Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:29:28 (28890): wrapper (7.7.26015): starting
09:29:28 (28890): wrapper: running run_atlas (--nthreads 8)
[2025-12-17 09:29:28] Arguments: --nthreads 8
[2025-12-17 09:29:28] Threads: 8
[2025-12-17 09:29:28] Checking for CVMFS
[2025-12-17 09:29:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 09:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 09:29:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 09:29:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 09:29:33] 2.11.2.0 24088 2057 68776 154105 1 60 24505401 25165824 4702 130560 0 1350686 99.777 1710335 1323 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-17 09:29:33] CVMFS is ok
[2025-12-17 09:29:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 09:29:33] Checking for apptainer binary...
[2025-12-17 09:29:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 09:29:33] Running /usr/bin/apptainer --version
[2025-12-17 09:29:33] apptainer version 1.3.2-1.el7
[2025-12-17 09:29:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 09:30:09] cg-vwn483.simple-grid.lan
[2025-12-17 09:30:09] apptainer works
[2025-12-17 09:30:09] Set ATHENA_PROC_NUMBER=8
[2025-12-17 09:30:09] Set ATHENA_CORE_NUMBER=8
[2025-12-17 09:30:09] Starting ATLAS job with PandaID=6931484318
[2025-12-17 09:30:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:54:23]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:54:23] 2025-12-17 13:53:20,632 | INFO     | time since job start (19180s) is within the limit (174528.0s)
[2025-12-17 14:54:23] 2025-12-17 13:53:21,970 | INFO     | monitor loop #1366: job 0:6931484318 is in state 'finished'
[2025-12-17 14:54:23] 2025-12-17 13:53:21,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:54:23] 2025-12-17 13:53:22,639 | INFO     | time since job start (19182s) is within the limit (174528.0s)
[2025-12-17 14:54:23] 2025-12-17 13:53:24,478 | INFO     | monitor loop #1367: job 0:6931484318 is in state 'finished'
[2025-12-17 14:54:23] 2025-12-17 13:53:24,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:54:23] 2025-12-17 13:53:24,646 | INFO     | time since job start (19184s) is within the limit (174528.0s)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,579 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 14:54:23] 2025-12-17 13:53:25,580 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-17 14:54:23] 2025-12-17 13:53:25,582 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6931484318/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,582 | INFO     | extracted standard info from prmon json
[2025-12-17 14:54:23] 2025-12-17 13:53:25,583 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:54:23] 2025-12-17 13:53:25,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:54:23] 2025-12-17 13:53:25,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:54:23] 2025-12-17 13:53:25,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:54:23] 2025-12-17 13:53:25,589 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:54:23] 2025-12-17 13:53:25,589 | INFO     | sum of square deviations: 8884603792.5
[2025-12-17 14:54:23] 2025-12-17 13:53:25,599 | INFO     | sum of deviations: 42550872385.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,600 | INFO     | mean x: 1765970180.5
[2025-12-17 14:54:23] 2025-12-17 13:53:25,600 | INFO     | mean y: 2482089.385620915
[2025-12-17 14:54:23] 2025-12-17 13:53:25,600 | INFO     | intersect: -8455246982.292723
[2025-12-17 14:54:23] 2025-12-17 13:53:25,600 | INFO     | chi2: 4.759614493370273
[2025-12-17 14:54:23] 2025-12-17 13:53:25,601 | INFO     | sum of square deviations: 8456158550.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,604 | INFO     | sum of deviations: 62167560740.00001
[2025-12-17 14:54:23] 2025-12-17 13:53:25,604 | INFO     | mean x: 1765970028.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,604 | INFO     | mean y: 2488976.0431893687
[2025-12-17 14:54:23] 2025-12-17 13:53:25,604 | INFO     | intersect: -12980480575.859253
[2025-12-17 14:54:23] 2025-12-17 13:53:25,605 | INFO     | chi2: 4.014928477315038
[2025-12-17 14:54:23] 2025-12-17 13:53:25,605 | INFO     | current chi2=4.014928477315038 (change=15.645931347854262 %)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,605 | INFO     | right removable region: 300
[2025-12-17 14:54:23] 2025-12-17 13:53:25,605 | INFO     | sum of square deviations: 8456158550.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,608 | INFO     | sum of deviations: -52775498771.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,608 | INFO     | mean x: 1765970333.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,609 | INFO     | mean y: 2515964.006644518
[2025-12-17 14:54:23] 2025-12-17 13:53:25,609 | INFO     | intersect: 11024064884.569866
[2025-12-17 14:54:23] 2025-12-17 13:53:25,609 | INFO     | chi2: 1.0700582438784105
[2025-12-17 14:54:23] 2025-12-17 13:53:25,609 | INFO     | current chi2=1.0700582438784105 (change=77.51796399962836 %)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,610 | INFO     | sum of square deviations: 8041713570.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,613 | INFO     | sum of deviations: -63283315704.99999
[2025-12-17 14:54:23] 2025-12-17 13:53:25,613 | INFO     | mean x: 1765970485.5
[2025-12-17 14:54:23] 2025-12-17 13:53:25,613 | INFO     | mean y: 2519796.9324324327
[2025-12-17 14:54:23] 2025-12-17 13:53:25,613 | INFO     | intersect: 13899616079.56074
[2025-12-17 14:54:23] 2025-12-17 13:53:25,613 | INFO     | chi2: 0.9742296996872201
[2025-12-17 14:54:23] 2025-12-17 13:53:25,614 | INFO     | current chi2=0.9742296996872201 (change=8.955451232622751 %)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,614 | INFO     | left removable region: 20
[2025-12-17 14:54:23] 2025-12-17 13:53:25,614 | INFO     | sum of square deviations: 6806862510.0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,624 | INFO     | sum of deviations: -23854715418.5
[2025-12-17 14:54:23] 2025-12-17 13:53:25,624 | INFO     | mean x: 1765970607.5
[2025-12-17 14:54:23] 2025-12-17 13:53:25,624 | INFO     | mean y: 2520102.5392857143
[2025-12-17 14:54:23] 2025-12-17 13:53:25,624 | INFO     | intersect: 6191381155.257693
[2025-12-17 14:54:23] 2025-12-17 13:53:25,625 | INFO     | chi2: 0.14391393949644157
[2025-12-17 14:54:23] 2025-12-17 13:53:25,625 | INFO     | current memory leak: -3.50 B/s (using 280 data points, chi2=0.14)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,625 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | ..............................
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . Timing measurements:
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . get job = 0 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . initial setup = 5 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . payload setup = 123 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . stage-in = 0 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . payload execution = 18784 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . stage-out = 3 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,626 | INFO     | . log creation = 1 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,627 | INFO     | ..............................
[2025-12-17 14:54:23] 2025-12-17 13:53:25,783 | INFO     | 
[2025-12-17 14:54:23] 2025-12-17 13:53:25,783 | INFO     | job summary report
[2025-12-17 14:54:23] 2025-12-17 13:53:25,783 | INFO     | --------------------------------------------------
[2025-12-17 14:54:23] 2025-12-17 13:53:25,783 | INFO     | PanDA job id: 6931484318
[2025-12-17 14:54:23] 2025-12-17 13:53:25,783 | INFO     | task id: 47905841
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | errors: (none)
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | pilot state: finished 
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | transexitcode: 0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | exeerrorcode: 0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | exeerrordiag: 
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | exitcode: 0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | exitmsg: OK
[2025-12-17 14:54:23] 2025-12-17 13:53:25,784 | INFO     | cpuconsumptiontime: 72733 s
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | nevents: 400
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | neventsw: 0
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | pid: 6896
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | pgrp: 6896
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | corecount: 8
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | event service: False
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | sizes: {0: 2283705, 1: 2283904, 12: 2283904, 22: 2283932, 33: 2283960, 44: 2284016, 55: 2284172, 65: 2284200, 76: 2284228, 81: 2284546, 87: 2284574, 18912: 2316897
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | --------------------------------------------------
[2025-12-17 14:54:23] 2025-12-17 13:53:25,785 | INFO     | 
[2025-12-17 14:54:23] 2025-12-17 13:53:25,786 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-17 14:54:23] 2025-12-17 13:53:26,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:54:23] 2025-12-17 13:53:26,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,289 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:54:23] 2025-12-17 13:53:26,289 | INFO     | job 6931484318 has completed (purged errors)
[2025-12-17 14:54:23] 2025-12-17 13:53:26,289 | INFO     | overall cleanup function is called
[2025-12-17 14:54:23] 2025-12-17 13:53:27,297 | INFO     | --- collectZombieJob: --- 10, [6896]
[2025-12-17 14:54:23] 2025-12-17 13:53:27,297 | INFO     | zombie collector waiting for pid 6896
[2025-12-17 14:54:23] 2025-12-17 13:53:27,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:54:23] 2025-12-17 13:53:27,297 | INFO     | collected zombie processes
[2025-12-17 14:54:23] 2025-12-17 13:53:27,297 | INFO     | will attempt to kill all subprocesses of pid=6896
[2025-12-17 14:54:23] 2025-12-17 13:53:27,408 | INFO     | process IDs to be killed: [6896] (in reverse order)
[2025-12-17 14:54:23] 2025-12-17 13:53:27,553 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:54:23] 2025-12-17 13:53:27,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:54:23] 2025-12-17 13:53:27,557 | INFO     | did not find any defunct processes belonging to 6896
[2025-12-17 14:54:23] 2025-12-17 13:53:27,560 | INFO     | did not find any defunct processes belonging to 6896
[2025-12-17 14:54:23] 2025-12-17 13:53:27,560 | INFO     | ready for new job
[2025-12-17 14:54:23] 2025-12-17 13:53:27,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:54:23] 2025-12-17 13:53:27,567 | INFO     | ***************************************
[2025-12-17 14:54:23] 2025-12-17 13:53:27,567 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:54:23] 2025-12-17 13:53:27,567 | INFO     | ***************************************
[2025-12-17 14:54:23] 2025-12-17 13:53:27,568 | INFO     | 
[2025-12-17 14:54:23] 2025-12-17 13:53:27,568 | INFO     | pilot is running in a VM
[2025-12-17 14:54:23] 2025-12-17 13:53:27,568 | INFO     | architecture information:
[2025-12-17 14:54:23] 2025-12-17 13:53:27,576 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:54:23] 2025-12-17 13:53:27,809 | INFO     | cat /etc/os-release:
[2025-12-17 14:54:23] NAME="CentOS Linux"
[2025-12-17 14:54:23] VERSION="7 (Core)"
[2025-12-17 14:54:23] ID="centos"
[2025-12-17 14:54:23] ID_LIKE="rhel fedora"
[2025-12-17 14:54:23] VERSION_ID="7"
[2025-12-17 14:54:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:54:23] ANSI_COLOR="0;31"
[2025-12-17 14:54:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:54:23] HOME_URL="https://www.centos.org/"
[2025-12-17 14:54:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:54:23] 
[2025-12-17 14:54:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:54:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:54:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:54:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:54:23] 
[2025-12-17 14:54:23] 2025-12-17 13:53:27,809 | INFO     | ***************************************
[2025-12-17 14:54:23] 2025-12-17 13:53:28,313 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-17 14:54:23] 2025-12-17 13:53:28,555 | INFO     | sufficient remaining disk space (495654535168 B)
[2025-12-17 14:54:23] 2025-12-17 13:53:28,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:54:23] 2025-12-17 13:53:28,556 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:54:23] 2025-12-17 13:53:28,556 | INFO     | update_server=False
[2025-12-17 14:54:23] 2025-12-17 13:53:28,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:54:23] 2025-12-17 13:53:28,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:54:23] 2025-12-17 13:53:28,557 | INFO     | aborting loop
[2025-12-17 14:54:23] 2025-12-17 13:53:28,711 | INFO     | all payload control threads have been joined
[2025-12-17 14:54:23] 2025-12-17 13:53:29,012 | INFO     | all data control threads have been joined
[2025-12-17 14:54:23] 2025-12-17 13:53:29,562 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:29,563 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:29,577 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:29,717 | INFO     | [payload] control thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:29,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:54:23] 2025-12-17 13:53:29,859 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:30,018 | INFO     | [data] control thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:30,108 | INFO     | all job control threads have been joined
[2025-12-17 14:54:23] 2025-12-17 13:53:30,460 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:30,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:54:23] 2025-12-17 13:53:30,474 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:30,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:54:23] 2025-12-17 13:53:30,804 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:30,945 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:31,047 | INFO     | [job] validate thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:31,114 | INFO     | [job] control thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:31,805 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:31,860 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:34,481 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:39,262 | INFO     | job.realtimelogging is not enabled
[2025-12-17 14:54:23] 2025-12-17 13:53:40,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:54:23] 2025-12-17 13:53:57,823 | INFO     | PID=32739 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-17 14:54:23] 2025-12-17 13:53:57,823 | INFO     | .. there are 9 such processes running
[2025-12-17 14:54:23] 2025-12-17 13:53:57,823 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:54:23] 2025-12-17 13:53:57,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:54:23] 2025-12-17 13:53:57,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:54:23] 2025-12-17 13:54:12,928 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:54:23] 2025-12-17 13:54:13,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471308228416)>', '<ExcThread(monitor, started 140470722225920)>']
[2025-12-17 14:54:23] 2025-12-17 13:54:13,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:54:23] 2025-12-17 13:54:13,921 | INFO     | [monitor] control thread has ended
[2025-12-17 14:54:23] 2025-12-17 13:54:18,593 | INFO     | all workflow threads have been joined
[2025-12-17 14:54:23] 2025-12-17 13:54:18,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:54:23] 2025-12-17 13:54:18,593 | INFO     | traces error code: 0
