Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:03:28 (1714143): wrapper (7.7.26015): starting
00:03:28 (1714143): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 00:03:28] Arguments: --nthreads 3
[2025-12-18 00:03:28] Threads: 3
[2025-12-18 00:03:28] Checking for CVMFS
[2025-12-18 00:03:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 00:03:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 00:03:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 00:03:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 00:03:28] 2.9.2.0 19183 6835 69700 154125 3 57 32242379 36864001 0 130560 0 4469044 99.989 249070 7826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 00:03:28] CVMFS is ok
[2025-12-18 00:03:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 00:03:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 00:03:28] Further information can be found at the LHC@home message board.
[2025-12-18 00:03:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 00:03:28] Checking for apptainer binary...
[2025-12-18 00:03:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 00:03:28] Running /usr/bin/apptainer --version
[2025-12-18 00:03:28] apptainer version 1.4.1-1.1
[2025-12-18 00:03:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 00:03:29] magicA244b
[2025-12-18 00:03:29] apptainer works
[2025-12-18 00:03:29] Set ATHENA_PROC_NUMBER=3
[2025-12-18 00:03:29] Set ATHENA_CORE_NUMBER=3
[2025-12-18 00:03:29] Starting ATLAS job with PandaID=6931731574
[2025-12-18 00:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 01:39:52]  *** The last 200 lines of the pilot log: ***
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | job 6931731574 has completed (purged errors)
[2025-12-18 01:39:52] 2025-12-18 00:39:09,913 | INFO     | overall cleanup function is called
[2025-12-18 01:39:52] 2025-12-18 00:39:10,919 | INFO     | --- collectZombieJob: --- 10, [1724344]
[2025-12-18 01:39:52] 2025-12-18 00:39:10,919 | INFO     | zombie collector waiting for pid 1724344
[2025-12-18 01:39:52] 2025-12-18 00:39:10,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 01:39:52] 2025-12-18 00:39:10,920 | INFO     | collected zombie processes
[2025-12-18 01:39:52] 2025-12-18 00:39:10,920 | INFO     | will attempt to kill all subprocesses of pid=1724344
[2025-12-18 01:39:52] 2025-12-18 00:39:10,957 | INFO     | process IDs to be killed: [1724344] (in reverse order)
[2025-12-18 01:39:52] 2025-12-18 00:39:10,982 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 01:39:52] 2025-12-18 00:39:10,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 01:39:52] 2025-12-18 00:39:10,983 | INFO     | did not find any defunct processes belonging to 1724344
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | did not find any defunct processes belonging to 1724344
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | ready for new job
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | ***************************************
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | ***************************************
[2025-12-18 01:39:52] 2025-12-18 00:39:10,984 | INFO     | 
[2025-12-18 01:39:52] 2025-12-18 00:39:10,985 | INFO     | architecture information:
[2025-12-18 01:39:52] 2025-12-18 00:39:10,985 | INFO     | executing command: cat /etc/os-release
[2025-12-18 01:39:52] 2025-12-18 00:39:10,994 | INFO     | cat /etc/os-release:
[2025-12-18 01:39:52] NAME="CentOS Linux"
[2025-12-18 01:39:52] VERSION="7 (Core)"
[2025-12-18 01:39:52] ID="centos"
[2025-12-18 01:39:52] ID_LIKE="rhel fedora"
[2025-12-18 01:39:52] VERSION_ID="7"
[2025-12-18 01:39:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 01:39:52] ANSI_COLOR="0;31"
[2025-12-18 01:39:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 01:39:52] HOME_URL="https://www.centos.org/"
[2025-12-18 01:39:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 01:39:52] 
[2025-12-18 01:39:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 01:39:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 01:39:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 01:39:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 01:39:52] 
[2025-12-18 01:39:52] 2025-12-18 00:39:10,994 | INFO     | ***************************************
[2025-12-18 01:39:52] 2025-12-18 00:39:11,497 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | INFO     | sufficient remaining disk space (328137179136 B)
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | INFO     | update_server=False
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | INFO     | aborting loop
[2025-12-18 01:39:52] 2025-12-18 00:39:11,510 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 01:39:52] 2025-12-18 00:39:11,511 | INFO     | all job control threads have been joined
[2025-12-18 01:39:52] 2025-12-18 00:39:11,931 | INFO     | all payload control threads have been joined
[2025-12-18 01:39:52] 2025-12-18 00:39:12,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 01:39:52] 2025-12-18 00:39:12,416 | INFO     | all data control threads have been joined
[2025-12-18 01:39:52] 2025-12-18 00:39:12,515 | INFO     | [job] queue monitor thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:12,516 | INFO     | [job] control thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:12,517 | INFO     | [job] job monitor thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:12,518 | INFO     | [job] retrieve thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:12,803 | INFO     | [payload] validate_post thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:12,936 | INFO     | [payload] control thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,145 | INFO     | [data] copytool_in thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,204 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,422 | INFO     | [data] control thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,531 | INFO     | [job] validate thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,753 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,846 | INFO     | [payload] failed_post thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:13,995 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:14,094 | INFO     | [data] copytool_out thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:14,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 01:39:52] 2025-12-18 00:39:18,622 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:22,463 | INFO     | job.realtimelogging is not enabled
[2025-12-18 01:39:52] 2025-12-18 00:39:23,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 01:39:52] 2025-12-18 00:39:42,303 | INFO     | PID=1717892 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 01:39:52] 2025-12-18 00:39:42,303 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 01:39:52] 2025-12-18 00:39:42,303 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 01:39:52] 2025-12-18 00:39:42,303 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 01:39:52] 2025-12-18 00:39:46,635 | INFO     | [monitor] cgroup control has ended
[2025-12-18 01:39:52] 2025-12-18 00:39:47,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491775629120)>', '<ExcThread(monitor, started 140490913601280)>']
[2025-12-18 01:39:52] 2025-12-18 00:39:47,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 01:39:52] 2025-12-18 00:39:47,330 | INFO     | [monitor] control thread has ended
[2025-12-18 01:39:52] 2025-12-18 00:39:52,106 | INFO     | all workflow threads have been joined
[2025-12-18 01:39:52] 2025-12-18 00:39:52,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 01:39:52] 2025-12-18 00:39:52,107 | INFO     | traces error code: 0
[2025-12-18 01:39:52] 2025-12-18 00:39:52,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 01:39:52] 2025-12-18 00:39:52,149 [wrapper] ==== pilot stdout END ====
[2025-12-18 01:39:52] 2025-12-18 00:39:52,152 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 01:39:52] 2025-12-18 00:39:52,155 [wrapper] pilotpid: 1717892
[2025-12-18 01:39:52] 2025-12-18 00:39:52,158 [wrapper] Pilot exit status: 0
[2025-12-18 01:39:52] 2025-12-18 00:39:52,166 [wrapper] pandaids: 6931731574
[2025-12-18 01:39:52] 2025-12-18 00:39:52,182 [wrapper] cleanup supervisor_pilot 1736682 1717893
[2025-12-18 01:39:52] 2025-12-18 00:39:52,185 [wrapper] Test setup, not cleaning
[2025-12-18 01:39:52] 2025-12-18 00:39:52,187 [wrapper] apfmon messages muted
[2025-12-18 01:39:52] 2025-12-18 00:39:52,190 [wrapper] ==== wrapper stdout END ====
[2025-12-18 01:39:52] 2025-12-18 00:39:52,192 [wrapper] ==== wrapper stderr END ====
[2025-12-18 01:39:52]  *** Error codes and diagnostics ***
[2025-12-18 01:39:52]     "exeErrorCode": 0,
[2025-12-18 01:39:52]     "exeErrorDiag": "",
[2025-12-18 01:39:52]     "pilotErrorCode": 0,
[2025-12-18 01:39:52]     "pilotErrorDiag": "",
[2025-12-18 01:39:52]  *** Listing of results directory ***
[2025-12-18 01:39:52] total 335528
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc    579449 Dec 16 23:36 pilot3.tar.gz
[2025-12-18 01:39:52] -rwx------ 1 boinc boinc     36322 Dec 16 23:39 runpilot2-wrapper.sh
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc      5112 Dec 16 23:42 queuedata.json
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc       100 Dec 18 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 01:39:52] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 00:03 run_atlas
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc       105 Dec 18 00:03 job.xml
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc 190716500 Dec 18 00:03 EVNT.47886829._000309.pool.root.1
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc    592425 Dec 18 00:03 input.tar.gz
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc     15847 Dec 18 00:03 start_atlas.sh
[2025-12-18 01:39:52] drwxrwx--x 2 boinc boinc      4096 Dec 18 00:03 shared
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc         0 Dec 18 00:03 boinc_setup_complete
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc      6199 Dec 18 00:03 init_data.xml
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc         0 Dec 18 00:03 boinc_lockfile
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc      2538 Dec 18 00:03 pandaJob.out
[2025-12-18 01:39:52] -rw------- 1 boinc boinc    988134 Dec 18 00:03 agis_schedconf.cvmfs.json
[2025-12-18 01:39:52] -rw------- 1 boinc boinc   1516240 Dec 18 00:03 agis_ddmendpoints.agis.ALL.json
[2025-12-18 01:39:52] drwx------ 5 boinc boinc      4096 Dec 18 00:03 pilot3
[2025-12-18 01:39:52] -rw------- 1 boinc boinc 146770815 Dec 18 01:38 HITS.47886831._015354.pool.root.1
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc       529 Dec 18 01:38 boinc_task_state.xml
[2025-12-18 01:39:52] -rw------- 1 boinc boinc      1012 Dec 18 01:39 memory_monitor_summary.json
[2025-12-18 01:39:52] -rw------- 1 boinc boinc    258399 Dec 18 01:39 log.47886831._015354.job.log.tgz.1
[2025-12-18 01:39:52] -rw------- 1 boinc boinc        95 Dec 18 01:39 pilot_heartbeat.json
[2025-12-18 01:39:52] -rw------- 1 boinc boinc      7753 Dec 18 01:39 heartbeat.json
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc      8192 Dec 18 01:39 boinc_mmap_file
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc        27 Dec 18 01:39 wrapper_checkpoint.txt
[2025-12-18 01:39:52] -rw------- 1 boinc boinc      4824 Dec 18 01:39 pilotlog.txt
[2025-12-18 01:39:52] -rw------- 1 boinc boinc    834423 Dec 18 01:39 log.47886831._015354.job.log.1
[2025-12-18 01:39:52] -rw------- 1 boinc boinc       357 Dec 18 01:39 output.list
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc       620 Dec 18 01:39 runtime_log
[2025-12-18 01:39:52] -rw------- 1 boinc boinc   1116160 Dec 18 01:39 result.tar.gz
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc      8917 Dec 18 01:39 runtime_log.err
[2025-12-18 01:39:52] -rw------- 1 boinc boinc       662 Dec 18 01:39 fGHODmtssp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtPWKDmgvv0Ro.diag
[2025-12-18 01:39:52] -rw-r--r-- 1 boinc boinc     12131 Dec 18 01:39 stderr.txt
[2025-12-18 01:39:52] HITS file was successfully produced:
[2025-12-18 01:39:52] -rw------- 1 boinc boinc 146770815 Dec 18 01:38 shared/HITS.pool.root.1
[2025-12-18 01:39:52]  *** Contents of shared directory: ***
[2025-12-18 01:39:52] total 331276
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc 190716500 Dec 18 00:03 ATLAS.root_0
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc    592425 Dec 18 00:03 input.tar.gz
[2025-12-18 01:39:52] -rw-r--r-- 2 boinc boinc     15847 Dec 18 00:03 start_atlas.sh
[2025-12-18 01:39:52] -rw------- 1 boinc boinc 146770815 Dec 18 01:38 HITS.pool.root.1
[2025-12-18 01:39:52] -rw------- 1 boinc boinc   1116160 Dec 18 01:39 result.tar.gz
01:39:53 (1714143): run_atlas exited; CPU time 16441.121739
01:39:53 (1714143): called boinc_finish(0)

</stderr_txt>
]]>

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