Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:13:55 (3947554): wrapper (7.7.26015): starting
10:13:55 (3947554): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 10:13:55] Arguments: --nthreads 4
[2025-12-18 10:13:55] Threads: 4
[2025-12-18 10:13:55] Checking for CVMFS
[2025-12-18 10:13:55] No cvmfs_config command found, will try listing directly
[2025-12-18 10:13:55] CVMFS is ok
[2025-12-18 10:13:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 10:13:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 10:13:55] Further information can be found at the LHC@home message board.
[2025-12-18 10:13:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 10:13:55] Checking for apptainer binary...
[2025-12-18 10:13:55] which: no apptainer in ((null))
[2025-12-18 10:13:55] apptainer is not installed, using version from CVMFS
[2025-12-18 10:13:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 10:13:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-12-18 10:13:55] apptainer works
[2025-12-18 10:13:55] Set ATHENA_PROC_NUMBER=4
[2025-12-18 10:13:55] Set ATHENA_CORE_NUMBER=4
[2025-12-18 10:13:55] Starting ATLAS job with PandaID=6931733254
[2025-12-18 10:13:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 12:54:51]  *** The last 200 lines of the pilot log: ***
[2025-12-18 12:54:51] 2025-12-18 11:50:18,964 | INFO     | time since job start (9368s) is within the limit (174528.0s)
[2025-12-18 12:54:51] 2025-12-18 11:50:20,106 | INFO     | monitor loop #642: job 0:6931733254 is in state 'finished'
[2025-12-18 12:54:51] 2025-12-18 11:50:20,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 12:54:51] 2025-12-18 11:50:20,965 | INFO     | time since job start (9370s) is within the limit (174528.0s)
[2025-12-18 12:54:51] 2025-12-18 11:50:22,609 | INFO     | monitor loop #643: job 0:6931733254 is in state 'finished'
[2025-12-18 12:54:51] 2025-12-18 11:50:22,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 12:54:51] 2025-12-18 11:50:22,971 | INFO     | time since job start (9372s) is within the limit (174528.0s)
[2025-12-18 12:54:51] 2025-12-18 11:50:24,976 | INFO     | time since job start (9374s) is within the limit (174528.0s)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,040 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 12:54:51] 2025-12-18 11:50:25,061 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2697.4894296875
[2025-12-18 12:54:51] 2025-12-18 11:50:25,085 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6931733254/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,086 | INFO     | extracted standard info from prmon json
[2025-12-18 12:54:51] 2025-12-18 11:50:25,086 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 12:54:51] 2025-12-18 11:50:25,086 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 12:54:51] 2025-12-18 11:50:25,087 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 12:54:51] 2025-12-18 11:50:25,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 12:54:51] 2025-12-18 11:50:25,090 | INFO     | fitting pss+swap vs Time
[2025-12-18 12:54:51] 2025-12-18 11:50:25,090 | INFO     | sum of square deviations: 1110539892.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,091 | INFO     | sum of deviations: 10249631384.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,091 | INFO     | mean x: 1766053919.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,092 | INFO     | mean y: 2309007.2418300654
[2025-12-18 12:54:51] 2025-12-18 11:50:25,092 | INFO     | intersect: -16297332099.228745
[2025-12-18 12:54:51] 2025-12-18 11:50:25,092 | INFO     | chi2: 1.182046307430647
[2025-12-18 12:54:51] 2025-12-18 11:50:25,092 | INFO     | sum of square deviations: 1005179777.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,093 | INFO     | sum of deviations: 9874893744.000002
[2025-12-18 12:54:51] 2025-12-18 11:50:25,093 | INFO     | mean x: 1766053766.5
[2025-12-18 12:54:51] 2025-12-18 11:50:25,093 | INFO     | mean y: 2308464.6486486485
[2025-12-18 12:54:51] 2025-12-18 11:50:25,093 | INFO     | intersect: -17347417116.2098
[2025-12-18 12:54:51] 2025-12-18 11:50:25,094 | INFO     | chi2: 1.1831488376748365
[2025-12-18 12:54:51] 2025-12-18 11:50:25,094 | INFO     | current chi2=1.1831488376748365 (change=-0.09327301623114025 %)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,094 | INFO     | right removable region: 147
[2025-12-18 12:54:51] 2025-12-18 11:50:25,094 | INFO     | sum of square deviations: 1005179777.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,095 | INFO     | sum of deviations: -2580412423.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,095 | INFO     | mean x: 1766054071.5
[2025-12-18 12:54:51] 2025-12-18 11:50:25,095 | INFO     | mean y: 2327040.3378378376
[2025-12-18 12:54:51] 2025-12-18 11:50:25,095 | INFO     | intersect: 4535991535.050738
[2025-12-18 12:54:51] 2025-12-18 11:50:25,096 | INFO     | chi2: 0.005409935112269428
[2025-12-18 12:54:51] 2025-12-18 11:50:25,096 | INFO     | current chi2=0.005409935112269428 (change=99.54232460452174 %)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,096 | INFO     | sum of square deviations: 906703512.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | sum of deviations: -1566632072.9999979
