Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:30 (1982387): wrapper (7.7.26015): starting
17:21:30 (1982387): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 17:21:30] Arguments: --nthreads 3
[2025-12-17 17:21:30] Threads: 3
[2025-12-17 17:21:30] Checking for CVMFS
[2025-12-17 17:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 17:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 17:21:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 17:21:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 17:21:30] 2.9.2.0 415797 5884 81364 154112 0 188 20621099 36864000 0 130560 0 4069793 99.990 207160 16275 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 17:21:30] CVMFS is ok
[2025-12-17 17:21:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 17:21:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 17:21:30] Further information can be found at the LHC@home message board.
[2025-12-17 17:21:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 17:21:30] Checking for apptainer binary...
[2025-12-17 17:21:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 17:21:30] Running /usr/bin/apptainer --version
[2025-12-17 17:21:30] apptainer version 1.4.1-1.1
[2025-12-17 17:21:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 17:21:30] magicA246a
[2025-12-17 17:21:30] apptainer works
[2025-12-17 17:21:30] Set ATHENA_PROC_NUMBER=3
[2025-12-17 17:21:30] Set ATHENA_CORE_NUMBER=3
[2025-12-17 17:21:30] Starting ATLAS job with PandaID=6931731657
[2025-12-17 17:21:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 18:49:50]  *** The last 200 lines of the pilot log: ***
[2025-12-17 18:49:50] 2025-12-17 17:49:19,347 | INFO     | will attempt to kill all subprocesses of pid=1992555
[2025-12-17 18:49:50] 2025-12-17 17:49:19,392 | INFO     | process IDs to be killed: [1992555] (in reverse order)
[2025-12-17 18:49:50] 2025-12-17 17:49:19,418 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 18:49:50] 2025-12-17 17:49:19,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 18:49:50] 2025-12-17 17:49:19,419 | INFO     | did not find any defunct processes belonging to 1992555
[2025-12-17 18:49:50] 2025-12-17 17:49:19,420 | INFO     | did not find any defunct processes belonging to 1992555
[2025-12-17 18:49:50] 2025-12-17 17:49:19,420 | INFO     | ready for new job
[2025-12-17 18:49:50] 2025-12-17 17:49:19,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 18:49:50] 2025-12-17 17:49:19,421 | INFO     | ***************************************
[2025-12-17 18:49:50] 2025-12-17 17:49:19,421 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 18:49:50] 2025-12-17 17:49:19,421 | INFO     | ***************************************
[2025-12-17 18:49:50] 2025-12-17 17:49:19,421 | INFO     | 
[2025-12-17 18:49:50] 2025-12-17 17:49:19,422 | INFO     | architecture information:
[2025-12-17 18:49:50] 2025-12-17 17:49:19,422 | INFO     | executing command: cat /etc/os-release
[2025-12-17 18:49:50] 2025-12-17 17:49:19,430 | INFO     | cat /etc/os-release:
[2025-12-17 18:49:50] NAME="CentOS Linux"
[2025-12-17 18:49:50] VERSION="7 (Core)"
[2025-12-17 18:49:50] ID="centos"
[2025-12-17 18:49:50] ID_LIKE="rhel fedora"
[2025-12-17 18:49:50] VERSION_ID="7"
[2025-12-17 18:49:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 18:49:50] ANSI_COLOR="0;31"
[2025-12-17 18:49:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 18:49:50] HOME_URL="https://www.centos.org/"
[2025-12-17 18:49:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 18:49:50] 
[2025-12-17 18:49:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 18:49:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 18:49:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 18:49:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 18:49:50] 
[2025-12-17 18:49:50] 2025-12-17 17:49:19,430 | INFO     | ***************************************
[2025-12-17 18:49:50] 2025-12-17 17:49:19,934 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 18:49:50] 2025-12-17 17:49:19,946 | INFO     | sufficient remaining disk space (284065529856 B)
[2025-12-17 18:49:50] 2025-12-17 17:49:19,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 18:49:50] 2025-12-17 17:49:19,946 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 18:49:50] 2025-12-17 17:49:19,946 | INFO     | update_server=False
[2025-12-17 18:49:50] 2025-12-17 17:49:19,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 18:49:50] 2025-12-17 17:49:19,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 18:49:50] 2025-12-17 17:49:19,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 18:49:50] 2025-12-17 17:49:20,238 | INFO     | all data control threads have been joined
[2025-12-17 18:49:50] 2025-12-17 17:49:20,370 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 18:49:50] 2025-12-17 17:49:20,370 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 18:49:50] 2025-12-17 17:49:20,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 18:49:50] 2025-12-17 17:49:20,370 | INFO     | will abort loop
[2025-12-17 18:49:50] 2025-12-17 17:49:20,951 | INFO     | [job] retrieve thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:20,951 | INFO     | all payload control threads have been joined
[2025-12-17 18:49:50] 2025-12-17 17:49:21,045 | INFO     | all job control threads have been joined
[2025-12-17 18:49:50] 2025-12-17 17:49:21,244 | INFO     | [data] control thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,300 | INFO     | [payload] failed_post thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,376 | INFO     | [job] job monitor thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,815 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,937 | INFO     | [data] copytool_in thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,953 | INFO     | [data] copytool_out thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:21,957 | INFO     | [payload] control thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,051 | INFO     | [job] control thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,335 | INFO     | [job] validate thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,346 | INFO     | [payload] validate_post thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,431 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,438 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:22,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 18:49:50] 2025-12-17 17:49:23,915 | INFO     | [job] queue monitor thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:23,948 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 18:49:50] 2025-12-17 17:49:42,357 | INFO     | [monitor] cgroup control has ended
[2025-12-17 18:49:50] 2025-12-17 17:49:43,342 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140719466022720)>', '<ExcThread(monitor, started 140718806910720)>']
[2025-12-17 18:49:50] 2025-12-17 17:49:48,354 | INFO     | all workflow threads have been joined
[2025-12-17 18:49:50] 2025-12-17 17:49:48,354 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 18:49:50] 2025-12-17 17:49:48,354 | INFO     | traces error code: 0
[2025-12-17 18:49:50] 2025-12-17 17:49:48,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 18:49:50] 2025-12-17 17:49:50,356 | INFO     | PID=1986111 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 18:49:50] 2025-12-17 17:49:50,357 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 18:49:50] 2025-12-17 17:49:50,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 18:49:50] 2025-12-17 17:49:50,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 18:49:50] 2025-12-17 17:49:50,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 18:49:50] 2025-12-17 17:49:50,357 | INFO     | [monitor] control thread has ended
[2025-12-17 18:49:50] 2025-12-17 17:49:50,406 [wrapper] ==== pilot stdout END ====
[2025-12-17 18:49:50] 2025-12-17 17:49:50,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 18:49:50] 2025-12-17 17:49:50,410 [wrapper] pilotpid: 1986111
[2025-12-17 18:49:50] 2025-12-17 17:49:50,413 [wrapper] Pilot exit status: 0
[2025-12-17 18:49:50] 2025-12-17 17:49:50,420 [wrapper] pandaids: 6931731657
[2025-12-17 18:49:50] 2025-12-17 17:49:50,437 [wrapper] cleanup supervisor_pilot 2004912 1986112
[2025-12-17 18:49:50] 2025-12-17 17:49:50,439 [wrapper] Test setup, not cleaning
[2025-12-17 18:49:50] 2025-12-17 17:49:50,442 [wrapper] apfmon messages muted
[2025-12-17 18:49:50] 2025-12-17 17:49:50,444 [wrapper] ==== wrapper stdout END ====
[2025-12-17 18:49:50] 2025-12-17 17:49:50,446 [wrapper] ==== wrapper stderr END ====
[2025-12-17 18:49:50]  *** Error codes and diagnostics ***
[2025-12-17 18:49:50]     "exeErrorCode": 0,
[2025-12-17 18:49:50]     "exeErrorDiag": "",
[2025-12-17 18:49:50]     "pilotErrorCode": 0,
[2025-12-17 18:49:50]     "pilotErrorDiag": "",
[2025-12-17 18:49:50]  *** Listing of results directory ***
[2025-12-17 18:49:50] total 338836
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc    579449 Dec 16 23:36 pilot3.tar.gz
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc      5112 Dec 16 23:36 queuedata.json
[2025-12-17 18:49:50] -rwx------ 1 boinc boinc     36322 Dec 16 23:36 runpilot2-wrapper.sh
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc       100 Dec 17 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 18:49:50] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 17:21 run_atlas
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc       105 Dec 17 17:21 job.xml
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc 190577914 Dec 17 17:21 EVNT.47886829._000596.pool.root.1
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc    592418 Dec 17 17:21 input.tar.gz
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc     15847 Dec 17 17:21 start_atlas.sh
[2025-12-17 18:49:50] drwxrwx--x 2 boinc boinc      4096 Dec 17 17:21 shared
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc         0 Dec 17 17:21 boinc_setup_complete
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc      6447 Dec 17 17:21 init_data.xml
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc         0 Dec 17 17:21 boinc_lockfile
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc      2540 Dec 17 17:21 pandaJob.out
[2025-12-17 18:49:50] -rw------- 1 boinc boinc    987423 Dec 17 17:21 agis_schedconf.cvmfs.json
[2025-12-17 18:49:50] -rw------- 1 boinc boinc   1516240 Dec 17 17:21 agis_ddmendpoints.agis.ALL.json
[2025-12-17 18:49:50] drwx------ 5 boinc boinc      4096 Dec 17 17:21 pilot3
[2025-12-17 18:49:50] -rw------- 1 boinc boinc 150437463 Dec 17 18:48 HITS.47886831._015437.pool.root.1
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc       529 Dec 17 18:49 boinc_task_state.xml
[2025-12-17 18:49:50] -rw------- 1 boinc boinc        95 Dec 17 18:49 pilot_heartbeat.json
[2025-12-17 18:49:50] -rw------- 1 boinc boinc      1016 Dec 17 18:49 memory_monitor_summary.json
[2025-12-17 18:49:50] -rw------- 1 boinc boinc    260032 Dec 17 18:49 log.47886831._015437.job.log.tgz.1
[2025-12-17 18:49:50] -rw------- 1 boinc boinc      7758 Dec 17 18:49 heartbeat.json
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc        27 Dec 17 18:49 wrapper_checkpoint.txt
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc      8192 Dec 17 18:49 boinc_mmap_file
[2025-12-17 18:49:50] -rw------- 1 boinc boinc       747 Dec 17 18:49 pilotlog.txt
[2025-12-17 18:49:50] -rw------- 1 boinc boinc    770205 Dec 17 18:49 log.47886831._015437.job.log.1
[2025-12-17 18:49:50] -rw------- 1 boinc boinc       357 Dec 17 18:49 output.list
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc       620 Dec 17 18:49 runtime_log
[2025-12-17 18:49:50] -rw------- 1 boinc boinc   1044480 Dec 17 18:49 result.tar.gz
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc      8917 Dec 17 18:49 runtime_log.err
[2025-12-17 18:49:50] -rw------- 1 boinc boinc       662 Dec 17 18:49 A05LDmypsp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPmaKDm6nqhpm.diag
[2025-12-17 18:49:50] -rw-r--r-- 1 boinc boinc     10431 Dec 17 18:49 stderr.txt
[2025-12-17 18:49:50] HITS file was successfully produced:
[2025-12-17 18:49:50] -rw------- 1 boinc boinc 150437463 Dec 17 18:48 shared/HITS.pool.root.1
[2025-12-17 18:49:50]  *** Contents of shared directory: ***
[2025-12-17 18:49:50] total 334648
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc 190577914 Dec 17 17:21 ATLAS.root_0
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc    592418 Dec 17 17:21 input.tar.gz
[2025-12-17 18:49:50] -rw-r--r-- 2 boinc boinc     15847 Dec 17 17:21 start_atlas.sh
[2025-12-17 18:49:50] -rw------- 1 boinc boinc 150437463 Dec 17 18:48 HITS.pool.root.1
[2025-12-17 18:49:50] -rw------- 1 boinc boinc   1044480 Dec 17 18:49 result.tar.gz
18:49:52 (1982387): run_atlas exited; CPU time 15108.331045
18:49:52 (1982387): called boinc_finish(0)

</stderr_txt>
]]>

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