Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:40:17 (708120): wrapper (7.7.26015): starting
05:40:17 (708120): wrapper: running run_atlas (--nthreads 9)
[2025-12-17 05:40:17] Arguments: --nthreads 9
[2025-12-17 05:40:17] Threads: 9
[2025-12-17 05:40:17] Checking for CVMFS
[2025-12-17 05:40:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 05:40:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 05:40:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 05:40:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 05:40:17] 2.13.3.0 1173508 6300 75212 154109 3 57 20839117 37030913 1832 16776704 0 12249188 99.996 226746 35691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 05:40:17] CVMFS is ok
[2025-12-17 05:40:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 05:40:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 05:40:17] Further information can be found at the LHC@home message board.
[2025-12-17 05:40:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 05:40:17] Checking for apptainer binary...
[2025-12-17 05:40:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 05:40:17] Running /usr/bin/apptainer --version
[2025-12-17 05:40:17] apptainer version 1.4.4-1.el9
[2025-12-17 05:40:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 05:40:17] c-205-37.aglt2.org
[2025-12-17 05:40:17] apptainer works
[2025-12-17 05:40:17] Set ATHENA_PROC_NUMBER=9
[2025-12-17 05:40:17] Set ATHENA_CORE_NUMBER=9
[2025-12-17 05:40:17] Starting ATLAS job with PandaID=6931597452
[2025-12-17 05:40:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 07:09:46]  *** The last 200 lines of the pilot log: ***
[2025-12-17 07:09:46] 2025-12-17 12:09:08,039 | INFO     | adding to output.list: log.47886831._014271.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/33/log.47886831._014271.job.log.tg
[2025-12-17 07:09:46] 2025-12-17 12:09:08,040 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 07:09:46] 2025-12-17 12:09:08,040 | INFO     | summary of transferred files:
[2025-12-17 07:09:46] 2025-12-17 12:09:08,040 | INFO     |  -- lfn=log.47886831._014271.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 07:09:46] 2025-12-17 12:09:08,041 | INFO     | stage-out finished correctly
[2025-12-17 07:09:46] 2025-12-17 12:09:08,359 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 07:09:46] 2025-12-17 12:09:09,207 | INFO     | time since job start (5321s) is within the limit (174528.0s)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,760 | WARNING  | process 718260 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 07:09:46] 2025-12-17 12:09:09,760 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6931597452/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,761 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6931597452/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,762 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-17 07:09:46] 2025-12-17 12:09:09,762 | WARNING  | maxPSS not found in memory monitor output
[2025-12-17 07:09:46] 2025-12-17 12:09:09,763 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3323747 B
[2025-12-17 07:09:46] 2025-12-17 12:09:09,763 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16082 B
[2025-12-17 07:09:46] 2025-12-17 12:09:09,763 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-17 07:09:46] 2025-12-17 12:09:09,776 | INFO     | sufficient remaining disk space (41814065152 B)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,777 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,778 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6931597452: 3626154 B (within 2768240640 B limit)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,778 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6931597452/HITS.47886831._014271.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,778 | INFO     | total size of present files: 0 B (workdir size: 3626154 B)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,778 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6931597452/HITS.47886831._014271.pool.root.1 since it does not exist
[2025-12-17 07:09:46] 2025-12-17 12:09:09,787 | INFO     | job 6931597452 has state=finished
[2025-12-17 07:09:46] 2025-12-17 12:09:09,787 | INFO     | preparing for final server update for job 6931597452 in state='finished'
[2025-12-17 07:09:46] 2025-12-17 12:09:09,850 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,851 | INFO     | this job has now completed (state=finished)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,851 | INFO     | log transfer has been attempted: DONE
[2025-12-17 07:09:46] 2025-12-17 12:09:09,851 | INFO     | job 6931597452 has finished - writing final server update
[2025-12-17 07:09:46] 2025-12-17 12:09:09,852 | INFO     | total number of processed events: 400 (read)
[2025-12-17 07:09:46] 2025-12-17 12:09:09,853 | INFO     | executing command: lscpu
[2025-12-17 07:09:46] 2025-12-17 12:09:09,889 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 07:09:46] 2025-12-17 12:09:10,016 | INFO     | number of running child processes to parent process 718260: 1
[2025-12-17 07:09:46] 2025-12-17 12:09:10,016 | INFO     | maximum number of monitored processes: 6
[2025-12-17 07:09:46] 2025-12-17 12:09:11,212 | INFO     | time since job start (5323s) is within the limit (174528.0s)
[2025-12-17 07:09:46] 2025-12-17 12:09:12,519 | INFO     | monitor loop #400: job 0:6931597452 is in state 'finished'
[2025-12-17 07:09:46] 2025-12-17 12:09:12,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,217 | INFO     | time since job start (5325s) is within the limit (174528.0s)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,274 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 07:09:46] 2025-12-17 12:09:13,280 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2693.955374999999
[2025-12-17 07:09:46] 2025-12-17 12:09:13,287 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6931597452/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,287 | INFO     | extracted standard info from prmon json
[2025-12-17 07:09:46] 2025-12-17 12:09:13,287 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 07:09:46] 2025-12-17 12:09:13,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 07:09:46] 2025-12-17 12:09:13,288 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 07:09:46] 2025-12-17 12:09:13,288 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 07:09:46] 2025-12-17 12:09:13,290 | INFO     | fitting pss+swap vs Time
[2025-12-17 07:09:46] 2025-12-17 12:09:13,291 | INFO     | sum of square deviations: 158737860.0
[2025-12-17 07:09:46] 2025-12-17 12:09:13,291 | INFO     | sum of deviations: -11940605155.499996
[2025-12-17 07:09:46] 2025-12-17 12:09:13,291 | INFO     | mean x: 1765970765.5
[2025-12-17 07:09:46] 2025-12-17 12:09:13,291 | INFO     | mean y: 2656430.7875
[2025-12-17 07:09:46] 2025-12-17 12:09:13,292 | INFO     | intersect: 132842796942.89706
[2025-12-17 07:09:46] 2025-12-17 12:09:13,292 | INFO     | chi2: 0.06263614609902701
[2025-12-17 07:09:46] 2025-12-17 12:09:13,292 | INFO     | current memory leak: -75.22 B/s (using 80 data points, chi2=0.06)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | could have reported an average CPU frequency of 2653 MHz (6 samples)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | ..............................
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | . Timing measurements:
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | . get job = 0 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | . initial setup = 2 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,293 | INFO     | . payload setup = 5 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,294 | INFO     | . stage-in = 0 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,294 | INFO     | . payload execution = 5294 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,294 | INFO     | . stage-out = 0 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,294 | INFO     | . log creation = 0 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,294 | INFO     | ..............................
[2025-12-17 07:09:46] 2025-12-17 12:09:13,401 | INFO     | 
[2025-12-17 07:09:46] 2025-12-17 12:09:13,401 | INFO     | job summary report
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | --------------------------------------------------
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | PanDA job id: 6931597452
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | task id: 47886831
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | errors: (none)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | pilot state: finished 
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | transexitcode: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:13,402 | INFO     | exeerrorcode: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | exeerrordiag: 
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | exitcode: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | exitmsg: OK
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | cpuconsumptiontime: 44043 s
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | nevents: 400
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | neventsw: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | pid: 718260
[2025-12-17 07:09:46] 2025-12-17 12:09:13,403 | INFO     | pgrp: 718260
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | corecount: 9
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | event service: False
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | sizes: {0: 2283879, 1: 2284021, 4: 2284283, 11: 2284311, 5304: 2310898, 5306: 2320080, 5311: 2320246}
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | --------------------------------------------------
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | 
[2025-12-17 07:09:46] 2025-12-17 12:09:13,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-17 07:09:46] 2025-12-17 12:09:13,420 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 07:09:46] 2025-12-17 12:09:13,423 | INFO     | job 6931597452 has completed (purged errors)
[2025-12-17 07:09:46] 2025-12-17 12:09:13,424 | INFO     | overall cleanup function is called
[2025-12-17 07:09:46] 2025-12-17 12:09:14,432 | INFO     | --- collectZombieJob: --- 10, [718260]
[2025-12-17 07:09:46] 2025-12-17 12:09:14,432 | INFO     | zombie collector waiting for pid 718260
[2025-12-17 07:09:46] 2025-12-17 12:09:14,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 07:09:46] 2025-12-17 12:09:14,432 | INFO     | collected zombie processes
[2025-12-17 07:09:46] 2025-12-17 12:09:14,433 | INFO     | will attempt to kill all subprocesses of pid=718260
[2025-12-17 07:09:46] 2025-12-17 12:09:14,626 | INFO     | process IDs to be killed: [718260] (in reverse order)
[2025-12-17 07:09:46] 2025-12-17 12:09:14,681 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 07:09:46] 2025-12-17 12:09:14,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 07:09:46] 2025-12-17 12:09:14,686 | INFO     | did not find any defunct processes belonging to 718260
[2025-12-17 07:09:46] 2025-12-17 12:09:14,691 | INFO     | did not find any defunct processes belonging to 718260
[2025-12-17 07:09:46] 2025-12-17 12:09:14,691 | INFO     | ready for new job
[2025-12-17 07:09:46] 2025-12-17 12:09:14,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 07:09:46] 2025-12-17 12:09:14,693 | INFO     | ***************************************
[2025-12-17 07:09:46] 2025-12-17 12:09:14,693 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 07:09:46] 2025-12-17 12:09:14,693 | INFO     | ***************************************
[2025-12-17 07:09:46] 2025-12-17 12:09:14,693 | INFO     | 
[2025-12-17 07:09:46] 2025-12-17 12:09:14,695 | INFO     | architecture information:
[2025-12-17 07:09:46] 2025-12-17 12:09:14,696 | INFO     | executing command: cat /etc/os-release
[2025-12-17 07:09:46] 2025-12-17 12:09:14,707 | INFO     | cat /etc/os-release:
[2025-12-17 07:09:46] NAME="CentOS Linux"
[2025-12-17 07:09:46] VERSION="7 (Core)"
[2025-12-17 07:09:46] ID="centos"
[2025-12-17 07:09:46] ID_LIKE="rhel fedora"
[2025-12-17 07:09:46] VERSION_ID="7"
[2025-12-17 07:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 07:09:46] ANSI_COLOR="0;31"
[2025-12-17 07:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 07:09:46] HOME_URL="https://www.centos.org/"
[2025-12-17 07:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 07:09:46] 
[2025-12-17 07:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 07:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 07:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 07:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 07:09:46] 
[2025-12-17 07:09:46] 2025-12-17 12:09:14,708 | INFO     | ***************************************
[2025-12-17 07:09:46] 2025-12-17 12:09:15,210 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | INFO     | sufficient remaining disk space (41815113728 B)
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | INFO     | update_server=False
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 07:09:46] 2025-12-17 12:09:15,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 07:09:46] 2025-12-17 12:09:15,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 07:09:46] 2025-12-17 12:09:15,553 | INFO     | all data control threads have been joined
[2025-12-17 07:09:46] 2025-12-17 12:09:15,819 | INFO     | all payload control threads have been joined
[2025-12-17 07:09:46] 2025-12-17 12:09:16,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 07:09:46] 2025-12-17 12:09:16,027 | INFO     | aborting loop
[2025-12-17 07:09:46] 2025-12-17 12:09:16,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 07:09:46] 2025-12-17 12:09:16,231 | INFO     | [job] retrieve thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,232 | INFO     | [job] queue monitor thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,293 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,558 | INFO     | [data] control thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,694 | INFO     | [payload] validate_post thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,824 | INFO     | [payload] control thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:16,922 | INFO     | all job control threads have been joined
[2025-12-17 07:09:46] 2025-12-17 12:09:17,002 | INFO     | [data] copytool_in thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,033 | INFO     | [job] job monitor thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,289 | INFO     | [job] validate thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,309 | INFO     | [payload] failed_post thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,461 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,600 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:17,924 | INFO     | [job] control thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:18,163 | INFO     | [data] copytool_out thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:19,233 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:26,081 | INFO     | job.realtimelogging is not enabled
[2025-12-17 07:09:46] 2025-12-17 12:09:27,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 07:09:46] 2025-12-17 12:09:35,351 | INFO     | [monitor] cgroup control has ended
[2025-12-17 07:09:46] 2025-12-17 12:09:35,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708424759104)>', '<ExcThread(monitor, started 139707937699584)>']
[2025-12-17 07:09:46] 2025-12-17 12:09:40,858 | INFO     | all workflow threads have been joined
[2025-12-17 07:09:46] 2025-12-17 12:09:40,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 07:09:46] 2025-12-17 12:09:40,858 | INFO     | traces error code: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:40,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 07:09:46] 2025-12-17 12:09:46,526 | INFO     | PID=711818 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 07:09:46] 2025-12-17 12:09:46,526 | INFO     | .. there are 3 such processes running
[2025-12-17 07:09:46] 2025-12-17 12:09:46,527 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 07:09:46] 2025-12-17 12:09:46,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 07:09:46] 2025-12-17 12:09:46,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 07:09:46] 2025-12-17 12:09:46,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 07:09:46] 2025-12-17 12:09:46,528 | INFO     | [monitor] control thread has ended
[2025-12-17 07:09:46] 2025-12-17 12:09:46,642 [wrapper] ==== pilot stdout END ====
[2025-12-17 07:09:46] 2025-12-17 12:09:46,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 07:09:46] 2025-12-17 12:09:46,647 [wrapper] pilotpid: 711818
[2025-12-17 07:09:46] 2025-12-17 12:09:46,649 [wrapper] Pilot exit status: 0
[2025-12-17 07:09:46] 2025-12-17 12:09:46,658 [wrapper] pandaids: 6931597452
[2025-12-17 07:09:46] 2025-12-17 12:09:46,695 [wrapper] cleanup supervisor_pilot  918174 711819
[2025-12-17 07:09:46] 2025-12-17 12:09:46,698 [wrapper] Test setup, not cleaning
[2025-12-17 07:09:46] 2025-12-17 12:09:46,700 [wrapper] apfmon messages muted
[2025-12-17 07:09:46] 2025-12-17 12:09:46,702 [wrapper] ==== wrapper stdout END ====
[2025-12-17 07:09:46] 2025-12-17 12:09:46,705 [wrapper] ==== wrapper stderr END ====
[2025-12-17 07:09:46]  *** Error codes and diagnostics ***
[2025-12-17 07:09:46]     "exeErrorCode": 0,
[2025-12-17 07:09:46]     "exeErrorDiag": "",
[2025-12-17 07:09:46]     "pilotErrorCode": 0,
[2025-12-17 07:09:46]     "pilotErrorDiag": "",
[2025-12-17 07:09:46]  *** Listing of results directory ***
[2025-12-17 07:09:46] total 339100
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 12:35 queuedata.json
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 12:35 pilot3.tar.gz
[2025-12-17 07:09:46] -rwx------. 1 boincer umatlas     36322 Dec 16 12:35 runpilot2-wrapper.sh
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas       100 Dec 17 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 07:09:46] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 17 05:40 run_atlas
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas       105 Dec 17 05:40 job.xml
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas 190461620 Dec 17 05:40 EVNT.47886829._000505.pool.root.1
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 05:40 start_atlas.sh
[2025-12-17 07:09:46] drwxrwx--x. 2 boincer umatlas      4096 Dec 17 05:40 shared
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas    592410 Dec 17 05:40 input.tar.gz
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas         0 Dec 17 05:40 boinc_lockfile
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas      2539 Dec 17 05:40 pandaJob.out
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas    987423 Dec 17 05:40 agis_schedconf.cvmfs.json
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas   1516240 Dec 17 05:40 agis_ddmendpoints.agis.ALL.json
[2025-12-17 07:09:46] drwx------. 5 boincer umatlas      4096 Dec 17 05:40 pilot3
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas      6530 Dec 17 07:01 init_data.xml
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas 150613224 Dec 17 07:08 HITS.47886831._014271.pool.root.1
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas       529 Dec 17 07:08 boinc_task_state.xml
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas      1032 Dec 17 07:09 memory_monitor_summary.json
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas    346529 Dec 17 07:09 log.47886831._014271.job.log.tgz.1
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas      7813 Dec 17 07:09 heartbeat.json
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas      8192 Dec 17 07:09 boinc_mmap_file
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas        27 Dec 17 07:09 wrapper_checkpoint.txt
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas        95 Dec 17 07:09 pilot_heartbeat.json
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas       821 Dec 17 07:09 pilotlog.txt
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas    784776 Dec 17 07:09 log.47886831._014271.job.log.1
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas       357 Dec 17 07:09 output.list
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas       620 Dec 17 07:09 runtime_log
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas   1146880 Dec 17 07:09 result.tar.gz
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas      8817 Dec 17 07:09 runtime_log.err
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas       650 Dec 17 07:09 Je6KDms8np8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZsVKDmylUb2m.diag
[2025-12-17 07:09:46] -rw-r--r--. 1 boincer umatlas     22559 Dec 17 07:09 stderr.txt
[2025-12-17 07:09:46] HITS file was successfully produced:
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas 150613224 Dec 17 07:08 shared/HITS.pool.root.1
[2025-12-17 07:09:46]  *** Contents of shared directory: ***
[2025-12-17 07:09:46] total 334804
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas 190461620 Dec 17 05:40 ATLAS.root_0
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas     15847 Dec 17 05:40 start_atlas.sh
[2025-12-17 07:09:46] -rw-r--r--. 2 boincer umatlas    592410 Dec 17 05:40 input.tar.gz
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas 150613224 Dec 17 07:08 HITS.pool.root.1
[2025-12-17 07:09:46] -rw-------. 1 boincer umatlas   1146880 Dec 17 07:09 result.tar.gz
07:09:48 (708120): run_atlas exited; CPU time 44157.195411
07:09:48 (708120): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN