16:10:42 (272418): run_atlas exited; CPU time 21239.653270
16:10:42 (272418): called boinc_finish(0)

</stderr_txt>
]]>

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