Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:40:22 (24989): wrapper (7.7.26015): starting
04:40:22 (24989): wrapper: running run_atlas (--nthreads 12)
[2025-12-17 04:40:22] Arguments: --nthreads 12
[2025-12-17 04:40:22] Threads: 12
[2025-12-17 04:40:22] Checking for CVMFS
[2025-12-17 04:40:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 04:40:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 04:40:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 04:40:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 04:40:23] 2.11.2.0 2998 133467 94472 154106 0 59 14060838 20275200 1 130560 0 57559433 99.958 5880965 35562 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-17 04:40:23] CVMFS is ok
[2025-12-17 04:40:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 04:40:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 04:40:23] Further information can be found at the LHC@home message board.
[2025-12-17 04:40:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 04:40:23] Checking for apptainer binary...
[2025-12-17 04:40:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 04:40:23] Running /usr/bin/apptainer --version
[2025-12-17 04:40:23] apptainer version 1.3.2-1.el7
[2025-12-17 04:40:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 04:40:24] c-205-12.aglt2.org
[2025-12-17 04:40:24] apptainer works
[2025-12-17 04:40:24] Set ATHENA_PROC_NUMBER=12
[2025-12-17 04:40:24] Set ATHENA_CORE_NUMBER=12
[2025-12-17 04:40:24] Starting ATLAS job with PandaID=6931734119
[2025-12-17 04:40:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 05:59:54]  *** The last 200 lines of the pilot log: ***
[2025-12-17 05:59:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931734119/log.47886933._007867.job.log.tgz.1
[2025-12-17 05:59:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/c2/log.47886933._007867.job.log.tgz.1
[2025-12-17 05:59:54]  workdir=None
[2025-12-17 05:59:54] ]
[2025-12-17 05:59:54] 2025-12-17 10:59:04,333 | INFO     | transferring file log.47886933._007867.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931734119/log.47886933._007867.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-17 05:59:54] 2025-12-17 10:59:04,333 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931734119/log.47886933._007867.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._007867.job
[2025-12-17 05:59:54] 2025-12-17 10:59:04,354 | INFO     | adding to output.list: log.47886933._007867.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/c2/log.47886933._007867.job.log.tg
[2025-12-17 05:59:54] 2025-12-17 10:59:04,354 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 05:59:54] 2025-12-17 10:59:04,354 | INFO     | summary of transferred files:
[2025-12-17 05:59:54] 2025-12-17 10:59:04,355 | INFO     |  -- lfn=log.47886933._007867.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 05:59:54] 2025-12-17 10:59:04,355 | INFO     | stage-out finished correctly
[2025-12-17 05:59:54] 2025-12-17 10:59:04,441 | WARNING  | process 2784 can no longer be monitored (due to stat problems) - aborting
[2025-12-17 05:59:54] 2025-12-17 10:59:04,442 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931734119/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 05:59:54] 2025-12-17 10:59:04,555 | INFO     | number of running child processes to parent process 2784: 1
[2025-12-17 05:59:54] 2025-12-17 10:59:04,555 | INFO     | maximum number of monitored processes: 6
[2025-12-17 05:59:54] 2025-12-17 10:59:04,632 | INFO     | PID=28673 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-17 05:59:54] 2025-12-17 10:59:05,624 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 05:59:54] 2025-12-17 10:59:05,638 | INFO     | time since job start (4706s) is within the limit (174528.0s)
[2025-12-17 05:59:54] 2025-12-17 10:59:06,764 | INFO     | job 6931734119 has state=finished
[2025-12-17 05:59:54] 2025-12-17 10:59:06,764 | INFO     | preparing for final server update for job 6931734119 in state='finished'
[2025-12-17 05:59:54] 2025-12-17 10:59:06,771 | INFO     | this job has now completed (state=finished)
[2025-12-17 05:59:54] 2025-12-17 10:59:06,771 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 05:59:54] 2025-12-17 10:59:06,771 | INFO     | log transfer has been attempted: DONE
[2025-12-17 05:59:54] 2025-12-17 10:59:06,772 | INFO     | job 6931734119 has finished - writing final server update
[2025-12-17 05:59:54] 2025-12-17 10:59:06,772 | INFO     | total number of processed events: 400 (read)
[2025-12-17 05:59:54] 2025-12-17 10:59:06,773 | INFO     | executing command: lscpu
[2025-12-17 05:59:54] 2025-12-17 10:59:06,797 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 05:59:54] 2025-12-17 10:59:07,058 | INFO     | monitor loop #352: job 0:6931734119 is in state 'finished'
[2025-12-17 05:59:54] 2025-12-17 10:59:07,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 05:59:54] 2025-12-17 10:59:07,649 | INFO     | time since job start (4708s) is within the limit (174528.0s)
[2025-12-17 05:59:54] 2025-12-17 10:59:09,562 | INFO     | monitor loop #353: job 0:6931734119 is in state 'finished'
[2025-12-17 05:59:54] 2025-12-17 10:59:09,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 05:59:54] 2025-12-17 10:59:09,654 | INFO     | time since job start (4710s) is within the limit (174528.0s)
[2025-12-17 05:59:54] 2025-12-17 10:59:11,659 | INFO     | time since job start (4712s) is within the limit (174528.0s)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,065 | INFO     | monitor loop #354: job 0:6931734119 is in state 'finished'
[2025-12-17 05:59:54] 2025-12-17 10:59:12,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,628 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-17 05:59:54] 2025-12-17 10:59:12,632 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-17 05:59:54] 2025-12-17 10:59:12,633 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931734119/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,634 | INFO     | extracted standard info from prmon json
[2025-12-17 05:59:54] 2025-12-17 10:59:12,634 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 05:59:54] 2025-12-17 10:59:12,634 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 05:59:54] 2025-12-17 10:59:12,634 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 05:59:54] 2025-12-17 10:59:12,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 05:59:54] 2025-12-17 10:59:12,636 | INFO     | fitting pss+swap vs Time
[2025-12-17 05:59:54] 2025-12-17 10:59:12,636 | INFO     | sum of square deviations: 106336877.5
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | sum of deviations: 197968118.99999997
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | mean x: 1765966877.5
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | mean y: 2672086.1714285715
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | intersect: -3285040974.1916456
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | chi2: 0.015593070619522906
[2025-12-17 05:59:54] 2025-12-17 10:59:12,637 | INFO     | current memory leak: 1.86 B/s (using 70 data points, chi2=0.02)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | ..............................
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | . Timing measurements:
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | . get job = 0 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | . initial setup = 2 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | . payload setup = 7 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,638 | INFO     | . stage-in = 0 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,639 | INFO     | . payload execution = 4677 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,639 | INFO     | . stage-out = 0 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,639 | INFO     | . log creation = 0 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,639 | INFO     | ..............................
[2025-12-17 05:59:54] 2025-12-17 10:59:12,719 | INFO     | 
[2025-12-17 05:59:54] 2025-12-17 10:59:12,719 | INFO     | job summary report
[2025-12-17 05:59:54] 2025-12-17 10:59:12,719 | INFO     | --------------------------------------------------
[2025-12-17 05:59:54] 2025-12-17 10:59:12,719 | INFO     | PanDA job id: 6931734119
[2025-12-17 05:59:54] 2025-12-17 10:59:12,719 | INFO     | task id: 47886933
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | errors: (none)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | pilot state: finished 
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | transexitcode: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | exeerrorcode: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | exeerrordiag: 
[2025-12-17 05:59:54] 2025-12-17 10:59:12,720 | INFO     | exitcode: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | exitmsg: OK
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | cpuconsumptiontime: 50714 s
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | nevents: 400
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | neventsw: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | pid: 2784
[2025-12-17 05:59:54] 2025-12-17 10:59:12,721 | INFO     | pgrp: 2784
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | corecount: 12
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | event service: False
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | sizes: {0: 2283963, 5: 2284225, 11: 2284281, 4688: 2310430, 4689: 2319428, 4690: 2319484, 4697: 2319806}
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | --------------------------------------------------
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | 
[2025-12-17 05:59:54] 2025-12-17 10:59:12,722 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-17 05:59:54] 2025-12-17 10:59:12,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 05:59:54] 2025-12-17 10:59:12,750 | INFO     | job 6931734119 has completed (purged errors)
[2025-12-17 05:59:54] 2025-12-17 10:59:12,750 | INFO     | overall cleanup function is called
[2025-12-17 05:59:54] 2025-12-17 10:59:13,755 | INFO     | --- collectZombieJob: --- 10, [2784]
[2025-12-17 05:59:54] 2025-12-17 10:59:13,755 | INFO     | zombie collector waiting for pid 2784
[2025-12-17 05:59:54] 2025-12-17 10:59:13,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 05:59:54] 2025-12-17 10:59:13,755 | INFO     | collected zombie processes
[2025-12-17 05:59:54] 2025-12-17 10:59:13,755 | INFO     | will attempt to kill all subprocesses of pid=2784
[2025-12-17 05:59:54] 2025-12-17 10:59:13,847 | INFO     | process IDs to be killed: [2784] (in reverse order)
[2025-12-17 05:59:54] 2025-12-17 10:59:13,898 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 05:59:54] 2025-12-17 10:59:13,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 05:59:54] 2025-12-17 10:59:13,902 | INFO     | did not find any defunct processes belonging to 2784
[2025-12-17 05:59:54] 2025-12-17 10:59:13,905 | INFO     | did not find any defunct processes belonging to 2784
[2025-12-17 05:59:54] 2025-12-17 10:59:13,905 | INFO     | ready for new job
[2025-12-17 05:59:54] 2025-12-17 10:59:13,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 05:59:54] 2025-12-17 10:59:13,907 | INFO     | ***************************************
[2025-12-17 05:59:54] 2025-12-17 10:59:13,907 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 05:59:54] 2025-12-17 10:59:13,907 | INFO     | ***************************************
[2025-12-17 05:59:54] 2025-12-17 10:59:13,907 | INFO     | 
[2025-12-17 05:59:54] 2025-12-17 10:59:13,908 | INFO     | architecture information:
[2025-12-17 05:59:54] 2025-12-17 10:59:13,909 | INFO     | executing command: cat /etc/os-release
[2025-12-17 05:59:54] 2025-12-17 10:59:13,923 | INFO     | cat /etc/os-release:
[2025-12-17 05:59:54] NAME="CentOS Linux"
[2025-12-17 05:59:54] VERSION="7 (Core)"
[2025-12-17 05:59:54] ID="centos"
[2025-12-17 05:59:54] ID_LIKE="rhel fedora"
[2025-12-17 05:59:54] VERSION_ID="7"
[2025-12-17 05:59:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 05:59:54] ANSI_COLOR="0;31"
[2025-12-17 05:59:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 05:59:54] HOME_URL="https://www.centos.org/"
[2025-12-17 05:59:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 05:59:54] 
[2025-12-17 05:59:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 05:59:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 05:59:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 05:59:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 05:59:54] 
[2025-12-17 05:59:54] 2025-12-17 10:59:13,923 | INFO     | ***************************************
[2025-12-17 05:59:54] 2025-12-17 10:59:14,426 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-17 05:59:54] 2025-12-17 10:59:14,443 | INFO     | sufficient remaining disk space (29450305536 B)
[2025-12-17 05:59:54] 2025-12-17 10:59:14,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 05:59:54] 2025-12-17 10:59:14,444 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 05:59:54] 2025-12-17 10:59:14,444 | INFO     | update_server=False
[2025-12-17 05:59:54] 2025-12-17 10:59:14,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 05:59:54] 2025-12-17 10:59:14,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 05:59:54] 2025-12-17 10:59:14,453 | INFO     | all payload control threads have been joined
[2025-12-17 05:59:54] 2025-12-17 10:59:14,568 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 05:59:54] 2025-12-17 10:59:14,569 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 05:59:54] 2025-12-17 10:59:14,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 05:59:54] 2025-12-17 10:59:14,569 | INFO     | will abort loop
[2025-12-17 05:59:54] 2025-12-17 10:59:14,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 05:59:54] 2025-12-17 10:59:15,281 | INFO     | all data control threads have been joined
[2025-12-17 05:59:54] 2025-12-17 10:59:15,450 | INFO     | [job] retrieve thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,451 | INFO     | [job] queue monitor thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,457 | INFO     | [payload] control thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,547 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,574 | INFO     | [job] job monitor thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,825 | INFO     | [payload] validate_post thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:15,839 | INFO     | [data] copytool_in thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,093 | INFO     | all job control threads have been joined
[2025-12-17 05:59:54] 2025-12-17 10:59:16,215 | INFO     | [payload] failed_post thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 05:59:54] 2025-12-17 10:59:16,286 | INFO     | [data] control thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,542 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,759 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,802 | INFO     | [job] validate thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:16,953 | INFO     | [data] copytool_out thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:17,098 | INFO     | [job] control thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:20,222 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:24,534 | INFO     | job.realtimelogging is not enabled
[2025-12-17 05:59:54] 2025-12-17 10:59:25,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 05:59:54] 2025-12-17 10:59:44,866 | INFO     | PID=28673 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-17 05:59:54] 2025-12-17 10:59:44,874 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 05:59:54] 2025-12-17 10:59:44,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 05:59:54] 2025-12-17 10:59:44,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 05:59:54] 2025-12-17 10:59:46,884 | INFO     | [monitor] cgroup control has ended
[2025-12-17 05:59:54] 2025-12-17 10:59:48,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008919648064)>', '<ExcThread(monitor, started 140008316974848)>']
[2025-12-17 05:59:54] 2025-12-17 10:59:48,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 05:59:54] 2025-12-17 10:59:48,895 | INFO     | [monitor] control thread has ended
[2025-12-17 05:59:54] 2025-12-17 10:59:53,751 | INFO     | all workflow threads have been joined
[2025-12-17 05:59:54] 2025-12-17 10:59:53,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 05:59:54] 2025-12-17 10:59:53,751 | INFO     | traces error code: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:53,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 05:59:54] 2025-12-17 10:59:53,833 [wrapper] ==== pilot stdout END ====
[2025-12-17 05:59:54] 2025-12-17 10:59:53,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 05:59:54] 2025-12-17 10:59:53,841 [wrapper] pilotpid: 28673
[2025-12-17 05:59:54] 2025-12-17 10:59:53,845 [wrapper] Pilot exit status: 0
[2025-12-17 05:59:54] 2025-12-17 10:59:53,860 [wrapper] pandaids: 6931734119
[2025-12-17 05:59:54] 2025-12-17 10:59:53,900 [wrapper] cleanup supervisor_pilot 31470 28674
[2025-12-17 05:59:54] 2025-12-17 10:59:53,904 [wrapper] Test setup, not cleaning
[2025-12-17 05:59:54] 2025-12-17 10:59:53,907 [wrapper] apfmon messages muted
[2025-12-17 05:59:54] 2025-12-17 10:59:53,911 [wrapper] ==== wrapper stdout END ====
[2025-12-17 05:59:54] 2025-12-17 10:59:53,914 [wrapper] ==== wrapper stderr END ====
[2025-12-17 05:59:54]  *** Error codes and diagnostics ***
[2025-12-17 05:59:54]     "exeErrorCode": 0,
[2025-12-17 05:59:54]     "exeErrorDiag": "",
[2025-12-17 05:59:54]     "pilotErrorCode": 0,
[2025-12-17 05:59:54]     "pilotErrorDiag": "",
[2025-12-17 05:59:54]  *** Listing of results directory ***
[2025-12-17 05:59:54] total 341492
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 17:36 pilot3.tar.gz
[2025-12-17 05:59:54] -rwx------ 1 boincer umatlas     36322 Dec 16 17:37 runpilot2-wrapper.sh
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 17:38 queuedata.json
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas       100 Dec 17 04:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 05:59:54] -rwxr-xr-x 1 boincer umatlas      7986 Dec 17 04:40 run_atlas
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas       105 Dec 17 04:40 job.xml
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas 192671351 Dec 17 04:40 EVNT.47886929._000322.pool.root.1
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 04:40 start_atlas.sh
[2025-12-17 05:59:54] drwxrwx--x 2 boincer umatlas      4096 Dec 17 04:40 shared
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas    592402 Dec 17 04:40 input.tar.gz
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas         0 Dec 17 04:40 boinc_lockfile
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas      2512 Dec 17 04:40 pandaJob.out
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas        57 Dec 17 04:40 setup.sh.local
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas    987431 Dec 17 04:40 agis_schedconf.cvmfs.json
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas   1516240 Dec 17 04:40 agis_ddmendpoints.agis.ALL.json
[2025-12-17 05:59:54] drwx------ 5 boincer umatlas      4096 Dec 17 04:40 pilot3
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas      5953 Dec 17 05:56 init_data.xml
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas 150993248 Dec 17 05:58 HITS.47886933._007867.pool.root.1
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas       529 Dec 17 05:58 boinc_task_state.xml
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas      1057 Dec 17 05:59 memory_monitor_summary.json
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas    371902 Dec 17 05:59 log.47886933._007867.job.log.tgz.1
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas      7840 Dec 17 05:59 heartbeat.json
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas      8192 Dec 17 05:59 boinc_mmap_file
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas        27 Dec 17 05:59 wrapper_checkpoint.txt
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas        95 Dec 17 05:59 pilot_heartbeat.json
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas      5004 Dec 17 05:59 pilotlog.txt
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas    682432 Dec 17 05:59 log.47886933._007867.job.log.1
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas       357 Dec 17 05:59 output.list
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas       620 Dec 17 05:59 runtime_log
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas   1075200 Dec 17 05:59 result.tar.gz
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas      9344 Dec 17 05:59 runtime_log.err
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas       659 Dec 17 05:59 guGNDmSqsp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsraKDmBGqwln.diag
[2025-12-17 05:59:54] -rw-r--r-- 1 boincer umatlas     22396 Dec 17 05:59 stderr.txt
[2025-12-17 05:59:54] HITS file was successfully produced:
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas 150993248 Dec 17 05:58 shared/HITS.pool.root.1
[2025-12-17 05:59:54]  *** Contents of shared directory: ***
[2025-12-17 05:59:54] total 337264
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas 192671351 Dec 17 04:40 ATLAS.root_0
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas     15847 Dec 17 04:40 start_atlas.sh
[2025-12-17 05:59:54] -rw-r--r-- 2 boincer umatlas    592402 Dec 17 04:40 input.tar.gz
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas 150993248 Dec 17 05:58 HITS.pool.root.1
[2025-12-17 05:59:54] -rw------- 1 boincer umatlas   1075200 Dec 17 05:59 result.tar.gz
05:59:55 (24989): run_atlas exited; CPU time 50691.341962
05:59:55 (24989): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN