Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:27:32 (4043175): wrapper (7.7.26015): starting
19:27:32 (4043175): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 19:27:32] Arguments: --nthreads 12
[2025-12-16 19:27:32] Threads: 12
[2025-12-16 19:27:32] Checking for CVMFS
[2025-12-16 19:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 19:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 19:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 19:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 19:27:33] 2.11.5.0 2137812 22891 335708 154097 2 367 30603355 45568000 12048 130560 0 128118673 99.790 84672659 24042 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-16 19:27:33] CVMFS is ok
[2025-12-16 19:27:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 19:27:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 19:27:33] Further information can be found at the LHC@home message board.
[2025-12-16 19:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 19:27:33] Checking for apptainer binary...
[2025-12-16 19:27:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 19:27:33] Running /usr/bin/apptainer --version
[2025-12-16 19:27:33] apptainer version 1.4.1-1.el9
[2025-12-16 19:27:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 19:27:34] wns0059.triumf.lcg
[2025-12-16 19:27:34] apptainer works
[2025-12-16 19:27:34] Set ATHENA_PROC_NUMBER=12
[2025-12-16 19:27:34] Set ATHENA_CORE_NUMBER=12
[2025-12-16 19:27:35] Starting ATLAS job with PandaID=6931731651
[2025-12-16 19:27:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:33:22]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | wrong length of table data, x=[1765942171.0], y=[2496.0] (must be same and length>=4)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | could have reported an average CPU frequency of 2099 MHz (4 samples)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . Timing measurements:
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . get job = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . initial setup = 4 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload setup = 18 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-in = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload execution = 50 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-out = 1 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . log creation = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-16 19:33:22] 2025-12-17 03:32:30,274 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6931731651/pilotlog.txt
[2025-12-16 19:33:22] 2025-12-17 03:32:30,330 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-16 19:33:22] - Log from pilotlog.txt -
[2025-12-16 19:33:22] 2025-12-17 03:32:30,270 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6931731651/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | INFO     | extracted standard info from prmon json
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | wrong length of table data, x=[1765942171.0], y=[2496.0] (must be same and length>=4)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | could have reported an average CPU frequency of 2099 MHz (4 samples)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . Timing measurements:
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . get job = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . initial setup = 4 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload setup = 18 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-in = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload execution = 50 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-out = 1 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . log creation = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-16 19:33:22] 2025-12-17 03:32:30,274 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6931731651/pilotlog.txt
[2025-12-16 19:33:22] 2025-12-17 03:32:30,331 | WARNING  | 
[2025-12-16 19:33:22] [begin log extracts]
[2025-12-16 19:33:22] - Log from pilotlog.txt -
[2025-12-16 19:33:22] 2025-12-17 03:32:30,270 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6931731651/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | INFO     | extracted standard info from prmon json
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:33:22] 2025-12-17 03:32:30,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:33:22] 2025-12-17 03:32:30,272 | WARNING  | wrong length of table data, x=[1765942171.0], y=[2496.0] (must be same and length>=4)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | could have reported an average CPU frequency of 2099 MHz (4 samples)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . Timing measurements:
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . get job = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . initial setup = 4 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload setup = 18 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-in = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . payload execution = 50 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . stage-out = 1 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | . log creation = 0 s
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | ..............................
[2025-12-16 19:33:22] 2025-12-17 03:32:30,273 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-16 19:33:22] 2025-12-17 03:32:30,274 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6931731651/pilotlog.txt
[2025-12-16 19:33:22] [end log extracts]
[2025-12-16 19:33:22] 2025-12-17 03:32:30,331 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-16 19:33:22] 2025-12-17 03:32:30,332 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-16 19:33:22] 2025-12-17 03:32:31,128 | INFO     | 
[2025-12-16 19:33:22] 2025-12-17 03:32:31,132 | INFO     | job summary report
[2025-12-16 19:33:22] 2025-12-17 03:32:31,132 | INFO     | --------------------------------------------------
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | PanDA job id: 6931731651
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | task id: 47886831
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-16 19:30:00,319 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | pilot state: failed 
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | transexitcode: 65
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | exeerrorcode: 65
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | exitcode: 65
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | cpuconsumptiontime: 21 s
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | nevents: 0
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | neventsw: 0
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | pid: 4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | pgrp: 4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:31,133 | INFO     | corecount: 12
[2025-12-16 19:33:22] 2025-12-17 03:32:31,134 | INFO     | event service: False
[2025-12-16 19:33:22] 2025-12-17 03:32:31,134 | INFO     | sizes: {0: 2283166, 1: 2283848, 2: 2284047, 13: 2284047, 14: 2284365, 24: 2284393, 73: 2307691, 76: 2311983, 78: 2312039, 213: 2312233}
[2025-12-16 19:33:22] 2025-12-17 03:32:31,134 | INFO     | --------------------------------------------------
[2025-12-16 19:33:22] 2025-12-17 03:32:31,134 | INFO     | 
[2025-12-16 19:33:22] 2025-12-17 03:32:31,134 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-16 19:33:22] 2025-12-17 03:32:31,152 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | job 6931731651 has completed (purged errors)
[2025-12-16 19:33:22] 2025-12-17 03:32:31,154 | INFO     | overall cleanup function is called
[2025-12-16 19:33:22] 2025-12-17 03:32:31,371 | INFO     | PID=4046955 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 19:33:22] 2025-12-17 03:32:31,372 | INFO     | .. there are 28 such processes running
[2025-12-16 19:33:22] 2025-12-17 03:32:32,162 | INFO     | --- collectZombieJob: --- 10, [4053663]
[2025-12-16 19:33:22] 2025-12-17 03:32:32,163 | INFO     | zombie collector waiting for pid 4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:32,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:33:22] 2025-12-17 03:32:32,163 | INFO     | collected zombie processes
[2025-12-16 19:33:22] 2025-12-17 03:32:32,163 | INFO     | will attempt to kill all subprocesses of pid=4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:32,649 | INFO     | process IDs to be killed: [4053663] (in reverse order)
[2025-12-16 19:33:22] 2025-12-17 03:32:33,125 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:33:22] 2025-12-17 03:32:33,126 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:33:22] 2025-12-17 03:32:33,155 | INFO     | did not find any defunct processes belonging to 4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:33,193 | INFO     | did not find any defunct processes belonging to 4053663
[2025-12-16 19:33:22] 2025-12-17 03:32:33,193 | INFO     | ready for new job
[2025-12-16 19:33:22] 2025-12-17 03:32:33,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:33:22] 2025-12-17 03:32:33,195 | INFO     | ***************************************
[2025-12-16 19:33:22] 2025-12-17 03:32:33,195 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:33:22] 2025-12-17 03:32:33,195 | INFO     | ***************************************
[2025-12-16 19:33:22] 2025-12-17 03:32:33,195 | INFO     | 
[2025-12-16 19:33:22] 2025-12-17 03:32:33,234 | INFO     | architecture information:
[2025-12-16 19:33:22] 2025-12-17 03:32:33,245 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:33:22] 2025-12-17 03:32:33,293 | INFO     | cat /etc/os-release:
[2025-12-16 19:33:22] NAME="CentOS Linux"
[2025-12-16 19:33:22] VERSION="7 (Core)"
[2025-12-16 19:33:22] ID="centos"
[2025-12-16 19:33:22] ID_LIKE="rhel fedora"
[2025-12-16 19:33:22] VERSION_ID="7"
[2025-12-16 19:33:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:33:22] ANSI_COLOR="0;31"
[2025-12-16 19:33:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:33:22] HOME_URL="https://www.centos.org/"
[2025-12-16 19:33:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:33:22] 
[2025-12-16 19:33:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:33:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:33:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:33:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:33:22] 
[2025-12-16 19:33:22] 2025-12-17 03:32:33,294 | INFO     | ***************************************
[2025-12-16 19:33:22] 2025-12-17 03:32:33,798 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-16 19:33:22] 2025-12-17 03:32:33,876 | INFO     | sufficient remaining disk space (2028078104576 B)
[2025-12-16 19:33:22] 2025-12-17 03:32:33,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:33:22] 2025-12-17 03:32:33,876 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:33:22] 2025-12-17 03:32:33,876 | INFO     | update_server=False
[2025-12-16 19:33:22] 2025-12-17 03:32:33,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:33:22] 2025-12-17 03:32:34,148 | INFO     | all data control threads have been joined
[2025-12-16 19:33:22] 2025-12-17 03:32:34,666 | INFO     | all job control threads have been joined
[2025-12-16 19:33:22] 2025-12-17 03:32:34,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:33:22] 2025-12-17 03:32:34,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:33:22] 2025-12-17 03:32:34,685 | INFO     | aborting loop
[2025-12-16 19:33:22] 2025-12-17 03:32:34,882 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,154 | INFO     | [data] control thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,237 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,320 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,321 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,355 | INFO     | all payload control threads have been joined
[2025-12-16 19:33:22] 2025-12-17 03:32:35,485 | INFO     | [job] validate thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,539 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,672 | INFO     | [job] control thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,690 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:33:22] 2025-12-17 03:32:35,703 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:35,846 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:36,194 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:36,361 | INFO     | [payload] control thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:36,686 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:36,702 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:32:36,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:33:22] 2025-12-17 03:32:40,927 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:33:22] 2025-12-17 03:33:04,315 | INFO     | PID=4046955 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 19:33:22] 2025-12-17 03:33:04,315 | INFO     | .. there are 28 such processes running
[2025-12-16 19:33:22] 2025-12-17 03:33:04,315 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:33:22] 2025-12-17 03:33:04,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:33:22] 2025-12-17 03:33:04,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:33:22] 2025-12-17 03:33:15,611 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:33:22] 2025-12-17 03:33:16,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534284470080)>', '<ExcThread(monitor, started 140533578053376)>']
[2025-12-16 19:33:22] 2025-12-17 03:33:17,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:33:22] 2025-12-17 03:33:17,395 | INFO     | [monitor] control thread has ended
[2025-12-16 19:33:22] 2025-12-17 03:33:21,953 | INFO     | all workflow threads have been joined
[2025-12-16 19:33:22] 2025-12-17 03:33:21,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:33:22] 2025-12-17 03:33:21,954 | INFO     | traces error code: 0
[2025-12-16 19:33:22] 2025-12-17 03:33:21,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:33:22] 2025-12-17 03:33:22,490 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:33:22] 2025-12-17 03:33:22,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:33:22] 2025-12-17 03:33:22,523 [wrapper] pilotpid: 4046955
[2025-12-16 19:33:22] 2025-12-17 03:33:22,546 [wrapper] Pilot exit status: 0
[2025-12-16 19:33:22] 2025-12-17 03:33:22,586 [wrapper] pandaids: 6931731651
[2025-12-16 19:33:22] 2025-12-17 03:33:22,641 [wrapper] cleanup supervisor_pilot 4046961 4046956
[2025-12-16 19:33:22] 2025-12-17 03:33:22,644 [wrapper] Test setup, not cleaning
[2025-12-16 19:33:22] 2025-12-17 03:33:22,646 [wrapper] apfmon messages muted
[2025-12-16 19:33:22] 2025-12-17 03:33:22,648 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:33:22] 2025-12-17 03:33:22,650 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:33:22]  *** Error codes and diagnostics ***
[2025-12-16 19:33:22]     "exeErrorCode": 65,
[2025-12-16 19:33:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-16 19:33:22]     "pilotErrorCode": 1305,
[2025-12-16 19:33:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-16 19:33:22]  *** Listing of results directory ***
[2025-12-16 19:33:22] total 190156
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc    579449 Dec 16 14:36 pilot3.tar.gz
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc      5112 Dec 16 14:36 queuedata.json
[2025-12-16 19:33:22] -rwx------. 1 boinc boinc     36322 Dec 16 14:36 runpilot2-wrapper.sh
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc       100 Dec 16 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:33:22] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 19:27 run_atlas
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc       105 Dec 16 19:27 job.xml
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc      6592 Dec 16 19:27 init_data.xml
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc 190577914 Dec 16 19:27 EVNT.47886829._000596.pool.root.1
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc     15847 Dec 16 19:27 start_atlas.sh
[2025-12-16 19:33:22] drwxrwx--x. 2 boinc boinc      4096 Dec 16 19:27 shared
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc    592411 Dec 16 19:27 input.tar.gz
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc         0 Dec 16 19:27 boinc_lockfile
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc      2540 Dec 16 19:27 pandaJob.out
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc    987409 Dec 16 19:28 agis_schedconf.cvmfs.json
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc   1516240 Dec 16 19:28 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:33:22] drwx------. 5 boinc boinc      4096 Dec 16 19:28 pilot3
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc       947 Dec 16 19:30 memory_monitor_summary.json
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc     22121 Dec 16 19:30 log.47886831._015431.job.log.tgz.1
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc        95 Dec 16 19:32 pilot_heartbeat.json
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc      8379 Dec 16 19:32 heartbeat.json
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc       524 Dec 16 19:33 boinc_task_state.xml
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc      8192 Dec 16 19:33 boinc_mmap_file
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc        22 Dec 16 19:33 wrapper_checkpoint.txt
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc      4823 Dec 16 19:33 pilotlog.txt
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc     92501 Dec 16 19:33 log.47886831._015431.job.log.1
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc       188 Dec 16 19:33 output.list
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc       620 Dec 16 19:33 runtime_log
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc    133120 Dec 16 19:33 result.tar.gz
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc      8636 Dec 16 19:33 runtime_log.err
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc       644 Dec 16 19:33 QtyLDmypsp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMmaKDmres9qm.diag
[2025-12-16 19:33:22] -rw-r--r--. 1 boinc boinc     21939 Dec 16 19:33 stderr.txt
[2025-12-16 19:33:22] No HITS result produced
[2025-12-16 19:33:22]  *** Contents of shared directory: ***
[2025-12-16 19:33:22] total 186844
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc 190577914 Dec 16 19:27 ATLAS.root_0
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc     15847 Dec 16 19:27 start_atlas.sh
[2025-12-16 19:33:22] -rw-r--r--. 2 boinc boinc    592411 Dec 16 19:27 input.tar.gz
[2025-12-16 19:33:22] -rw-------. 1 boinc boinc    133120 Dec 16 19:33 result.tar.gz
19:33:23 (4043175): run_atlas exited; CPU time 31.776459
19:33:23 (4043175): called boinc_finish(0)

</stderr_txt>
]]>

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