Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:37:16 (1595784): wrapper (7.7.26015): starting
15:37:16 (1595784): wrapper: running run_atlas (--nthreads 2)
[2025-12-17 15:37:16] Arguments: --nthreads 2
[2025-12-17 15:37:16] Threads: 2
[2025-12-17 15:37:16] Checking for CVMFS
[2025-12-17 15:37:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 15:37:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 15:37:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 15:37:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 15:37:16] 2.9.2.0 357904 6326 64380 154112 3 62 28004547 36864000 0 130560 0 3262996 99.987 228266 15722 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 15:37:16] CVMFS is ok
[2025-12-17 15:37:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 15:37:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 15:37:16] Further information can be found at the LHC@home message board.
[2025-12-17 15:37:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 15:37:16] Checking for apptainer binary...
[2025-12-17 15:37:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 15:37:16] Running /usr/bin/apptainer --version
[2025-12-17 15:37:16] apptainer version 1.4.1-1.1
[2025-12-17 15:37:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 15:37:16] atlasA229
[2025-12-17 15:37:16] apptainer works
[2025-12-17 15:37:16] Set ATHENA_PROC_NUMBER=2
[2025-12-17 15:37:16] Set ATHENA_CORE_NUMBER=2
[2025-12-17 15:37:16] Starting ATLAS job with PandaID=6933463211
[2025-12-17 15:37:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 17:33:05]  *** The last 200 lines of the pilot log: ***
[2025-12-17 17:33:05] 2025-12-17 16:32:33,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | job 6933463211 has completed (purged errors)
[2025-12-17 17:33:05] 2025-12-17 16:32:33,641 | INFO     | overall cleanup function is called
[2025-12-17 17:33:05] 2025-12-17 16:32:34,645 | INFO     | --- collectZombieJob: --- 10, [1605913]
[2025-12-17 17:33:05] 2025-12-17 16:32:34,645 | INFO     | zombie collector waiting for pid 1605913
[2025-12-17 17:33:05] 2025-12-17 16:32:34,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 17:33:05] 2025-12-17 16:32:34,646 | INFO     | collected zombie processes
[2025-12-17 17:33:05] 2025-12-17 16:32:34,646 | INFO     | will attempt to kill all subprocesses of pid=1605913
[2025-12-17 17:33:05] 2025-12-17 16:32:34,682 | INFO     | process IDs to be killed: [1605913] (in reverse order)
[2025-12-17 17:33:05] 2025-12-17 16:32:34,703 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 17:33:05] 2025-12-17 16:32:34,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 17:33:05] 2025-12-17 16:32:34,704 | INFO     | did not find any defunct processes belonging to 1605913
[2025-12-17 17:33:05] 2025-12-17 16:32:34,705 | INFO     | did not find any defunct processes belonging to 1605913
[2025-12-17 17:33:05] 2025-12-17 16:32:34,705 | INFO     | ready for new job
[2025-12-17 17:33:05] 2025-12-17 16:32:34,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | ***************************************
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | ***************************************
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | 
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | architecture information:
[2025-12-17 17:33:05] 2025-12-17 16:32:34,706 | INFO     | executing command: cat /etc/os-release
[2025-12-17 17:33:05] 2025-12-17 16:32:34,714 | INFO     | cat /etc/os-release:
[2025-12-17 17:33:05] NAME="CentOS Linux"
[2025-12-17 17:33:05] VERSION="7 (Core)"
[2025-12-17 17:33:05] ID="centos"
[2025-12-17 17:33:05] ID_LIKE="rhel fedora"
[2025-12-17 17:33:05] VERSION_ID="7"
[2025-12-17 17:33:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 17:33:05] ANSI_COLOR="0;31"
[2025-12-17 17:33:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 17:33:05] HOME_URL="https://www.centos.org/"
[2025-12-17 17:33:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 17:33:05] 
[2025-12-17 17:33:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 17:33:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 17:33:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 17:33:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 17:33:05] 
[2025-12-17 17:33:05] 2025-12-17 16:32:34,714 | INFO     | ***************************************
[2025-12-17 17:33:05] 2025-12-17 16:32:35,218 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | INFO     | sufficient remaining disk space (332745670656 B)
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | INFO     | update_server=False
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 17:33:05] 2025-12-17 16:32:35,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:33:05] 2025-12-17 16:32:35,385 | INFO     | all job control threads have been joined
[2025-12-17 17:33:05] 2025-12-17 16:32:35,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 17:33:05] 2025-12-17 16:32:35,682 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 17:33:05] 2025-12-17 16:32:35,682 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 17:33:05] 2025-12-17 16:32:35,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 17:33:05] 2025-12-17 16:32:35,683 | INFO     | will abort loop
[2025-12-17 17:33:05] 2025-12-17 16:32:35,979 | INFO     | all data control threads have been joined
[2025-12-17 17:33:05] 2025-12-17 16:32:36,028 | INFO     | all payload control threads have been joined
[2025-12-17 17:33:05] 2025-12-17 16:32:36,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 17:33:05] 2025-12-17 16:32:36,236 | INFO     | [job] retrieve thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:36,237 | INFO     | [job] queue monitor thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:36,391 | INFO     | [job] control thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:36,549 | INFO     | [payload] validate_post thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:36,689 | INFO     | [job] job monitor thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:36,985 | INFO     | [data] control thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,034 | INFO     | [payload] control thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,062 | INFO     | [data] copytool_in thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,063 | INFO     | [job] validate thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,066 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,159 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,228 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:37,361 | INFO     | [payload] failed_post thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:38,069 | INFO     | [data] copytool_out thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:38,503 | INFO     | [monitor] cgroup control has ended
[2025-12-17 17:33:05] 2025-12-17 16:32:39,560 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:45,496 | INFO     | job.realtimelogging is not enabled
[2025-12-17 17:33:05] 2025-12-17 16:32:46,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 17:33:05] 2025-12-17 16:32:48,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140536896857920)>', '<ExcThread(monitor, started 140535960434432)>']
[2025-12-17 17:33:05] 2025-12-17 16:32:53,588 | INFO     | all workflow threads have been joined
[2025-12-17 17:33:05] 2025-12-17 16:32:53,589 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 17:33:05] 2025-12-17 16:32:53,589 | INFO     | traces error code: 0
[2025-12-17 17:33:05] 2025-12-17 16:32:53,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 17:33:05] 2025-12-17 16:33:04,927 | INFO     | PID=1599491 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 17:33:05] 2025-12-17 16:33:04,928 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 17:33:05] 2025-12-17 16:33:04,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 17:33:05] 2025-12-17 16:33:04,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 17:33:05] 2025-12-17 16:33:04,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 17:33:05] 2025-12-17 16:33:04,928 | INFO     | [monitor] control thread has ended
[2025-12-17 17:33:05] 2025-12-17 16:33:04,968 [wrapper] ==== pilot stdout END ====
[2025-12-17 17:33:05] 2025-12-17 16:33:04,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 17:33:05] 2025-12-17 16:33:04,973 [wrapper] pilotpid: 1599491
[2025-12-17 17:33:05] 2025-12-17 16:33:04,976 [wrapper] Pilot exit status: 0
[2025-12-17 17:33:05] 2025-12-17 16:33:04,982 [wrapper] pandaids: 6933463211
[2025-12-17 17:33:05] 2025-12-17 16:33:04,995 [wrapper] cleanup supervisor_pilot 1620200 1599492
[2025-12-17 17:33:05] 2025-12-17 16:33:04,997 [wrapper] Test setup, not cleaning
[2025-12-17 17:33:05] 2025-12-17 16:33:04,999 [wrapper] apfmon messages muted
[2025-12-17 17:33:05] 2025-12-17 16:33:05,001 [wrapper] ==== wrapper stdout END ====
[2025-12-17 17:33:05] 2025-12-17 16:33:05,003 [wrapper] ==== wrapper stderr END ====
[2025-12-17 17:33:05]  *** Error codes and diagnostics ***
[2025-12-17 17:33:05]     "exeErrorCode": 0,
[2025-12-17 17:33:05]     "exeErrorDiag": "",
[2025-12-17 17:33:05]     "pilotErrorCode": 0,
[2025-12-17 17:33:05]     "pilotErrorDiag": "",
[2025-12-17 17:33:05]  *** Listing of results directory ***
[2025-12-17 17:33:05] total 367972
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc      5112 Dec 16 21:04 queuedata.json
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc    579449 Dec 16 21:04 pilot3.tar.gz
[2025-12-17 17:33:05] -rwx------ 1 boinc boinc     36322 Dec 16 21:04 runpilot2-wrapper.sh
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc       100 Dec 17 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 17:33:05] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 15:37 run_atlas
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc       105 Dec 17 15:37 job.xml
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc 194427215 Dec 17 15:37 EVNT.47899040._000142.pool.root.1
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc    592389 Dec 17 15:37 input.tar.gz
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:37 start_atlas.sh
[2025-12-17 17:33:05] drwxrwx--x 2 boinc boinc      4096 Dec 17 15:37 shared
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:37 boinc_setup_complete
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc      6207 Dec 17 15:37 init_data.xml
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc         0 Dec 17 15:37 boinc_lockfile
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc      2492 Dec 17 15:37 pandaJob.out
[2025-12-17 17:33:05] -rw------- 1 boinc boinc    987423 Dec 17 15:37 agis_schedconf.cvmfs.json
[2025-12-17 17:33:05] -rw------- 1 boinc boinc   1516240 Dec 17 15:37 agis_ddmendpoints.agis.ALL.json
[2025-12-17 17:33:05] drwx------ 5 boinc boinc      4096 Dec 17 15:37 pilot3
[2025-12-17 17:33:05] -rw------- 1 boinc boinc 175973903 Dec 17 17:32 HITS.47899042._003689.pool.root.1
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc       530 Dec 17 17:32 boinc_task_state.xml
[2025-12-17 17:33:05] -rw------- 1 boinc boinc      1013 Dec 17 17:32 memory_monitor_summary.json
[2025-12-17 17:33:05] -rw------- 1 boinc boinc    250661 Dec 17 17:32 log.47899042._003689.job.log.tgz.1
[2025-12-17 17:33:05] -rw------- 1 boinc boinc      7746 Dec 17 17:32 heartbeat.json
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc        27 Dec 17 17:32 wrapper_checkpoint.txt
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc      8192 Dec 17 17:32 boinc_mmap_file
[2025-12-17 17:33:05] -rw------- 1 boinc boinc       747 Dec 17 17:33 pilotlog.txt
[2025-12-17 17:33:05] -rw------- 1 boinc boinc        95 Dec 17 17:33 pilot_heartbeat.json
[2025-12-17 17:33:05] -rw------- 1 boinc boinc    997871 Dec 17 17:33 log.47899042._003689.job.log.1
[2025-12-17 17:33:05] -rw------- 1 boinc boinc       357 Dec 17 17:33 output.list
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc       620 Dec 17 17:33 runtime_log
[2025-12-17 17:33:05] -rw------- 1 boinc boinc   1269760 Dec 17 17:33 result.tar.gz
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc      8912 Dec 17 17:33 runtime_log.err
[2025-12-17 17:33:05] -rw------- 1 boinc boinc       662 Dec 17 17:33 IZRLDmxSqp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmL4VKDmBPMban.diag
[2025-12-17 17:33:05] -rw-r--r-- 1 boinc boinc     12676 Dec 17 17:33 stderr.txt
[2025-12-17 17:33:05] HITS file was successfully produced:
[2025-12-17 17:33:05] -rw------- 1 boinc boinc 175973903 Dec 17 17:32 shared/HITS.pool.root.1
[2025-12-17 17:33:05]  *** Contents of shared directory: ***
[2025-12-17 17:33:05] total 363568
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc 194427215 Dec 17 15:37 ATLAS.root_0
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc    592389 Dec 17 15:37 input.tar.gz
[2025-12-17 17:33:05] -rw-r--r-- 2 boinc boinc     15847 Dec 17 15:37 start_atlas.sh
[2025-12-17 17:33:05] -rw------- 1 boinc boinc 175973903 Dec 17 17:32 HITS.pool.root.1
[2025-12-17 17:33:05] -rw------- 1 boinc boinc   1269760 Dec 17 17:33 result.tar.gz
17:33:06 (1595784): run_atlas exited; CPU time 13426.893976
17:33:06 (1595784): called boinc_finish(0)

</stderr_txt>
]]>

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