Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:38:41 (800180): wrapper (7.7.26015): starting
10:38:41 (800180): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 10:38:41] Arguments: --nthreads 3
[2025-12-17 10:38:41] Threads: 3
[2025-12-17 10:38:41] Checking for CVMFS
[2025-12-17 10:38:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 10:38:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 10:38:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 10:38:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 10:38:41] 2.9.2.0 3564296 5683 88340 154106 0 57 31133258 36864001 0 130560 0 3780347 99.990 210520 7285 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 10:38:41] CVMFS is ok
[2025-12-17 10:38:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 10:38:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 10:38:41] Further information can be found at the LHC@home message board.
[2025-12-17 10:38:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 10:38:41] Checking for apptainer binary...
[2025-12-17 10:38:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 10:38:41] Running /usr/bin/apptainer --version
[2025-12-17 10:38:41] apptainer version 1.4.1-1.1
[2025-12-17 10:38:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 10:38:41] thA371b
[2025-12-17 10:38:41] apptainer works
[2025-12-17 10:38:41] Set ATHENA_PROC_NUMBER=3
[2025-12-17 10:38:41] Set ATHENA_CORE_NUMBER=3
[2025-12-17 10:38:41] Starting ATLAS job with PandaID=6931012788
[2025-12-17 10:38:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 12:05:14]  *** The last 200 lines of the pilot log: ***
[2025-12-17 12:05:14] 2025-12-17 11:04:42,475 | INFO     | zombie collector waiting for pid 810342
[2025-12-17 12:05:14] 2025-12-17 11:04:42,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 12:05:14] 2025-12-17 11:04:42,475 | INFO     | collected zombie processes
[2025-12-17 12:05:14] 2025-12-17 11:04:42,475 | INFO     | will attempt to kill all subprocesses of pid=810342
[2025-12-17 12:05:14] 2025-12-17 11:04:42,517 | INFO     | process IDs to be killed: [810342] (in reverse order)
[2025-12-17 12:05:14] 2025-12-17 11:04:42,541 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 12:05:14] 2025-12-17 11:04:42,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 12:05:14] 2025-12-17 11:04:42,542 | INFO     | did not find any defunct processes belonging to 810342
[2025-12-17 12:05:14] 2025-12-17 11:04:42,543 | INFO     | did not find any defunct processes belonging to 810342
[2025-12-17 12:05:14] 2025-12-17 11:04:42,543 | INFO     | ready for new job
[2025-12-17 12:05:14] 2025-12-17 11:04:42,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 12:05:14] 2025-12-17 11:04:42,544 | INFO     | ***************************************
[2025-12-17 12:05:14] 2025-12-17 11:04:42,544 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 12:05:14] 2025-12-17 11:04:42,544 | INFO     | ***************************************
[2025-12-17 12:05:14] 2025-12-17 11:04:42,544 | INFO     | 
[2025-12-17 12:05:14] 2025-12-17 11:04:42,545 | INFO     | architecture information:
[2025-12-17 12:05:14] 2025-12-17 11:04:42,545 | INFO     | executing command: cat /etc/os-release
[2025-12-17 12:05:14] 2025-12-17 11:04:42,553 | INFO     | cat /etc/os-release:
[2025-12-17 12:05:14] NAME="CentOS Linux"
[2025-12-17 12:05:14] VERSION="7 (Core)"
[2025-12-17 12:05:14] ID="centos"
[2025-12-17 12:05:14] ID_LIKE="rhel fedora"
[2025-12-17 12:05:14] VERSION_ID="7"
[2025-12-17 12:05:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 12:05:14] ANSI_COLOR="0;31"
[2025-12-17 12:05:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 12:05:14] HOME_URL="https://www.centos.org/"
[2025-12-17 12:05:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 12:05:14] 
[2025-12-17 12:05:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 12:05:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 12:05:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 12:05:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 12:05:14] 
[2025-12-17 12:05:14] 2025-12-17 11:04:42,553 | INFO     | ***************************************
[2025-12-17 12:05:14] 2025-12-17 11:04:43,056 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 12:05:14] 2025-12-17 11:04:43,069 | INFO     | sufficient remaining disk space (228606345216 B)
[2025-12-17 12:05:14] 2025-12-17 11:04:43,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | INFO     | update_server=False
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:05:14] 2025-12-17 11:04:43,070 | INFO     | aborting loop
[2025-12-17 12:05:14] 2025-12-17 11:04:43,567 | INFO     | all payload control threads have been joined
[2025-12-17 12:05:14] 2025-12-17 11:04:43,975 | INFO     | all data control threads have been joined
[2025-12-17 12:05:14] 2025-12-17 11:04:44,075 | INFO     | [job] retrieve thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,076 | INFO     | [job] queue monitor thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,076 | INFO     | [job] job monitor thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 12:05:14] 2025-12-17 11:04:44,491 | INFO     | all job control threads have been joined
[2025-12-17 12:05:14] 2025-12-17 11:04:44,495 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,569 | INFO     | [payload] control thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,589 | INFO     | [data] copytool_in thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,826 | INFO     | [payload] failed_post thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:44,981 | INFO     | [data] control thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,103 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,123 | INFO     | [job] validate thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,156 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,171 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,335 | INFO     | [payload] validate_post thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:45,497 | INFO     | [job] control thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:46,466 | INFO     | [data] copytool_out thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:46,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 12:05:14] 2025-12-17 11:04:50,522 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 12:05:14] 2025-12-17 11:04:52,729 | INFO     | [monitor] cgroup control has ended
[2025-12-17 12:05:14] 2025-12-17 11:04:53,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139977295931200)>', '<ExcThread(monitor, started 139977023264512)>']
[2025-12-17 12:05:14] 2025-12-17 11:04:58,158 | INFO     | all workflow threads have been joined
[2025-12-17 12:05:14] 2025-12-17 11:04:58,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 12:05:14] 2025-12-17 11:04:58,158 | INFO     | traces error code: 0
[2025-12-17 12:05:14] 2025-12-17 11:04:58,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 12:05:14] 2025-12-17 11:05:13,963 | INFO     | PID=803903 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 12:05:14] 2025-12-17 11:05:13,964 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 12:05:14] 2025-12-17 11:05:13,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 12:05:14] 2025-12-17 11:05:13,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 12:05:14] 2025-12-17 11:05:13,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 12:05:14] 2025-12-17 11:05:13,964 | INFO     | [monitor] control thread has ended
[2025-12-17 12:05:14] 2025-12-17 11:05:14,013 [wrapper] ==== pilot stdout END ====
[2025-12-17 12:05:14] 2025-12-17 11:05:14,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 12:05:14] 2025-12-17 11:05:14,018 [wrapper] pilotpid: 803903
[2025-12-17 12:05:14] 2025-12-17 11:05:14,020 [wrapper] Pilot exit status: 0
[2025-12-17 12:05:14] 2025-12-17 11:05:14,027 [wrapper] pandaids: 6931012788
[2025-12-17 12:05:14] 2025-12-17 11:05:14,042 [wrapper] cleanup supervisor_pilot  822081 803904
[2025-12-17 12:05:14] 2025-12-17 11:05:14,045 [wrapper] Test setup, not cleaning
[2025-12-17 12:05:14] 2025-12-17 11:05:14,047 [wrapper] apfmon messages muted
[2025-12-17 12:05:14] 2025-12-17 11:05:14,049 [wrapper] ==== wrapper stdout END ====
[2025-12-17 12:05:14] 2025-12-17 11:05:14,051 [wrapper] ==== wrapper stderr END ====
[2025-12-17 12:05:14]  *** Error codes and diagnostics ***
[2025-12-17 12:05:14]     "exeErrorCode": 0,
[2025-12-17 12:05:14]     "exeErrorDiag": "",
[2025-12-17 12:05:14]     "pilotErrorCode": 0,
[2025-12-17 12:05:14]     "pilotErrorDiag": "",
[2025-12-17 12:05:14]  *** Listing of results directory ***
[2025-12-17 12:05:14] total 339592
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-17 12:05:14] -rwx------ 1 boinc boinc     36322 Dec 16 10:01 runpilot2-wrapper.sh
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc      5112 Dec 16 10:02 queuedata.json
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc       100 Dec 17 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 12:05:14] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 10:38 run_atlas
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc       105 Dec 17 10:38 job.xml
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc 191783482 Dec 17 10:38 EVNT.47886829._000548.pool.root.1
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc    592417 Dec 17 10:38 input.tar.gz
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:38 start_atlas.sh
[2025-12-17 12:05:14] drwxrwx--x 2 boinc boinc      4096 Dec 17 10:38 shared
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:38 boinc_setup_complete
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc      6440 Dec 17 10:38 init_data.xml
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:38 boinc_lockfile
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc      2539 Dec 17 10:38 pandaJob.out
[2025-12-17 12:05:14] -rw------- 1 boinc boinc    987431 Dec 17 10:38 agis_schedconf.cvmfs.json
[2025-12-17 12:05:14] -rw------- 1 boinc boinc   1516240 Dec 17 10:38 agis_ddmendpoints.agis.ALL.json
[2025-12-17 12:05:14] drwx------ 5 boinc boinc      4096 Dec 17 10:38 pilot3
[2025-12-17 12:05:14] -rw------- 1 boinc boinc 150010111 Dec 17 12:04 HITS.47886831._013401.pool.root.1
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc       529 Dec 17 12:04 boinc_task_state.xml
[2025-12-17 12:05:14] -rw------- 1 boinc boinc      1033 Dec 17 12:04 memory_monitor_summary.json
[2025-12-17 12:05:14] -rw------- 1 boinc boinc    268706 Dec 17 12:04 log.47886831._013401.job.log.tgz.1
[2025-12-17 12:05:14] -rw------- 1 boinc boinc      7759 Dec 17 12:04 heartbeat.json
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc        27 Dec 17 12:05 wrapper_checkpoint.txt
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc      8192 Dec 17 12:05 boinc_mmap_file
[2025-12-17 12:05:14] -rw------- 1 boinc boinc       746 Dec 17 12:05 pilotlog.txt
[2025-12-17 12:05:14] -rw------- 1 boinc boinc        95 Dec 17 12:05 pilot_heartbeat.json
[2025-12-17 12:05:14] -rw------- 1 boinc boinc    753772 Dec 17 12:05 log.47886831._013401.job.log.1
[2025-12-17 12:05:14] -rw------- 1 boinc boinc       357 Dec 17 12:05 output.list
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc       620 Dec 17 12:05 runtime_log
[2025-12-17 12:05:14] -rw------- 1 boinc boinc   1044480 Dec 17 12:05 result.tar.gz
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc      8902 Dec 17 12:05 runtime_log.err
[2025-12-17 12:05:14] -rw------- 1 boinc boinc       659 Dec 17 12:05 J7aKDm76fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJLVKDm8kZJon.diag
[2025-12-17 12:05:14] -rw-r--r-- 1 boinc boinc     10507 Dec 17 12:05 stderr.txt
[2025-12-17 12:05:14] HITS file was successfully produced:
[2025-12-17 12:05:14] -rw------- 1 boinc boinc 150010111 Dec 17 12:04 shared/HITS.pool.root.1
[2025-12-17 12:05:14]  *** Contents of shared directory: ***
[2025-12-17 12:05:14] total 335412
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc 191783482 Dec 17 10:38 ATLAS.root_0
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc    592417 Dec 17 10:38 input.tar.gz
[2025-12-17 12:05:14] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:38 start_atlas.sh
[2025-12-17 12:05:14] -rw------- 1 boinc boinc 150010111 Dec 17 12:04 HITS.pool.root.1
[2025-12-17 12:05:14] -rw------- 1 boinc boinc   1044480 Dec 17 12:05 result.tar.gz
12:05:15 (800180): run_atlas exited; CPU time 14751.714051
12:05:15 (800180): called boinc_finish(0)

</stderr_txt>
]]>

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