Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:39:01 (11287): wrapper (7.7.26015): starting
22:39:01 (11287): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 22:39:01] Arguments: --nthreads 12
[2025-12-16 22:39:01] Threads: 12
[2025-12-16 22:39:01] Checking for CVMFS
[2025-12-16 22:39:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 22:39:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 22:39:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 22:39:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 22:39:02] 2.11.2.0 2984 317346 91320 154097 1 59 18571250 20275201 1 130560 1 142097068 99.974 17788291 14951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 22:39:02] CVMFS is ok
[2025-12-16 22:39:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 22:39:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 22:39:02] Further information can be found at the LHC@home message board.
[2025-12-16 22:39:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 22:39:02] Checking for apptainer binary...
[2025-12-16 22:39:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 22:39:02] Running /usr/bin/apptainer --version
[2025-12-16 22:39:02] apptainer version 1.3.2-1.el7
[2025-12-16 22:39:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 22:39:03] c-205-26.aglt2.org
[2025-12-16 22:39:03] apptainer works
[2025-12-16 22:39:03] Set ATHENA_PROC_NUMBER=12
[2025-12-16 22:39:03] Set ATHENA_CORE_NUMBER=12
[2025-12-16 22:39:03] Starting ATLAS job with PandaID=6931732602
[2025-12-16 22:39:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:58:32]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:58:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 23:58:32]  replicas=None
[2025-12-16 23:58:32]  scope=mc23_13p6TeV
[2025-12-16 23:58:32]  status=None
[2025-12-16 23:58:32]  status_code=0
[2025-12-16 23:58:32]  storage_token=
[2025-12-16 23:58:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931732602/log.47886933._007595.job.log.tgz.1
[2025-12-16 23:58:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/47/log.47886933._007595.job.log.tgz.1
[2025-12-16 23:58:32]  workdir=None
[2025-12-16 23:58:32] ]
[2025-12-16 23:58:32] 2025-12-17 04:57:35,639 | INFO     | transferring file log.47886933._007595.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931732602/log.47886933._007595.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 23:58:32] 2025-12-17 04:57:35,639 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931732602/log.47886933._007595.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._007595.job
[2025-12-16 23:58:32] 2025-12-17 04:57:35,663 | INFO     | adding to output.list: log.47886933._007595.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/47/log.47886933._007595.job.log.tg
[2025-12-16 23:58:32] 2025-12-17 04:57:35,664 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 23:58:32] 2025-12-17 04:57:35,664 | INFO     | summary of transferred files:
[2025-12-16 23:58:32] 2025-12-17 04:57:35,664 | INFO     |  -- lfn=log.47886933._007595.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 23:58:32] 2025-12-17 04:57:35,665 | INFO     | stage-out finished correctly
[2025-12-16 23:58:32] 2025-12-17 04:57:35,747 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 23:58:32] 2025-12-17 04:57:35,803 | INFO     | time since job start (4697s) is within the limit (174528.0s)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,474 | INFO     | monitor loop #349: job 0:6931732602 is in state 'finished'
[2025-12-16 23:58:32] 2025-12-17 04:57:37,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,804 | INFO     | time since job start (4699s) is within the limit (174528.0s)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,857 | INFO     | job 6931732602 has state=finished
[2025-12-16 23:58:32] 2025-12-17 04:57:37,858 | INFO     | preparing for final server update for job 6931732602 in state='finished'
[2025-12-16 23:58:32] 2025-12-17 04:57:37,926 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,926 | INFO     | this job has now completed (state=finished)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,926 | INFO     | log transfer has been attempted: DONE
[2025-12-16 23:58:32] 2025-12-17 04:57:37,926 | INFO     | job 6931732602 has finished - writing final server update
[2025-12-16 23:58:32] 2025-12-17 04:57:37,927 | INFO     | total number of processed events: 400 (read)
[2025-12-16 23:58:32] 2025-12-17 04:57:37,927 | INFO     | executing command: lscpu
[2025-12-16 23:58:32] 2025-12-17 04:57:37,955 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 23:58:32] 2025-12-17 04:57:39,809 | INFO     | time since job start (4701s) is within the limit (174528.0s)
[2025-12-16 23:58:32] 2025-12-17 04:57:39,977 | INFO     | monitor loop #350: job 0:6931732602 is in state 'finished'
[2025-12-16 23:58:32] 2025-12-17 04:57:39,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:58:32] 2025-12-17 04:57:41,815 | INFO     | time since job start (4703s) is within the limit (174528.0s)
[2025-12-16 23:58:32] 2025-12-17 04:57:42,481 | INFO     | monitor loop #351: job 0:6931732602 is in state 'finished'
[2025-12-16 23:58:32] 2025-12-17 04:57:42,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:58:32] 2025-12-17 04:57:42,932 | INFO     | PID=15005 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,724 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 23:58:32] 2025-12-17 04:57:43,727 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-12-16 23:58:32] 2025-12-17 04:57:43,729 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931732602/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,730 | INFO     | extracted standard info from prmon json
[2025-12-16 23:58:32] 2025-12-17 04:57:43,730 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 23:58:32] 2025-12-17 04:57:43,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 23:58:32] 2025-12-17 04:57:43,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 23:58:32] 2025-12-17 04:57:43,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 23:58:32] 2025-12-17 04:57:43,732 | INFO     | fitting pss+swap vs Time
[2025-12-16 23:58:32] 2025-12-17 04:57:43,733 | INFO     | sum of square deviations: 106336877.5
[2025-12-16 23:58:32] 2025-12-17 04:57:43,733 | INFO     | sum of deviations: -7455114725.5
[2025-12-16 23:58:32] 2025-12-17 04:57:43,733 | INFO     | mean x: 1765945197.5
[2025-12-16 23:58:32] 2025-12-17 04:57:43,733 | INFO     | mean y: 2766016.6142857145
[2025-12-16 23:58:32] 2025-12-17 04:57:43,734 | INFO     | intersect: 123810464303.67615
[2025-12-16 23:58:32] 2025-12-17 04:57:43,734 | INFO     | chi2: 0.11840988992097418
[2025-12-16 23:58:32] 2025-12-17 04:57:43,734 | INFO     | current memory leak: -70.11 B/s (using 70 data points, chi2=0.12)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,734 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | ..............................
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . Timing measurements:
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . get job = 0 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . initial setup = 2 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . payload setup = 7 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . stage-in = 0 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . payload execution = 4669 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . stage-out = 0 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,735 | INFO     | . log creation = 0 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,736 | INFO     | ..............................
[2025-12-16 23:58:32] 2025-12-17 04:57:43,886 | INFO     | 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,886 | INFO     | job summary report
[2025-12-16 23:58:32] 2025-12-17 04:57:43,886 | INFO     | --------------------------------------------------
[2025-12-16 23:58:32] 2025-12-17 04:57:43,886 | INFO     | PanDA job id: 6931732602
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | task id: 47886933
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | errors: (none)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | pilot state: finished 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | transexitcode: 0
[2025-12-16 23:58:32] 2025-12-17 04:57:43,887 | INFO     | exeerrorcode: 0
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | exeerrordiag: 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | exitcode: 0
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | exitmsg: OK
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | cpuconsumptiontime: 49894 s
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | nevents: 400
[2025-12-16 23:58:32] 2025-12-17 04:57:43,888 | INFO     | neventsw: 0
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | pid: 21365
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | pgrp: 21365
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | corecount: 12
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | event service: False
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | sizes: {0: 2283794, 1: 2283993, 5: 2284255, 11: 2284311, 4680: 2310434, 4681: 2319644, 4689: 2319782}
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | --------------------------------------------------
[2025-12-16 23:58:32] 2025-12-17 04:57:43,889 | INFO     | 
[2025-12-16 23:58:32] 2025-12-17 04:57:43,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 23:58:32] 2025-12-17 04:57:43,915 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:58:32] 2025-12-17 04:57:43,919 | INFO     | job 6931732602 has completed (purged errors)
[2025-12-16 23:58:32] 2025-12-17 04:57:43,919 | INFO     | overall cleanup function is called
[2025-12-16 23:58:32] 2025-12-17 04:57:44,927 | INFO     | --- collectZombieJob: --- 10, [21365]
[2025-12-16 23:58:32] 2025-12-17 04:57:44,927 | INFO     | zombie collector waiting for pid 21365
[2025-12-16 23:58:32] 2025-12-17 04:57:44,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:58:32] 2025-12-17 04:57:44,928 | INFO     | collected zombie processes
[2025-12-16 23:58:32] 2025-12-17 04:57:44,928 | INFO     | will attempt to kill all subprocesses of pid=21365
[2025-12-16 23:58:32] 2025-12-17 04:57:45,020 | INFO     | process IDs to be killed: [21365] (in reverse order)
[2025-12-16 23:58:32] 2025-12-17 04:57:45,072 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:58:32] 2025-12-17 04:57:45,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:58:32] 2025-12-17 04:57:45,075 | INFO     | did not find any defunct processes belonging to 21365
[2025-12-16 23:58:32] 2025-12-17 04:57:45,077 | INFO     | did not find any defunct processes belonging to 21365
[2025-12-16 23:58:32] 2025-12-17 04:57:45,077 | INFO     | ready for new job
[2025-12-16 23:58:32] 2025-12-17 04:57:45,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:58:32] 2025-12-17 04:57:45,078 | INFO     | ***************************************
[2025-12-16 23:58:32] 2025-12-17 04:57:45,078 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:58:32] 2025-12-17 04:57:45,079 | INFO     | ***************************************
[2025-12-16 23:58:32] 2025-12-17 04:57:45,079 | INFO     | 
[2025-12-16 23:58:32] 2025-12-17 04:57:45,079 | INFO     | architecture information:
[2025-12-16 23:58:32] 2025-12-17 04:57:45,080 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:58:32] 2025-12-17 04:57:45,093 | INFO     | cat /etc/os-release:
[2025-12-16 23:58:32] NAME="CentOS Linux"
[2025-12-16 23:58:32] VERSION="7 (Core)"
[2025-12-16 23:58:32] ID="centos"
[2025-12-16 23:58:32] ID_LIKE="rhel fedora"
[2025-12-16 23:58:32] VERSION_ID="7"
[2025-12-16 23:58:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:58:32] ANSI_COLOR="0;31"
[2025-12-16 23:58:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:58:32] HOME_URL="https://www.centos.org/"
[2025-12-16 23:58:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:58:32] 
[2025-12-16 23:58:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:58:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:58:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:58:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:58:32] 
[2025-12-16 23:58:32] 2025-12-17 04:57:45,094 | INFO     | ***************************************
[2025-12-16 23:58:32] 2025-12-17 04:57:45,597 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 23:58:32] 2025-12-17 04:57:45,614 | INFO     | sufficient remaining disk space (29462888448 B)
[2025-12-16 23:58:32] 2025-12-17 04:57:45,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:58:32] 2025-12-17 04:57:45,614 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:58:32] 2025-12-17 04:57:45,614 | INFO     | update_server=False
[2025-12-16 23:58:32] 2025-12-17 04:57:45,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:58:32] 2025-12-17 04:57:45,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:58:32] 2025-12-17 04:57:45,734 | INFO     | all data control threads have been joined
[2025-12-16 23:58:32] 2025-12-17 04:57:45,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:58:32] 2025-12-17 04:57:45,990 | INFO     | aborting loop
[2025-12-16 23:58:32] 2025-12-17 04:57:46,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:58:32] 2025-12-17 04:57:46,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:58:32] 2025-12-17 04:57:46,573 | INFO     | all payload control threads have been joined
[2025-12-16 23:58:32] 2025-12-17 04:57:46,617 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:46,620 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:46,740 | INFO     | [data] control thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:46,817 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:46,938 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:46,995 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,088 | INFO     | all job control threads have been joined
[2025-12-16 23:58:32] 2025-12-17 04:57:47,098 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,102 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,259 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,576 | INFO     | [payload] control thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,678 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:47,737 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:48,072 | INFO     | [job] validate thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:48,092 | INFO     | [job] control thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:48,271 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:57:50,341 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:58:32] 2025-12-17 04:58:15,129 | INFO     | PID=15005 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 23:58:32] 2025-12-17 04:58:15,129 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:58:32] 2025-12-17 04:58:15,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:58:32] 2025-12-17 04:58:15,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:58:32] 2025-12-17 04:58:25,715 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:58:32] 2025-12-17 04:58:27,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140669665568576)>', '<ExcThread(monitor, started 140669087635200)>']
[2025-12-16 23:58:32] 2025-12-17 04:58:27,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:58:32] 2025-12-17 04:58:27,186 | INFO     | [monitor] control thread has ended
[2025-12-16 23:58:32] 2025-12-17 04:58:32,080 | INFO     | all workflow threads have been joined
[2025-12-16 23:58:32] 2025-12-17 04:58:32,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:58:32] 2025-12-17 04:58:32,081 | INFO     | traces error code: 0
[2025-12-16 23:58:32] 2025-12-17 04:58:32,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:58:32] 2025-12-17 04:58:32,171 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:58:32] 2025-12-17 04:58:32,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:58:32] 2025-12-17 04:58:32,179 [wrapper] pilotpid: 15005
[2025-12-16 23:58:32] 2025-12-17 04:58:32,183 [wrapper] Pilot exit status: 0
[2025-12-16 23:58:32] 2025-12-17 04:58:32,198 [wrapper] pandaids: 6931732602
[2025-12-16 23:58:32] 2025-12-17 04:58:32,243 [wrapper] cleanup supervisor_pilot 17253 15006
[2025-12-16 23:58:32] 2025-12-17 04:58:32,247 [wrapper] Test setup, not cleaning
[2025-12-16 23:58:32] 2025-12-17 04:58:32,251 [wrapper] apfmon messages muted
[2025-12-16 23:58:32] 2025-12-17 04:58:32,255 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:58:32] 2025-12-17 04:58:32,258 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:58:32]  *** Error codes and diagnostics ***
[2025-12-16 23:58:32]     "exeErrorCode": 0,
[2025-12-16 23:58:32]     "exeErrorDiag": "",
[2025-12-16 23:58:32]     "pilotErrorCode": 0,
[2025-12-16 23:58:32]     "pilotErrorDiag": "",
[2025-12-16 23:58:32]  *** Listing of results directory ***
[2025-12-16 23:58:32] total 331812
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 17:36 pilot3.tar.gz
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 17:36 queuedata.json
[2025-12-16 23:58:32] -rwx------ 1 boincer umatlas     36322 Dec 16 17:37 runpilot2-wrapper.sh
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas       100 Dec 16 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:58:32] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 22:39 run_atlas
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas       105 Dec 16 22:39 job.xml
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas 189634545 Dec 16 22:39 EVNT.47886929._000291.pool.root.1
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 22:39 start_atlas.sh
[2025-12-16 23:58:32] drwxrwx--x 2 boincer umatlas      4096 Dec 16 22:39 shared
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas    592400 Dec 16 22:39 input.tar.gz
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas         0 Dec 16 22:39 boinc_lockfile
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas      2513 Dec 16 22:39 pandaJob.out
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas        57 Dec 16 22:39 setup.sh.local
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas    987409 Dec 16 22:39 agis_schedconf.cvmfs.json
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas   1516240 Dec 16 22:39 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:58:32] drwx------ 5 boincer umatlas      4096 Dec 16 22:39 pilot3
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas 144109878 Dec 16 23:57 HITS.47886933._007595.pool.root.1
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas       529 Dec 16 23:57 boinc_task_state.xml
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas        95 Dec 16 23:57 pilot_heartbeat.json
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas      1058 Dec 16 23:57 memory_monitor_summary.json
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas    376244 Dec 16 23:57 log.47886933._007595.job.log.tgz.1
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 23:57 init_data.xml
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas      7846 Dec 16 23:57 heartbeat.json
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 23:58 boinc_mmap_file
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas        27 Dec 16 23:58 wrapper_checkpoint.txt
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas      4746 Dec 16 23:58 pilotlog.txt
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas    680789 Dec 16 23:58 log.47886933._007595.job.log.1
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas       357 Dec 16 23:58 output.list
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas       620 Dec 16 23:58 runtime_log
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas   1075200 Dec 16 23:58 result.tar.gz
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 23:58 runtime_log.err
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas       659 Dec 16 23:58 jkrMDmQqsp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuKWKDmhariJn.diag
[2025-12-16 23:58:32] -rw-r--r-- 1 boincer umatlas     22032 Dec 16 23:58 stderr.txt
[2025-12-16 23:58:32] HITS file was successfully produced:
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas 144109878 Dec 16 23:57 shared/HITS.pool.root.1
[2025-12-16 23:58:32]  *** Contents of shared directory: ***
[2025-12-16 23:58:32] total 327580
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas 189634545 Dec 16 22:39 ATLAS.root_0
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 22:39 start_atlas.sh
[2025-12-16 23:58:32] -rw-r--r-- 2 boincer umatlas    592400 Dec 16 22:39 input.tar.gz
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas 144109878 Dec 16 23:57 HITS.pool.root.1
[2025-12-16 23:58:32] -rw------- 1 boincer umatlas   1075200 Dec 16 23:58 result.tar.gz
23:58:33 (11287): run_atlas exited; CPU time 49884.263261
23:58:33 (11287): called boinc_finish(0)

</stderr_txt>
]]>

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