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | mean x: 1766054224.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | mean y: 2325473.685314685
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | intersect: 3053771898.4075813
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | chi2: 0.004100831155009969
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | current chi2=0.004100831155009969 (change=24.198145265929067 %)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,097 | INFO     | left removable region: 20
[2025-12-18 12:54:51] 2025-12-18 11:50:25,098 | INFO     | sum of square deviations: 635130048.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,098 | INFO     | sum of deviations: -149925922.00000006
[2025-12-18 12:54:51] 2025-12-18 11:50:25,098 | INFO     | mean x: 1766054346.0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,099 | INFO     | mean y: 2322912.8346456694
[2025-12-18 12:54:51] 2025-12-18 11:50:25,099 | INFO     | intersect: 419209701.54812366
[2025-12-18 12:54:51] 2025-12-18 11:50:25,099 | INFO     | chi2: 0.0013000747653237128
[2025-12-18 12:54:51] 2025-12-18 11:50:25,099 | INFO     | current memory leak: -0.24 B/s (using 127 data points, chi2=0.00)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,099 | INFO     | could have reported an average CPU frequency of 2694 MHz (9 samples)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | ..............................
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . Timing measurements:
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . get job = 0 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . initial setup = 1 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . payload setup = 8 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . stage-in = 0 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . payload execution = 9335 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . stage-out = 0 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | . log creation = 0 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,100 | INFO     | ..............................
[2025-12-18 12:54:51] 2025-12-18 11:50:25,195 | INFO     | 
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | job summary report
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | --------------------------------------------------
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | PanDA job id: 6931733254
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | task id: 47886933
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | errors: (none)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | pilot state: finished 
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | transexitcode: 0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,196 | INFO     | exeerrorcode: 0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | exeerrordiag: 
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | exitcode: 0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | exitmsg: OK
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | cpuconsumptiontime: 35779 s
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | nevents: 400
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | neventsw: 0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | pid: 3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | pgrp: 3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | corecount: 4
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | event service: False
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | sizes: {0: 2283750, 1: 2284005, 7: 2284267, 12: 2284295, 9347: 2312981, 9349: 2322187, 9357: 2322389}
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | --------------------------------------------------
[2025-12-18 12:54:51] 2025-12-18 11:50:25,197 | INFO     | 
[2025-12-18 12:54:51] 2025-12-18 11:50:25,198 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 12:54:51] 2025-12-18 11:50:25,229 | INFO     | job 6931733254 has completed (purged errors)
[2025-12-18 12:54:51] 2025-12-18 11:50:25,229 | INFO     | overall cleanup function is called
[2025-12-18 12:54:51] 2025-12-18 11:50:26,236 | INFO     | --- collectZombieJob: --- 10, [3959122]
[2025-12-18 12:54:51] 2025-12-18 11:50:26,237 | INFO     | zombie collector waiting for pid 3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:26,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 12:54:51] 2025-12-18 11:50:26,237 | INFO     | collected zombie processes
[2025-12-18 12:54:51] 2025-12-18 11:50:26,237 | INFO     | will attempt to kill all subprocesses of pid=3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:27,041 | INFO     | process IDs to be killed: [3959122] (in reverse order)
[2025-12-18 12:54:51] 2025-12-18 11:50:27,275 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 12:54:51] 2025-12-18 11:50:27,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 12:54:51] 2025-12-18 11:50:27,308 | INFO     | did not find any defunct processes belonging to 3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:27,340 | INFO     | did not find any defunct processes belonging to 3959122
[2025-12-18 12:54:51] 2025-12-18 11:50:27,340 | INFO     | ready for new job
[2025-12-18 12:54:51] 2025-12-18 11:50:27,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 12:54:51] 2025-12-18 11:50:27,343 | INFO     | ***************************************
[2025-12-18 12:54:51] 2025-12-18 11:50:27,343 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 12:54:51] 2025-12-18 11:50:27,343 | INFO     | ***************************************
[2025-12-18 12:54:51] 2025-12-18 11:50:27,343 | INFO     | 
[2025-12-18 12:54:51] 2025-12-18 11:50:27,352 | INFO     | architecture information:
[2025-12-18 12:54:51] 2025-12-18 11:50:27,352 | INFO     | executing command: cat /etc/os-release
[2025-12-18 12:54:51] 2025-12-18 11:50:27,378 | INFO     | cat /etc/os-release:
[2025-12-18 12:54:51] NAME="CentOS Linux"
[2025-12-18 12:54:51] VERSION="7 (Core)"
[2025-12-18 12:54:51] ID="centos"
[2025-12-18 12:54:51] ID_LIKE="rhel fedora"
[2025-12-18 12:54:51] VERSION_ID="7"
[2025-12-18 12:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 12:54:51] ANSI_COLOR="0;31"
[2025-12-18 12:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 12:54:51] HOME_URL="https://www.centos.org/"
[2025-12-18 12:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 12:54:51] 
[2025-12-18 12:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 12:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 12:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 12:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 12:54:51] 
[2025-12-18 12:54:51] 2025-12-18 11:50:27,379 | INFO     | ***************************************
[2025-12-18 12:54:51] 2025-12-18 11:50:27,882 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-12-18 12:54:51] 2025-12-18 11:50:27,911 | INFO     | sufficient remaining disk space (3296448217088 B)
[2025-12-18 12:54:51] 2025-12-18 11:50:27,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 12:54:51] 2025-12-18 11:50:27,911 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 12:54:51] 2025-12-18 11:50:27,912 | INFO     | update_server=False
[2025-12-18 12:54:51] 2025-12-18 11:50:27,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 12:54:51] 2025-12-18 11:50:27,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 12:54:51] 2025-12-18 11:50:27,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 12:54:51] 2025-12-18 11:50:28,040 | INFO     | all payload control threads have been joined
[2025-12-18 12:54:51] 2025-12-18 11:50:28,108 | INFO     | all data control threads have been joined
[2025-12-18 12:54:51] 2025-12-18 11:50:28,507 | INFO     | all job control threads have been joined
[2025-12-18 12:54:51] 2025-12-18 11:50:28,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 12:54:51] 2025-12-18 11:50:28,625 | INFO     | aborting loop
[2025-12-18 12:54:51] 2025-12-18 11:50:28,917 | INFO     | [job] retrieve thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,045 | INFO     | [payload] control thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,056 | INFO     | [payload] validate_post thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,113 | INFO     | [data] control thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,275 | INFO     | [job] validate thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,366 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,513 | INFO     | [job] control thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,517 | INFO     | [payload] failed_post thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,560 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,602 | INFO     | [data] copytool_in thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,629 | INFO     | [job] job monitor thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,656 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:29,919 | INFO     | [data] copytool_out thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:30,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 12:54:51] 2025-12-18 11:50:31,214 | INFO     | [job] queue monitor thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:31,917 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:38,349 | INFO     | job.realtimelogging is not enabled
[2025-12-18 12:54:51] 2025-12-18 11:50:39,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 12:54:51] 2025-12-18 11:50:58,981 | INFO     | PID=3951700 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-18 12:54:51] 2025-12-18 11:50:58,982 | INFO     | .. there are 6 such processes running
[2025-12-18 12:54:51] 2025-12-18 11:50:58,982 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 12:54:51] 2025-12-18 11:50:58,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 12:54:51] 2025-12-18 11:50:58,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 12:54:51] 2025-12-18 11:51:24,173 | INFO     | [monitor] cgroup control has ended
[2025-12-18 12:54:51] 2025-12-18 11:51:24,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23156328818496)>', '<ExcThread(monitor, started 23156091750144)>']
[2025-12-18 12:54:51] 2025-12-18 11:51:25,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 12:54:51] 2025-12-18 11:51:25,091 | INFO     | [monitor] control thread has ended
[2025-12-18 12:54:51] 2025-12-18 11:51:29,252 | INFO     | all workflow threads have been joined
[2025-12-18 12:54:51] 2025-12-18 11:51:29,252 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 12:54:51] 2025-12-18 11:51:29,252 | INFO     | traces error code: 0
[2025-12-18 12:54:51] 2025-12-18 11:51:29,252 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 12:54:51] 2025-12-18 11:51:29,415 [wrapper] ==== pilot stdout END ====
[2025-12-18 12:54:51] 2025-12-18 11:51:29,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 12:54:51] 2025-12-18 11:51:29,424 [wrapper] pilotpid: 3951700
[2025-12-18 12:54:51] 2025-12-18 11:51:29,428 [wrapper] Pilot exit status: 0
[2025-12-18 12:54:51] 2025-12-18 11:51:29,444 [wrapper] pandaids: 6931733254
[2025-12-18 12:54:51] 2025-12-18 11:51:29,614 [wrapper] cleanup supervisor_pilot   28601 3951701
[2025-12-18 12:54:51] 2025-12-18 11:51:29,618 [wrapper] Test setup, not cleaning
[2025-12-18 12:54:51] 2025-12-18 11:51:29,622 [wrapper] apfmon messages muted
[2025-12-18 12:54:51] 2025-12-18 11:51:29,626 [wrapper] ==== wrapper stdout END ====
[2025-12-18 12:54:51] 2025-12-18 11:51:29,630 [wrapper] ==== wrapper stderr END ====
[2025-12-18 12:54:51]  *** Error codes and diagnostics ***
[2025-12-18 12:54:51]     "exeErrorCode": 0,
[2025-12-18 12:54:51]     "exeErrorDiag": "",
[2025-12-18 12:54:51]     "pilotErrorCode": 0,
[2025-12-18 12:54:51]     "pilotErrorDiag": "",
[2025-12-18 12:54:51]  *** Listing of results directory ***
[2025-12-18 12:54:51] total 337056
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc    579449 Dec 16 23:36 pilot3.tar.gz
[2025-12-18 12:54:51] -rwx------ 1 boinc boinc     36322 Dec 16 23:37 runpilot2-wrapper.sh
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc      5112 Dec 16 23:38 queuedata.json
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc       100 Dec 18 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 12:54:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 10:13 run_atlas
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc       105 Dec 18 10:13 job.xml
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc      6692 Dec 18 10:13 init_data.xml
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc 190863965 Dec 18 10:13 EVNT.47886929._000297.pool.root.1
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc     15847 Dec 18 10:13 start_atlas.sh
[2025-12-18 12:54:51] drwxrwx--x 2 boinc boinc      4096 Dec 18 10:13 shared
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc    592394 Dec 18 10:13 input.tar.gz
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc         0 Dec 18 10:13 boinc_lockfile
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc      2513 Dec 18 10:13 pandaJob.out
[2025-12-18 12:54:51] -rw------- 1 boinc boinc    988125 Dec 18 10:14 agis_schedconf.cvmfs.json
[2025-12-18 12:54:51] -rw------- 1 boinc boinc   1516240 Dec 18 10:14 agis_ddmendpoints.agis.ALL.json
[2025-12-18 12:54:51] drwx------ 5 boinc boinc      4096 Dec 18 10:14 pilot3
[2025-12-18 12:54:51] -rw------- 1 boinc boinc 147028885 Dec 18 12:49 HITS.47886933._007765.pool.root.1
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc       528 Dec 18 12:49 boinc_task_state.xml
[2025-12-18 12:54:51] -rw------- 1 boinc boinc      1032 Dec 18 12:50 memory_monitor_summary.json
[2025-12-18 12:54:51] -rw------- 1 boinc boinc    350089 Dec 18 12:50 log.47886933._007765.job.log.tgz.1
[2025-12-18 12:54:51] -rw------- 1 boinc boinc      7779 Dec 18 12:50 heartbeat.json
[2025-12-18 12:54:51] -rw------- 1 boinc boinc        95 Dec 18 12:50 pilot_heartbeat.json
[2025-12-18 12:54:51] -rw------- 1 boinc boinc      4908 Dec 18 12:51 pilotlog.txt
[2025-12-18 12:54:51] -rw------- 1 boinc boinc   1317230 Dec 18 12:51 log.47886933._007765.job.log.1
[2025-12-18 12:54:51] -rw------- 1 boinc boinc       357 Dec 18 12:51 output.list
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc       620 Dec 18 12:51 runtime_log
[2025-12-18 12:54:51] -rw------- 1 boinc boinc   1689600 Dec 18 12:51 result.tar.gz
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc      9222 Dec 18 12:51 runtime_log.err
[2025-12-18 12:54:51] -rw------- 1 boinc boinc       663 Dec 18 12:51 8l0KDm4qsp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaOWKDmDoLyCo.diag
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc        26 Dec 18 12:54 wrapper_checkpoint.txt
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc      8192 Dec 18 12:54 boinc_mmap_file
[2025-12-18 12:54:51] -rw-r--r-- 1 boinc boinc     21079 Dec 18 12:54 stderr.txt
[2025-12-18 12:54:51] HITS file was successfully produced:
[2025-12-18 12:54:51] -rw------- 1 boinc boinc 147028885 Dec 18 12:49 shared/HITS.pool.root.1
[2025-12-18 12:54:51]  *** Contents of shared directory: ***
[2025-12-18 12:54:51] total 332232
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc 190863965 Dec 18 10:13 ATLAS.root_0
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc     15847 Dec 18 10:13 start_atlas.sh
[2025-12-18 12:54:51] -rw-r--r-- 2 boinc boinc    592394 Dec 18 10:13 input.tar.gz
[2025-12-18 12:54:51] -rw------- 1 boinc boinc 147028885 Dec 18 12:49 HITS.pool.root.1
[2025-12-18 12:54:51] -rw------- 1 boinc boinc   1689600 Dec 18 12:51 result.tar.gz
12:54:52 (3947554): run_atlas exited; CPU time 36369.927991
12:54:52 (3947554): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN