Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:56:02 (7030): wrapper (7.7.26015): starting
21:56:02 (7030): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 21:56:02] Arguments: --nthreads 12
[2025-12-16 21:56:02] Threads: 12
[2025-12-16 21:56:02] Checking for CVMFS
[2025-12-16 21:56:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 21:56:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 21:56:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 21:56:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 21:56:02] 2.11.2.0 2998 133062 95848 154095 3 57 13531148 20275201 1 130560 0 57163878 99.957 5866008 35537 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 21:56:02] CVMFS is ok
[2025-12-16 21:56:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 21:56:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 21:56:02] Further information can be found at the LHC@home message board.
[2025-12-16 21:56:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 21:56:02] Checking for apptainer binary...
[2025-12-16 21:56:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 21:56:02] Running /usr/bin/apptainer --version
[2025-12-16 21:56:02] apptainer version 1.3.2-1.el7
[2025-12-16 21:56:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 21:56:04] c-205-12.aglt2.org
[2025-12-16 21:56:04] apptainer works
[2025-12-16 21:56:04] Set ATHENA_PROC_NUMBER=12
[2025-12-16 21:56:04] Set ATHENA_CORE_NUMBER=12
[2025-12-16 21:56:04] Starting ATLAS job with PandaID=6931011778
[2025-12-16 21:56:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:12:31]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:12:31]  protocol_id=None
[2025-12-16 23:12:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 23:12:31]  replicas=None
[2025-12-16 23:12:31]  scope=mc23_13p6TeV
[2025-12-16 23:12:31]  status=None
[2025-12-16 23:12:31]  status_code=0
[2025-12-16 23:12:31]  storage_token=
[2025-12-16 23:12:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931011778/log.47886831._013018.job.log.tgz.1
[2025-12-16 23:12:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/34/log.47886831._013018.job.log.tgz.1
[2025-12-16 23:12:31]  workdir=None
[2025-12-16 23:12:31] ]
[2025-12-16 23:12:31] 2025-12-17 04:11:40,305 | INFO     | transferring file log.47886831._013018.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931011778/log.47886831._013018.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 23:12:31] 2025-12-17 04:11:40,306 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931011778/log.47886831._013018.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._013018.job
[2025-12-16 23:12:31] 2025-12-17 04:11:40,327 | INFO     | adding to output.list: log.47886831._013018.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/34/log.47886831._013018.job.log.tg
[2025-12-16 23:12:31] 2025-12-17 04:11:40,328 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 23:12:31] 2025-12-17 04:11:40,328 | INFO     | summary of transferred files:
[2025-12-16 23:12:31] 2025-12-17 04:11:40,329 | INFO     |  -- lfn=log.47886831._013018.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 23:12:31] 2025-12-17 04:11:40,329 | INFO     | stage-out finished correctly
[2025-12-16 23:12:31] 2025-12-17 04:11:40,412 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 23:12:31] 2025-12-17 04:11:40,535 | INFO     | time since job start (4521s) is within the limit (174528.0s)
[2025-12-16 23:12:31] 2025-12-17 04:11:41,645 | INFO     | job 6931011778 has state=finished
[2025-12-16 23:12:31] 2025-12-17 04:11:41,645 | INFO     | preparing for final server update for job 6931011778 in state='finished'
[2025-12-16 23:12:31] 2025-12-17 04:11:41,705 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-16 23:12:31] 2025-12-17 04:11:41,705 | INFO     | this job has now completed (state=finished)
[2025-12-16 23:12:31] 2025-12-17 04:11:41,705 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 23:12:31] 2025-12-17 04:11:41,705 | INFO     | log transfer has been attempted: DONE
[2025-12-16 23:12:31] 2025-12-17 04:11:41,706 | INFO     | job 6931011778 has finished - writing final server update
[2025-12-16 23:12:31] 2025-12-17 04:11:41,706 | INFO     | total number of processed events: 400 (read)
[2025-12-16 23:12:31] 2025-12-17 04:11:41,707 | INFO     | executing command: lscpu
[2025-12-16 23:12:31] 2025-12-17 04:11:41,733 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 23:12:31] 2025-12-17 04:11:42,541 | INFO     | time since job start (4523s) is within the limit (174528.0s)
[2025-12-16 23:12:31] 2025-12-17 04:11:44,547 | INFO     | time since job start (4525s) is within the limit (174528.0s)
[2025-12-16 23:12:31] 2025-12-17 04:11:45,409 | WARNING  | process 17088 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 23:12:31] 2025-12-17 04:11:45,409 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931011778/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:12:31] 2025-12-17 04:11:45,495 | INFO     | number of running child processes to parent process 17088: 1
[2025-12-16 23:12:31] 2025-12-17 04:11:45,495 | INFO     | maximum number of monitored processes: 6
[2025-12-16 23:12:31] 2025-12-17 04:11:45,664 | INFO     | PID=10706 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 23:12:31] 2025-12-17 04:11:46,664 | INFO     | time since job start (4527s) is within the limit (174528.0s)
[2025-12-16 23:12:31] 2025-12-17 04:11:47,546 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 23:12:31] 2025-12-17 04:11:47,550 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-16 23:12:31] 2025-12-17 04:11:47,552 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931011778/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:12:31] 2025-12-17 04:11:47,553 | INFO     | extracted standard info from prmon json
[2025-12-16 23:12:31] 2025-12-17 04:11:47,553 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 23:12:31] 2025-12-17 04:11:47,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 23:12:31] 2025-12-17 04:11:47,553 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 23:12:31] 2025-12-17 04:11:47,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 23:12:31] 2025-12-17 04:11:47,556 | INFO     | fitting pss+swap vs Time
[2025-12-16 23:12:31] 2025-12-17 04:11:47,556 | INFO     | sum of square deviations: 93240818.0
[2025-12-16 23:12:31] 2025-12-17 04:11:47,557 | INFO     | sum of deviations: -978019588.0000001
[2025-12-16 23:12:31] 2025-12-17 04:11:47,557 | INFO     | mean x: 1765942526.0
[2025-12-16 23:12:31] 2025-12-17 04:11:47,557 | INFO     | mean y: 2685121.268656716
[2025-12-16 23:12:31] 2025-12-17 04:11:47,557 | INFO     | intersect: 18525971582.67872
[2025-12-16 23:12:31] 2025-12-17 04:11:47,558 | INFO     | chi2: 0.040578735717693465
[2025-12-16 23:12:31] 2025-12-17 04:11:47,558 | INFO     | current memory leak: -10.49 B/s (using 67 data points, chi2=0.04)
[2025-12-16 23:12:31] 2025-12-17 04:11:47,558 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | ..............................
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | . Timing measurements:
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | . get job = 0 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | . initial setup = 2 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | . payload setup = 7 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,559 | INFO     | . stage-in = 0 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,560 | INFO     | . payload execution = 4492 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,560 | INFO     | . stage-out = 0 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,560 | INFO     | . log creation = 0 s
[2025-12-16 23:12:31] 2025-12-17 04:11:47,560 | INFO     | ..............................
[2025-12-16 23:12:31] 2025-12-17 04:11:48,109 | INFO     | 
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | job summary report
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | --------------------------------------------------
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | PanDA job id: 6931011778
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | task id: 47886831
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | errors: (none)
[2025-12-16 23:12:31] 2025-12-17 04:11:48,110 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | pilot state: finished 
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | transexitcode: 0
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | exeerrorcode: 0
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | exeerrordiag: 
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | exitcode: 0
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | exitmsg: OK
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | cpuconsumptiontime: 48396 s
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | nevents: 400
[2025-12-16 23:12:31] 2025-12-17 04:11:48,111 | INFO     | neventsw: 0
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | pid: 17088
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | pgrp: 17088
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | corecount: 12
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | event service: False
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | sizes: {0: 2283766, 1: 2284021, 6: 2284283, 12: 2284311, 4504: 2310408, 4506: 2319590, 4513: 2319728}
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | --------------------------------------------------
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | 
[2025-12-16 23:12:31] 2025-12-17 04:11:48,112 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 23:12:31] 2025-12-17 04:11:48,138 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,140 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,140 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,140 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,140 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,140 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:12:31] 2025-12-17 04:11:48,142 | INFO     | job 6931011778 has completed (purged errors)
[2025-12-16 23:12:31] 2025-12-17 04:11:48,142 | INFO     | overall cleanup function is called
[2025-12-16 23:12:31] 2025-12-17 04:11:49,150 | INFO     | --- collectZombieJob: --- 10, [17088]
[2025-12-16 23:12:31] 2025-12-17 04:11:49,150 | INFO     | zombie collector waiting for pid 17088
[2025-12-16 23:12:31] 2025-12-17 04:11:49,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:12:31] 2025-12-17 04:11:49,150 | INFO     | collected zombie processes
[2025-12-16 23:12:31] 2025-12-17 04:11:49,150 | INFO     | will attempt to kill all subprocesses of pid=17088
[2025-12-16 23:12:31] 2025-12-17 04:11:49,243 | INFO     | process IDs to be killed: [17088] (in reverse order)
[2025-12-16 23:12:31] 2025-12-17 04:11:49,290 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:12:31] 2025-12-17 04:11:49,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:12:31] 2025-12-17 04:11:49,293 | INFO     | did not find any defunct processes belonging to 17088
[2025-12-16 23:12:31] 2025-12-17 04:11:49,296 | INFO     | did not find any defunct processes belonging to 17088
[2025-12-16 23:12:31] 2025-12-17 04:11:49,296 | INFO     | ready for new job
[2025-12-16 23:12:31] 2025-12-17 04:11:49,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:12:31] 2025-12-17 04:11:49,297 | INFO     | ***************************************
[2025-12-16 23:12:31] 2025-12-17 04:11:49,297 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:12:31] 2025-12-17 04:11:49,298 | INFO     | ***************************************
[2025-12-16 23:12:31] 2025-12-17 04:11:49,298 | INFO     | 
[2025-12-16 23:12:31] 2025-12-17 04:11:49,298 | INFO     | architecture information:
[2025-12-16 23:12:31] 2025-12-17 04:11:49,299 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:12:31] 2025-12-17 04:11:49,314 | INFO     | cat /etc/os-release:
[2025-12-16 23:12:31] NAME="CentOS Linux"
[2025-12-16 23:12:31] VERSION="7 (Core)"
[2025-12-16 23:12:31] ID="centos"
[2025-12-16 23:12:31] ID_LIKE="rhel fedora"
[2025-12-16 23:12:31] VERSION_ID="7"
[2025-12-16 23:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:12:31] ANSI_COLOR="0;31"
[2025-12-16 23:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:12:31] HOME_URL="https://www.centos.org/"
[2025-12-16 23:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:12:31] 
[2025-12-16 23:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:12:31] 
[2025-12-16 23:12:31] 2025-12-17 04:11:49,314 | INFO     | ***************************************
[2025-12-16 23:12:31] 2025-12-17 04:11:49,817 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 23:12:31] 2025-12-17 04:11:49,834 | INFO     | sufficient remaining disk space (29451354112 B)
[2025-12-16 23:12:31] 2025-12-17 04:11:49,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:12:31] 2025-12-17 04:11:49,842 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:12:31] 2025-12-17 04:11:49,842 | INFO     | update_server=False
[2025-12-16 23:12:31] 2025-12-17 04:11:49,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:12:31] 2025-12-17 04:11:49,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:12:31] 2025-12-17 04:11:49,842 | INFO     | aborting loop
[2025-12-16 23:12:31] 2025-12-17 04:11:49,906 | INFO     | all job control threads have been joined
[2025-12-16 23:12:31] 2025-12-17 04:11:50,197 | INFO     | all data control threads have been joined
[2025-12-16 23:12:31] 2025-12-17 04:11:50,433 | INFO     | all payload control threads have been joined
[2025-12-16 23:12:31] 2025-12-17 04:11:50,846 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:50,847 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:50,912 | INFO     | [job] control thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:50,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:12:31] 2025-12-17 04:11:51,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:12:31] 2025-12-17 04:11:51,202 | INFO     | [data] control thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:51,339 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:51,410 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:51,438 | INFO     | [payload] control thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:51,606 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:51,659 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:52,290 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:52,298 | INFO     | [job] validate thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:52,388 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:52,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:12:31] 2025-12-17 04:11:52,929 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:53,656 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:11:55,006 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:12:00,510 | INFO     | job.realtimelogging is not enabled
[2025-12-16 23:12:31] 2025-12-17 04:12:01,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:12:31] 2025-12-17 04:12:19,869 | INFO     | PID=10706 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 23:12:31] 2025-12-17 04:12:19,869 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:12:31] 2025-12-17 04:12:19,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:12:31] 2025-12-17 04:12:19,870 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:12:31] 2025-12-17 04:12:25,746 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:12:31] 2025-12-17 04:12:26,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504284817216)>', '<ExcThread(monitor, started 140502808655616)>']
[2025-12-16 23:12:31] 2025-12-17 04:12:26,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:12:31] 2025-12-17 04:12:26,906 | INFO     | [monitor] control thread has ended
[2025-12-16 23:12:31] 2025-12-17 04:12:31,381 | INFO     | all workflow threads have been joined
[2025-12-16 23:12:31] 2025-12-17 04:12:31,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:12:31] 2025-12-17 04:12:31,388 | INFO     | traces error code: 0
[2025-12-16 23:12:31] 2025-12-17 04:12:31,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:12:31] 2025-12-17 04:12:31,481 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:12:31] 2025-12-17 04:12:31,485 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:12:31] 2025-12-17 04:12:31,489 [wrapper] pilotpid: 10706
[2025-12-16 23:12:31] 2025-12-17 04:12:31,493 [wrapper] Pilot exit status: 0
[2025-12-16 23:12:31] 2025-12-17 04:12:31,508 [wrapper] pandaids: 6931011778
[2025-12-16 23:12:31] 2025-12-17 04:12:31,555 [wrapper] cleanup supervisor_pilot 13381 10707
[2025-12-16 23:12:31] 2025-12-17 04:12:31,559 [wrapper] Test setup, not cleaning
[2025-12-16 23:12:31] 2025-12-17 04:12:31,563 [wrapper] apfmon messages muted
[2025-12-16 23:12:31] 2025-12-17 04:12:31,567 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:12:31] 2025-12-17 04:12:31,571 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:12:31]  *** Error codes and diagnostics ***
[2025-12-16 23:12:31]     "exeErrorCode": 0,
[2025-12-16 23:12:31]     "exeErrorDiag": "",
[2025-12-16 23:12:31]     "pilotErrorCode": 0,
[2025-12-16 23:12:31]     "pilotErrorDiag": "",
[2025-12-16 23:12:31]  *** Listing of results directory ***
[2025-12-16 23:12:31] total 339456
[2025-12-16 23:12:31] -rwx------ 1 boincer umatlas     36322 Dec 16 04:01 runpilot2-wrapper.sh
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 04:01 queuedata.json
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas       100 Dec 16 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:12:31] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 21:56 run_atlas
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas       105 Dec 16 21:56 job.xml
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas 193684266 Dec 16 21:56 EVNT.47886829._000533.pool.root.1
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 21:56 start_atlas.sh
[2025-12-16 23:12:31] drwxrwx--x 2 boincer umatlas      4096 Dec 16 21:56 shared
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas    592406 Dec 16 21:56 input.tar.gz
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas         0 Dec 16 21:56 boinc_lockfile
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 21:56 pandaJob.out
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas        57 Dec 16 21:56 setup.sh.local
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas    987409 Dec 16 21:56 agis_schedconf.cvmfs.json
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas   1516240 Dec 16 21:56 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:12:31] drwx------ 5 boincer umatlas      4096 Dec 16 21:56 pilot3
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 23:02 init_data.xml
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas 147911897 Dec 16 23:11 HITS.47886831._013018.pool.root.1
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas      1045 Dec 16 23:11 memory_monitor_summary.json
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas       529 Dec 16 23:11 boinc_task_state.xml
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas    387528 Dec 16 23:11 log.47886831._013018.job.log.tgz.1
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas      7847 Dec 16 23:11 heartbeat.json
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas        27 Dec 16 23:12 wrapper_checkpoint.txt
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 23:12 boinc_mmap_file
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas        95 Dec 16 23:12 pilot_heartbeat.json
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas      4818 Dec 16 23:12 pilotlog.txt
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas    658551 Dec 16 23:12 log.47886831._013018.job.log.1
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas       357 Dec 16 23:12 output.list
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas       620 Dec 16 23:12 runtime_log
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas   1064960 Dec 16 23:12 result.tar.gz
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas       659 Dec 16 23:12 x0PMDml6fp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7hZKDm4gIZzn.diag
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 23:12 runtime_log.err
[2025-12-16 23:12:31] -rw-r--r-- 1 boincer umatlas     21899 Dec 16 23:12 stderr.txt
[2025-12-16 23:12:31] HITS file was successfully produced:
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas 147911897 Dec 16 23:11 shared/HITS.pool.root.1
[2025-12-16 23:12:31]  *** Contents of shared directory: ***
[2025-12-16 23:12:31] total 335236
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas 193684266 Dec 16 21:56 ATLAS.root_0
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 21:56 start_atlas.sh
[2025-12-16 23:12:31] -rw-r--r-- 2 boincer umatlas    592406 Dec 16 21:56 input.tar.gz
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas 147911897 Dec 16 23:11 HITS.pool.root.1
[2025-12-16 23:12:31] -rw------- 1 boincer umatlas   1064960 Dec 16 23:12 result.tar.gz
23:12:33 (7030): run_atlas exited; CPU time 48349.407550
23:12:33 (7030): called boinc_finish(0)

</stderr_txt>
]]>

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