[2025-12-17 14:54:23] 2025-12-17 13:54:18,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:54:23] 2025-12-17 13:54:19,011 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:54:23] 2025-12-17 13:54:19,105 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:54:23] 2025-12-17 13:54:19,154 [wrapper] pilotpid: 32739
[2025-12-17 14:54:23] 2025-12-17 13:54:19,221 [wrapper] Pilot exit status: 0
[2025-12-17 14:54:23] 2025-12-17 13:54:19,640 [wrapper] pandaids: 6931484318
[2025-12-17 14:54:23] 2025-12-17 13:54:20,575 [wrapper] cleanup supervisor_pilot  7408 32740
[2025-12-17 14:54:23] 2025-12-17 13:54:20,635 [wrapper] Test setup, not cleaning
[2025-12-17 14:54:23] 2025-12-17 13:54:20,732 [wrapper] apfmon messages muted
[2025-12-17 14:54:23] 2025-12-17 13:54:20,842 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:54:23] 2025-12-17 13:54:20,904 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:54:23]  *** Error codes and diagnostics ***
[2025-12-17 14:54:23]     "exeErrorCode": 0,
[2025-12-17 14:54:23]     "exeErrorDiag": "",
[2025-12-17 14:54:23]     "pilotErrorCode": 0,
[2025-12-17 14:54:23]     "pilotErrorDiag": "",
[2025-12-17 14:54:23]  *** Listing of results directory ***
[2025-12-17 14:54:23] total 405364
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc    579449 Dec 16 16:02 pilot3.tar.gz
[2025-12-17 14:54:23] -rwx------. 1 boinc boinc     36322 Dec 16 16:05 runpilot2-wrapper.sh
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc      5112 Dec 16 16:08 queuedata.json
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc       100 Dec 17 09:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:54:23] -rwxr-xr-x. 1 boinc boinc      7986 Dec 17 09:29 run_atlas
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc       105 Dec 17 09:29 job.xml
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc      6392 Dec 17 09:29 init_data.xml
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc 199046523 Dec 17 09:29 EVNT.47905839._000018.pool.root.1
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc     15847 Dec 17 09:29 start_atlas.sh
[2025-12-17 14:54:23] drwxrwx--x. 2 boinc boinc        68 Dec 17 09:29 shared
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc    592371 Dec 17 09:29 input.tar.gz
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc         0 Dec 17 09:29 boinc_lockfile
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc      2450 Dec 17 09:30 pandaJob.out
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc    987417 Dec 17 09:33 agis_schedconf.cvmfs.json
[2025-12-17 14:54:23] drwx------. 5 boinc boinc      4096 Dec 17 09:33 pilot3
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc 206012655 Dec 17 14:50 HITS.47905841._000436.pool.root.1
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc       531 Dec 17 14:51 boinc_task_state.xml
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc      1016 Dec 17 14:51 memory_monitor_summary.json
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc   1516240 Dec 17 14:51 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc    514922 Dec 17 14:51 log.47905841._000436.job.log.tgz.1
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc        95 Dec 17 14:53 pilot_heartbeat.json
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc      7770 Dec 17 14:53 heartbeat.json
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc      8192 Dec 17 14:53 boinc_mmap_file
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc        28 Dec 17 14:53 wrapper_checkpoint.txt
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc      4957 Dec 17 14:54 pilotlog.txt
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc   2551911 Dec 17 14:54 log.47905841._000436.job.log.1
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc       357 Dec 17 14:54 output.list
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc       620 Dec 17 14:54 runtime_log
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc   3082240 Dec 17 14:54 result.tar.gz
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc      8833 Dec 17 14:54 runtime_log.err
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc       656 Dec 17 14:54 4ubLDmUnlp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTJaKDm4RE8Xo.diag
[2025-12-17 14:54:23] -rw-r--r--. 1 boinc boinc     20961 Dec 17 14:54 stderr.txt
[2025-12-17 14:54:23] HITS file was successfully produced:
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc 206012655 Dec 17 14:50 shared/HITS.pool.root.1
[2025-12-17 14:54:23]  *** Contents of shared directory: ***
[2025-12-17 14:54:23] total 399180
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc 199046523 Dec 17 09:29 ATLAS.root_0
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc     15847 Dec 17 09:29 start_atlas.sh
[2025-12-17 14:54:23] -rw-r--r--. 2 boinc boinc    592371 Dec 17 09:29 input.tar.gz
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc 206012655 Dec 17 14:50 HITS.pool.root.1
[2025-12-17 14:54:23] -rw-------. 1 boinc boinc   3082240 Dec 17 14:54 result.tar.gz
14:54:25 (28890): run_atlas exited; CPU time 72987.394196
14:54:25 (28890): called boinc_finish(0)

</stderr_txt>
]]>

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